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Volumn 119, Issue 13, 1997, Pages 3057-3067

Coenzyme B12 chemical precedent studies: Probing the role of the imidazole base-on motif found in B12-dependent methylmalonyl-CoA mutase

Author keywords

[No Author keywords available]

Indexed keywords

COBAMAMIDE; METHYLMALONYL COENZYME A MUTASE;

EID: 0030912979     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja963380q     Document Type: Article
Times cited : (68)

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    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
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    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
    • (1985) J. Chem. Soc., Dalton Trans. , pp. 1613
    • Baldwin, D.A.1    Betterson, E.A.2    Chemaly, S.M.3    Pratt, J.M.4
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    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
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    • Brown, K.L.1    Brooks, H.B.2
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    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
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    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
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    • Brown, K.L.1    Satyanarayana, S.2
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    • (f) See also ref 38 herein
    • assoc measurements: (a) Pailes, W. H.; Hogenkamp, H. P. C. Biochemistry 1968, 7, 4160. (b) Baldwin, D. A.; Betterson, E. A.; Chemaly, S. M.; Pratt, J. M. J. Chem. Soc., Dalton Trans. 1985, 1613. (c) Brown, K. L.; Brooks, H. B. Inorg. Chem. 1991, 30, 3420. (d) Brodie, J. D. Proc. Natl. Acad. Sci. U.S.A. 1969, 62, 461. (e) Brown, K. L.; Satyanarayana, S. Inorg. Chim. Acta 1992, 201, 113-119. (f) See also ref 38 herein.
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    • 10a the anticipated acid (or, in ROH solvents, ester) product from Co(III) oxidation of the initially produced aldehyde has never been unequivocally characterized.
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    • Johnson, A.W.1    Shaw, N.2
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    • -] could have a kinetically dominant rate of Co-C cleavage, a key reason why we chose the simpler system of N-MeIm for these initial studies of imidazole bases
    • -] could have a kinetically dominant rate of Co-C cleavage, a key reason why we chose the simpler system of N-MeIm for these initial studies of imidazole bases.
    • Sirovatka, J.M.1    Finke, R.G.2
  • 61
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    • the full paper
    • 10a for a listing of the earlier literature of Co-C heterolysis): (a) Gerards, L. E.H.; Bait, S. Recl. Trav. Chim. Pays-Bas 1994, 113, 137 (the full paper). (b) Gerards, L. E. H.; Bait, S. Recl. Trav. Chim. Pays-Bas 1992, 111, 411 (the preliminary communication).
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    • the preliminary communication
    • 10a for a listing of the earlier literature of Co-C heterolysis): (a) Gerards, L. E.H.; Bait, S. Recl. Trav. Chim. Pays-Bas 1994, 113, 137 (the full paper). (b) Gerards, L. E. H.; Bait, S. Recl. Trav. Chim. Pays-Bas 1992, 111, 411 (the preliminary communication).
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    • Gerards, L.E.H.1    Bait, S.2
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    • note
    • 10a Hence, chemical precedent studies do not appear to favor Co-C heterolysis for either of the two subclasses of AdoCbl-dependent enzymes.
  • 67
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    • note
    • 4 faster Co-C heterolysis in 2′,3′-dideoxyadenosylcobalamin which, unlike AdoCbl, they show can achieve the trans-antiperiplanar Co-Ca-Cβ-O arrangement preferred for Co-C heterolysis.
  • 68
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    • Special Publication No. 148, Golding, B. T., Griffin, R. J., Maskill, H., Eds.
    • (b) Kräutler, B. In Organic Reactivity: Physical and Biological Aspects; Special Publication No. 148, Golding, B. T., Griffin, R. J., Maskill, H., Eds.; The Royal Society of Chemistry: 1995; pp 209-222.
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    • 12; Dolphin, D., Ed.; John Wiley & Sons: New York, 1982; Vol. 1, p 45.
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    • +) seems to be in hand, the uncertainty about the solution vs solid state (and EXAFS vs crystallographic) Co(II)-N distance for Co(II)Cbl, possibly in different conformers, requires further clarification. (a) Sagi, I.; Wirt, M. D.; Chen, E.; Frisbie, S. M.; Chance, M. R. J. Am. Chem. Soc. 1990, 112, 8639. (b) Wirt, M. D.; Sagi, I.; Chen, E.; Frisbie, S. M.; Lee, R.; Chance, M. R. J. Am. Chem. Soc. 1991, 113, 5299. (c) Sagi, I.; Chance, M. R. J. Am. Chem. Soc. 1992, 114, 8061. (d) Kräutler, B.; Konrat, R.; Stupperich, E.; Fäber, G.; Gruber, K.; Kratky, C. Inorg. Chem. 1994, 33, 4128 (see p 4139). (e) Kratky, C.; Fäber, G.; Gruber, K.; Wilson, K.; Dauter, Z.; Nolting, H.-F.; Konrat, R.;
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 8639
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    • Dolphin, D., Ed.; John Wiley & Sons: New York; Chapter 3
    • 12; Dolphin, D., Ed.; John Wiley & Sons: New York; Vol. 1, Chapter 3.
    • 12 , vol.1
    • Glusker, J.P.1
  • 86
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    • note
    • 25c
  • 91
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    • note
    • +.
  • 93
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    • 11c
    • 11c
  • 98
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    • note
    • 301 We thank Professors T. Spiro, R. Banerjee, and L. Marzilli for helpful discussions of these points.
  • 108
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    • ("...Co-C Stretching Frequencies Reflect Bond Strength Changes in Alkyl Cobalamins, but are Unaffected by Trans Ligand Substitution"). Note that the author's use of the term "bond strength" as in the paper's text and title is not intended to mean BDE
    • (k) Dong, S.; Padmakumar, R.; Banerjee, R.; Spiro, T. G. J. Am. Chem. Soc. 1996, 118, 9182 ("...Co-C Stretching Frequencies Reflect Bond Strength Changes in Alkyl Cobalamins, but are Unaffected by Trans Ligand Substitution"). Note that the author's use of the term "bond strength" as in the paper's text and title is not intended to mean BDE.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 9182
    • Dong, S.1    Padmakumar, R.2    Banerjee, R.3    Spiro, T.G.4
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    • Saunders College Publishing
    • 30f elsewhere by, ultimately, equating the bottom portions of Morse and Hooke's Law potential wells; note that this yields a conceptually confusing equation derived for only the ground state, yet which contains a term (the BDE) which requires a difference between higher energy product-and ground-states). Drago also uses bond strength as a ΔH term (i.e., as we suggest above) and provides comments (p 194) discouraging both the attempts themselves and the underlying assumptions behind bond strength vs vibrational frequency shift correlations.
    • (1992) Physical Methods; 2nd Ed.
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  • 110
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    • note
    • 12-model results may still be consistent with one another (and even though they rigorously need not be, since the systems are different), depending upon whether or not transition state effects overwhelm effects on the AdoCbl ground state, as we believe they will (vide supra).
  • 113
    • 1842354740 scopus 로고    scopus 로고
    • note
    • 32a he has not considered the effects of the β-ligands, nor the possibility of π effects, in his correlations. For example, the graph on p 81 appears to be misleading, as many readers will (like us) probably interpret the "straight line" therein, instead of as a linear Co-N, Co-C bond length relationship, as a series of different cobalamin domains, based on the different α-ligands, of nearly perpendicular slopes to the line shown.
  • 123
    • 1842390362 scopus 로고    scopus 로고
    • note
    • (a) Basic MO theory of course dictates that the donor (or acceptor) properties of any ligand also depend on the relative energetics of the conjugate acceptor (or donor).
  • 126
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    • note
    • 37b destabilizing filled-filled (pπ ↔ dπ) interaction: (Matrix Presented) Note that Veillard only publishes the orbitals of the α-carbons; the full molecular orbitals shown here and in Figure 6 result from the minimization in the Spartan program (as described in the Experimental Section).
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    • (a) Pahor, N. B.; Attia, W. M.; Gercmia, S.; Randaccio, L. Acta Crystallogr. 1989, C45, 561. Note the 2.083 to 2.086 Å Co(III)-N(Im) bond lengths in the two RCo(cobaloxime)(1,2-dimethylimidazole) structures determined therein.
    • (1989) Acta Crystallogr. , vol.C45 , pp. 561
    • Pahor, N.B.1    Attia, W.M.2    Gercmia, S.3    Randaccio, L.4
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    • see entry 6 in Table 1
    • (c) The only Co-C BDE where imidazole is the trans-axial ligand is for PhCH(Me)Co(cobaloxime)(Im): Ng, F. T. T.; Rempel, G. L.; Halpern, J. J. Am. Chem. Soc. 1982, 104, 621 (see entry 6 in Table 1).
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 621
    • Ng, F.T.T.1    Rempel, G.L.2    Halpern, J.3
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    • note
    • 12 to the work of others on this issue.
  • 133
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    • (b) The finding of a six-, not five-, coordinate, solvated complex is just what organometallic chemistry has found in other systems and thus predicts, see: Strauss, S. Chem. Rev. 1993, 93, 927.
    • (1993) Chem. Rev. , vol.93 , pp. 927
    • Strauss, S.1


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