Population identification of western hemisphere shorebirds throughout the annual cycle

Molecular Ecology

Volumn 6, Issue 5, 1997, Pages 413-427

  Haig, S M ^a   Gratto Trevor, C L ^b   Mullins, T D ^a,d   Colwell, M A ^c  

^a FOREST AND RANGELAND ECOSYSTEM SCIENCE CENTER   (United States)

^b ENVIRONMENT CANADA   (Canada)

^c HUMBOLDT STATE UNIVERSITY   (United States)

^d FRESC Lab for Conservation Genetics

Author keywords

Charadriiformes; conservation genetics; migration; population differentiation; random amplified polymorphic DNA; RAPD; shorebirds

Indexed keywords

AVES; CALIDRIS ALPINA; CALIDRIS MAURI; CALIDRIS MELANOTOS; CALIDRIS PUSILLA; CHARADRIIFORMES; CHARADRIUS SEMIPALMATUS; CICONIIFORMES; LIMNODROMUS GRISEUS; LIMNODROMUS SCOLOPACEUS; LIMOSA HAEMASTICA; PHALAROPUS LOBATUS; SCOLOPACIDAE;

EID: 0030905297     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1997.t01-1-00203.x     Document Type: Article

References (65)

1. Aagaard JE, Volmer SS, Sorensen FC, Strauss SH (1995) Mitochondrial DNA products among RAPD profiles are frequent and strongly differentiated between races of Douglas fir. Molecular Ecology, 4, 441-447.
2. Allendorf FW, Waples RS (1995) Conservation genetics of salmonid fishes. In: Conservation Genetics: Case Histories from Nature (Avise JC, Hamrick JL, eds), pp. 238-280. Chapman and Hall, New York.
3. American Ornithologists' Union (1957) Checklist of North American Birds, 5th edn. American Ornithologists Union, Baltimore, MD.
4. Avise JC, Zink RM (1988) Molecular genetic divergence between avian sibling species: king and clapper rails, long-billed and short-billed dowitchers, boat-tailed and great-tailed grackles, and tufted and black-crested titmice. Auk, 105, 516-528.
5. Baker AJ (1992) Molecular genetics of Calidris with special reference to Knots. Wader Study Group Bulletin, 64, (Suppl.) 29-35.
6. Baker AJ, Lynch AM, Edwards CE (1985) Biochemical genetic studies of shorebirds: methods and applications. Wader Study Group Bulletin, 44, 34-39.
7. Baker AJ, Piersma T, Rosenmeier L (1994) Unraveling the intraspecific phylogeography of knots Calidris canutus: a progress report on the search for genetic markers. Journal of Ornithology, 135, 599-608.
8. Baker AJ, Strauch JG (1988) Genetic variation and differentiation in shorebirds. Acta XIX Congressus International Ornithologici. pp. 1639-1645.
9. Baker CS, Palumbi SR (1995) Population structure, molecular systematics, and forensic identification of whales and dophins. In: Conservation Genetics: Case Histories from Nature (Avise JC, Hamrick JL, eds), pp. 10-49. Chapman and Hall, New York.
10. Barrowclough GF (1983) Biochemical studies of microevolutionary processes. In: Perspectives in Ornithology (Brush AH, Clarke GA, eds.), pp. 223-261. Cambridge University Press, New York.
11. Black WCIV (1993) RAPDPLOT-FORTRAN program for analysis of genetic relationships among individuals using RAPD-PCR markers. Colorado State University, Fort Collins, CO.
12. Bowditch BM, Albright DG, Williams JGK, Braun MJ (1994) Use of randomly amplified polymorphic DNA markers in comparative genome studies. Methods in Enzymology, 224, 294-309.
13. Bowen BW, Avise JC (1995) Conservation genetics of marine turtles. In: Conservation Genetics: Case Histories from Nature (Avise JC, Hamrick JL, eds), pp. 190-237. Chapman and Hall, New York.
14. Browning MR (1977) Geographic variation in dunlin, Calidris alpina, of North America. Canadian Field Naturalist, 91, 391-393.
15. Browning MR (1991) Taxonomic comments on the dunlin Calidris alpina from northern Alaska and eastern Siberia. Bulletin of British Ornithological Club, 111, 140-145.
16. Colwell MA, Reynolds JD, Gratto CL, Schamel D, Tracy D (1988) Phalarope philopatry. In: Proceedings of the XIX International Ornithological Congress, Ottawa Ontario, pp. 585-593.
17. Cramp S, (ed) (1983) Handbook of the birds of Europe, the Middle East, and North Africa. Vol. III: Waders to Gulls. Oxford University Press, Oxford.
18. Dittmann DL, Zink RM (1991) Mitochondrial DNA variation among phalaropes and allies. Condor, 108, 771-779.
19. Felsenstein J (1993) PHYLIP 3.5c: Phylogeny Inference Package. University of Washington, Seattle WA.
20. Gauthreaux SA (1996) Bird migration: methodologies and major research trajectories (1945-1995). Condor, 98, 442-453.
21. Gibbs HL, Prior KA, Weatherhead PJ (1994) Genetic analysis of populations of threatened snake species using RAPD markers. Molecular Ecology, 3, 329-338.
22. Gratto-Trevor CL (1992) The semipalmated sandpiper. In: Birds of North America. No. 2. (Poole A, Stettenheim P, Gill F, eds). American Ornithologists Union, Philadelphia PA.
23. Gratto-Trevor CL, Dickson HL (1994) Confirmation of elliptical migration in a population of semipalmated sandpipers. Wilson Bulletin, 106, 78-90.
24. Greenwood JG (1986) Geographical variation and taxonomy of the dunlin Calidris alpina. Bulletin of the British Ornithologists Club, 106, 43-56.
25. Haig SM, Avise JC (1995) Avian conservation genetics. In: Conservation Genetics: Case Histories from Nature (Avise JC, Hamrick JL, eds), pp. 160-189. Chapman and Hall, New York.
26. Haig SM, Oring LW (1988a) Distribution and dispersal in the piping plover. Auk, 105, 630-638.
27. Haig SM, Oring LW (1988b) Genetic differentiation of piping plovers across North America. Auk, 105, 260-267.
28. Haig SM, Rhymer JM, Heckel DG (1994) Population differentiation in randomly amplified polymorphic DNA of red-cockaded woodpeckers. Molecular Ecology, 3, 581-595.
29. Haig SM, Bowman R, Mullins TD (1996) Population structure of red-cockaded woodpeckers in Florida: RAPDs revisited. Molecular Ecology, 5, 725-734.
30. Harrington BA, Morrison RIG (1979) Semipalmated sandpiper migration in North America. Studies in Avian Biology, 2, 83-100.
31. Hayman P, Marchant J, Prater T (1986) Shorebirds: an Identification Guide. Houghton Mifflin Co. Boston, MA.
32. Holmes RT (1972) Ecological factors influencing the breeding season schedule of western sandpipers (Calidris mauri) in subarctic Alaska. American Midland Naturalist, 87, 472-491.
33. Jehl JR (1963) An investigation of fall-migrating dowitchers in New Jersey. Wilson Bulletin, 75, 250-261.
34. Kambhampati S, Black WC IV, Rai KS (1992) Random amplified polymorphic DNA of mosquito species and populations (Dipteria: Culicidae): techniques, statistical analysis, and applications. Journal of Medical Entomology, 29, 939-945.
35. Kimberling DN, Ferreira AR, Shuster SM, Keim P (1996) RAPD marker estimation of genetic structure among isolated northern leopard frog populations. Molecular Ecology, 5, 521-530.
36. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91-99.
37. Lyons JE, Haig SM (1995) Fat content and stopover ecology of spring migrant semipalmated sandpipers in South Carolina. Condor, 97, 427-437.
38. MacLean SF, Holmes RT (1971) Bill lengths, wintering areas, and taxonomy of North American dunlin, Calidris alpina. Auk, 88, 893-901.
39. Manning TH, Hohn EO, MacPherson AH (1956) The Birds of Banks Island. National Museum of Canada Bulletin no. 143. Ottawa, Ontario.
40. Morrison RIG (1984) Migration systems of some New World shorebirds. In: Behavior of Marine Animals, Vol. 6 (Burger J, Olla BI, eds.), pp. 125-194. Plenum Press, New York.
41. Morrison RIG, Butler RW, Beyersbergen GW et al (1995) Potential Western Hemisphere Reserve Network Sites for Shorebirds in Canada, 2nd edn. Canadian Wildlife Service Technical Report Series no. 227. Canadian Wildlife Service, Ottawa, Ontario.
42. Myers JP, Morrison RIG, Antas PZ et al. (1987) Conservation strategies for migratory species. American Scientist, 75, 19-26.
43. Naish K-A, Warren M, Bardakci F et al. (1995) Multilocus DNA fingerprinting and RAPD reveal similar genetic relationships between strains of Oreochromis niloticus (Pisces: Cichlidae). Molecular Ecology, 4, 271-274.
44. Naranjo LG, Franke R, Beltran W (1994) Migration and wintering of western sandpipers on the Pacific coast of Columbia. Journal of Field Ornithology, 65, 194-200.
45. Nusser JA, Goto RM, Ledig DB, Fleischer RC, Miller MM (1996) RAPD analysis reveals low genetic variability in the endan-gered light-footed clapper rail. Molecular Ecology, 5, 463-472.
46. Oring LW, Able KP, Anderson DW, Baptista LF, Barlow JC, Gaunt AS, Gill FB, Wingfield JC (1988) Guidelines for the use of wild birds in research. Auk, 105 (Suppl.), 1A-44A.
47. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4, 347-354.
48. Page G, Fearis B (1971) Sexing western sandpipers by bill length. Bird Banding, 42, 297-298.
49. Pitelka FA (1950) Geographic variation and the species problem in the shorebird genus Limnodromus. University of California Publications in Zoology, 50, 1-108.
50. Rieseberg LH (1996) Homology among RAPD fragments in interspecific comparisons. Molecular Ecology, 5, 99-105.
51. Rogers JS (1972) Measures of genetic similarity and genetic distance. University of Texas Studies in Genetics, 7, 145-153.
52. Scribner KT, Arntzen JW, Burke T (1994) Comparative analysis of intra- and interpopulation genetic diversity in Bufo bufo, using allozyme, single-locus microsatellite, minisatellite, and multicus minisatellite data. Molecular Biology and Evolution, 11, 737-748.
53. Smith PW, Houghton NT (1985) Fidelity of semipalmated plovers to a migration stopover area. Journal of Field Ornithology, 55, 247-249.
54. Sneath PHA, Sokal RR (1973) Numerical Taxonomy. WH Freeman, San Francisco, CA.
55. Soikkeli M (1970) Dispersal of dunlin in relation to sites of birth and breeding. Ornis Fennica, 47, 1-9.
56. Swofford DL, Selander RB (1989) BIOSYS-1.7: a FORTRAN program for the comprehensive analysis of electrophoretic data in population genetics and systematics. Illinois Natural History Survey, Champaign IL.
57. Warnock ND, Gill RE (1996) Dunlin (Calidris alpina). In: Birds of North America, No. 203 (Poole A, Stettenheim P, Gill F, eds). American Ornithologists' Union, Philadelphia PA.
58. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research, 18, 7213-7218.
59. Wenink PW, Baker AJ (1996) Mitochondrial DNA lineages in composite flocks of migratory and wintering dunlins (Calidris alpina). Auk, 744-757.
60. Wenink PW, Baker AJ, Rosner H-U, Tilanus MGJ (1996) Global mitochondrial DNA phylogeny of Holarctic breeding dunlins (Calidris alpina). Evolution, 50, 318-330.
61. Wenink PW, Baker AJ, Tilanus MGJ (1993) Hypervariable-control-region sequences reveal global population structuring in a long-distance migrant shorebird, the Dunlin (Calidris alpina). Proceedings of the National Academy of Science USA, 90, 94-98.
62. Wenink PW, Baker AJ, Tilanus MGJ (1994) Mitochondrial control-region sequences in two shorebird species, the turnstone and the dunlin, and their utility in population genetic studies. Molecular Biology and Evolution, 11, 22-31.
63. Williams JGK, Kubelik AR, Livak KL, Rafalski JA, Tingley SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
64. Wright S (1965) The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19, 395-420.
65. Zink R, Rohwer S, Andreev AV, Dittmann D (1996) Trans-Beringia comparisons of mitochondrial DNA differentiation in birds. Condor, 97, 639-649.