Threonine-89 participates in the active site of bacteriorhodopsin: Evidence for a role in color regulation and schiff base proton transfer

Biochemistry

Volumn 36, Issue 24, 1997, Pages 7490-7497

  Russell, Terence S ^a   Coleman, Matthew ^a   Rath, Parshuram ^a   Nilsson, Anders ^a,b   Rothschild, Kenneth J ^a  

^a Boston University   (United States)

^b LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; ARGININE; ASPARTIC ACID; BACTERIORHODOPSIN; PROTON; SCHIFF BASE; THREONINE;

AMINO ACID SUBSTITUTION; ARTICLE; ENZYME ACTIVE SITE; HALOBACTERIUM; PRIORITY JOURNAL; PROTON TRANSPORT; PURPLE MEMBRANE;

BACTERIORHODOPSINS; BINDING SITES; HALOBACTERIUM; MODELS, MOLECULAR; MOLECULAR STRUCTURE; MUTAGENESIS; POLYMERASE CHAIN REACTION; PROTON PUMPS; SCHIFF BASES; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SPECTRUM ANALYSIS; SPECTRUM ANALYSIS, RAMAN; STRUCTURE-ACTIVITY RELATIONSHIP; THREONINE;

HALOBACTERIUM; HALOBACTERIUM SALINARUM;

EID: 0030913277     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi970287l     Document Type: Article

References (58)

1. Argade, P. V., & Rothschild, K. J. (1982) Methods Enzymol. 88, 643-648.
2. Aton, B., Doukas, A. G., Callender, R. H., Becher, B., & Ebrey, T. G. (1977) Biochemistry 16, 2995-2999.
3. Bayley, H., Huang, K.-S., Radhakrishnan, R., Ross, A. H., Takagaki, Y., & Khorana, H. G. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 2225-2229.
4. Beaucage, S. L., & Radhakrishnan, P. I. (1993) Tetrahedron 49, 1925-1963.
5. Bousché. O., Braiman, M., He, Y. W., Marti, T., Khorana, H. G., & Rothschild, K. J. (1991) J. Biol. Chem. 266, 11063-11067.
6. Braiman, M., & Mathies, R. (1980) Biochemistry 19, 5421-5428.
7. Braiman, M., & Mathies, R. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 403-407.
8. Braiman, M. S., Mogi, T., Marti, T., Stern, L. J., Khorana, H. G., & Rothschild, K. J. (1988) Biochemistry 27, 8516-8520.
9. Braiman, M. S., Bousché, O., & Rothschild, K. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2388-2392.
10. Brown, L. S., Sasaki, J., Kandori, H., Maeda, A., Needleman, R., & Lanyi, J. K. (1995) J. Biol. Chem. 270, 27122-27126.
11. Coleman, M., Nilsson, A., Russell, T. S., Rath, P., Pandey, R., & Rothschild, K. J. (1995) Biochemistry 34, 15599-15606.
12. de Groot, H. J. M., Harbison, G. S., Herzfeld, J., & Griffin, R. G. (1989) Biochemistry 28, 3346-3353.
13. Duñach, M., Berkowitz, S., Marti, T., He, Y. W., Subramaniam, S., Khorana, H. G., & Rothschild, K. J. (1990a) J. Biol. Chem. 265, 16978-16984.
14. Duñach, M., Marti, T., Khorana, H. G., & Rothschild, K. J. (1990b) Proc. Natl. Acad. Sci. U.S.A. 87, 9873-9877.
15. Fahmy, K., Weidlich, O., Engelhard, M., Tittor, J., Oesterhelt, D., & Siebert, F. (1992) Photochem. Photobiol. 56, 1073-1083.
16. Fischer, W., Sonar, S., Marti, T., Khorana, H. G., & Rothschild, K. J. (1994) Biochemistry 33, 12757-12762.
17. Fodor, S. P. A., Ames, J. B., Gebhard, R., Van den Berg, E. M. M., Stoeckenius, W., Lugtenburg, J., & Mathies, R. A. (1988a) Biochemistry 27, 7097-7101.
18. Fodor, S. P. A., Pollard, W. T., Gebhard, R., Van den Berg, E. M. M., Lugtenburg, J., & Mathies, R. A. (1988b) Proc. Natl. Acad. Sci. U.S.A. 85, 2156-2160.
19. Gerwert, K., Hess, B., Soppa, J., & Oesterhelt, D. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 4943-4947.
20. Grigorieff, N., Ceska, T. A., Downing, K. H., Baldwin, J. M., & Henderson, R. (1996) J. Mol. Biol. 259, 393-421.
21. Harbison, G. S., Smith, S. O., Pardoen, J. A., Winkel, C., Lugtenburg, J., Herzfeld, J., Mathies, R., & Griffin, R. G. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 1706-1709.
22. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., & Pease, L. R. (1989) Gene 77, 51-69.
23. Honig, B., Dinur, U., Nakanishi, K., Balogh-Nair, V., Gawinowicz, M. A., Arnaboldi, M., & Motto, M. G. (1979) J. Am. Chem. Soc. 101, 7084-7086.
24. Hu, J., Griffin, R. G., & Herzfeld, J. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 8880-8884.
25. Krebs, M. P., & Khorana, H. G. (1993) J. Bacteriol. 175, 1555-1558.
26. Krebs, M. P., Mollaaghababa, R., & Khorana, H. G. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 1987-1991.
27. Lanyi, J. K. (1993) Biochim. Biophys. Acta 1183, 241-261.
28. le Coutre, J., Tittor, J., Oesterhelt, D., & Gerwert, K. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 4962-4966.
29. Lewis, A., Spoonhower, J., Bogomolni, R. A., Lozier, R. H., & Stoeckenius, W. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 4462-4466.
30. Ludlam, C. F. C., Sonar, S., Lee, C.-P., Coleman, M., Herzfeld, J., RajBhandary, U. L., & Rothschild, K. J. (1995) Biochemistry 34, 2-6.
31. Maeda, A., Sasaki, J., Yamazaki, Y., Needleman, R., & Lanyi, J. K. (1994) Biochemistry 33, 1713-1717.
32. Mathies, R., Freedman, T. B., & Stryer, L. (1977) J. Mol. Biol. 109, 367-372.
33. Mathies, R. A., Lin, S. W., Ames, J. B., & Pollard, W. T. (1991) Annu. Rev. Biophys. Biophys. Chem. 20, 491-518.
34. Mogi, T., Stern, L. J., Marti, T., Chao, B. H., & Khorana, H. G. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 4148-4152.
35. Nakagawa, M., Maeda, A., Ogura, T., & Kitagawa, T. (1991) J. Mol. Struct. 242, 221-234.
36. Oesterhelt, D., & Stoeckenius, W. (1974) Methods Enzymol. 31, 667-678.
37. Otto, H., Marti, T., Holz, M., Mogi, T., Lindau, M., Khorana, H. G., & Heyn, M. P. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 9228-9232.
38. Otto, H., Marti, T., Holz, M., Mogi, T., Stern, L. J., Engel, F., Khorana, H. G., & Heyn, M. P. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1018-1022.
39. Rath, P., Marti, T., Sonar, S., Khorana, H. G., & Rothschild, K. J. (1993) J. Biol. Chem. 268, 17742-17749.
40. Rath, P., Olson, K. D., Spudich, J. L., & Rothschild, K. J. (1994) Biochemistry 33, 5600-5606.
41. Rath, P., Spudich, E., Neal, D. D., Spudich, J. L., & Rothschild, K. J. (1996) Biochemistry 35, 6690-6696.
42. Richter, H.-T., Brown, L. S., Needleman, R., & Lanyi, J. K. (1996) Biochemistry 35, 4054-4062.
43. Roepe, P., Ahl, P. L., Das Gupta, S. K., Herzfeld, J., & Rothschild, K. J. (1987) Biochemistry 26, 6696-6707.
44. Roepe, P. D., Ahl, P. L., Herzfeld, J., Lugtenburg, J., & Rothschild, K. J. (1988) J. Biol. Chem. 263, 5110-5117.
45. Rothschild, K. J., Argade, P. V., Earnest, T. N., Huang, K. S., London, E., Liao, M. J., Bayley, H., Khorana, H. G., & Herzfeld, J. (1982) J. Biol. Chem. 257, 8592-8595.
46. Rothschild, K. J., Roepe, P., Lugtenburg, J., & Pardoen, J. A. (1984) Biochemistry 23, 6103-6109.
47. Rothschild, K. J., He, Y. W., Sonar, S., Marti, T., & Khorana, H. G. (1992) J. Biol. Chem. 267, 1615-1622.
48. Rothschild, K. J., Marti, T., Sonar, S., He, Y. W., Rath, P., Fischer, W., Bousché, O., & Khorana, H. (1993) J. Biol. Chem. 268, 27046-27052.
49. Rothschild, K. J., & Sonar, S. (1995) in CRC handbook of organic photochemistry and photobiology (Horspool, W. M., & Song, P.-S., Eds.) pp 1521-1544, CRC Press, Inc., London.
50. Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989) Molecular cloning: a laboratory manual, 2nd ed., Cold Spring Harbor Lab., Cold Spring Harbor, NY.
51. Sonar, S., Krebs, M. P., Khorana, H. G., & Rothschild, K. J. (1993) Biochemistry 32, 2263-2271.
52. Sonar, S., Lee, C. P., Coleman, M., Patel, N., Liu, X., Marti, T., Khorana, H. G., Rajbhandary, U. L., & Rothschild, K. (1994) Struct. Biol. 1, 512-517.
53. Stoeckenius, W., & Bogomolni, R. A. (1982) Annu. Rev. Biochem. 51, 587-616.
54. Subramaniam, S., Marti, T., & Khorana, H. G. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1013-1017.
55. Subramaniam, S., Greenhalgh, D. A., Rath, P., Rothschild, K. J., & Khorana, H. G. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 6873-6877.
56. Turner, G. J., Miercke, L. W., Thorgeirsson, T. E., Kilger, D., Betlach, M. C., & Stroud, R. M. (1993) Biochemistry 32, 1332-1337.
57. Váró, G., & Lanyi, J. K. (1989) Biophys. J. 56, 1143-1151.
58. Yokoyama, S. (1995) Mol. Biol. Evol. 12, 53-61.