Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC131, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1

Yeast

Volumn 13, Issue 5, 1997, Pages 483-487

  Poirey, Rémy ^a   Jauniaux, Jean Claude ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

Author keywords

CDC31; Chromosome SV; GCD1; PAC1; PNT1; RBL2; Saccharomyces cerevisiae; SEC63; SUG2; VPH1

Indexed keywords

ARTICLE; CHROMOSOME 15; DNA SEQUENCE; GENETIC ANALYSIS; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS;

CHROMOSOMES, FUNGAL; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

SACCHAROMYCES CEREVISIAE;

EID: 0030902697     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199704)13:5<483::AID-YEA105>3.0.CO;2-U     Document Type: Article

References (22)

1. Archer, J. E., Vega, L. R. and Solomon, F. (1995). Rb12p, a yeast protein that binds to beta-tubulin and participates in microtubule function in vivo. Cell 82, 425-434.
2. Azzi, A., Glerum, M., Koller, R., Mertens, W. and Spycher, S. (1993). The mitochondrial tricarboxylate carrier. J. Bioenerg. Biomembr. 25, 515-524.
3. 2+-binding proteins. Proc. Natl. Acad. Sci. USA. 83, 5512-5516.
4. Cigan, A. M., Bushman, J. L., Boal, T. R. and Hinnebusch, A. G. (1993). A protein complex of translational regulators of GCN4 mRNA is the guanine nucleotide-exchange factor for translation initiation factor 2 in yeast. Proc. Natl. Acad. Sci. USA 90, 5350-5354.
5. Coupe, S. A., Taylor, J. E., Isaac, P. G. and Roberts, J. A. (1994). Characterization of a mRNA that accumulates during development of oilseed rape pods. Plant Mol. Biol. 24, 223-227.
6. Feagin, J. E., Abraham, J. M. and Stuart, K. (1988). Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei. Cell 53, 413-422.
7. Hill, D. E. and Struhl, K. (1988). Molecular characterization of GCD1, a yeast gene required for general control of amino acid biosynthesis and cell-cycle initiation. Nucl. Acids Res. 16, 9253-9265.
8. Kadner, R. J. and McElhaney, G. (1978). Outer membrane-dependent transport systems in Escherichia coli: turnover of TonB function. J. Bacteriol. 134, 1020-1029.
9. Kalogeropoulos, A. (1995). Automatic intron detection in nuclear DNA sequences of Saccharomyces cerevisiae. Yeast 11, 555-565.
10. Ludewig, G. and Staben, C. (1994). Characterization of the PNT1 pentamidine resistance gene of Saccharomyces cerevisiae. Antimicrob. Agents Chemother. 38, 2850-2856.
11. Manolson, M. F., Proteau, D., Preston, R. A., et al. (1992). The VPH1 gene encodes a 95-kDa integral membrane polypeptide required for in vivo assembly and activity of the yeast vacuolar H(+)-ATPase. J. Biol. Chem. 267, 14294-14303.
12. Marck, C. (1988). 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucl. Acids Res. 16, 1829-1836.
13. Nakamura, T., Namba, H., Ohmoto, T., Liu, Y., Hirata, D. and Miyakawa, T. (1995). Cloning and characterization of the Saccharomyces cerevisiae SVS1 gene which encodes a serine- and threonine-rich protein required for vanadate resistance. Gene 165, 25-29.
14. Pallini, R., Guazzi, G. C., Cannella, C. and Cacace, M. G. (1991). Cloning and sequence analysis of the human liver rhodanese: comparison with the bovine and chicken enzymes. Biochem. Biophys. Res. Commun. 180, 887-893.
15. Pearson, W. R. and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
16. Sadler, I., Chiang, A., Kurihara, T., Rothblatt, J., Way, J. and Silver, P. (1989). A yeast gene important for protein assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an Escherichia coli heat shock protein. J. Cell Biol. 109, 2665-2675.
17. Senger, M., Glatting, K. H., Ritter, O. and Suhai, S. (1995). X-HUSAR, an X-based graphical interface for the analysis of genomic sequences. Comput. Methods Programs Biomed. 46, 131-141.
18. Seraphin, B., Simon, M., Boulet, A. and Faye, G. (1989). Mitochondrial splicing requires a protein from a novel helicase family. Nature 337, 84-87.
19. Sharp, P. M. and Li, W. H. (1987). The codon adaptation index, a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15, 1281-1295.
20. Sidhu, R. S., Mathewes, S. and Bollon, A. P. (1991). Selection of secretory protein-encoding genes by fusion with PHO5 in Saccharomyces cerevisiae. Gene 107, 111-118.
21. Thierry, A., Gaillon, L., Galibert, F. and Dujon, B. (1995). Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3·7 kb resolution. Yeast 11, 121-135.
22. Tsurumi, C., DeMartino, G. N., Slaughter, C. A., Shimbara, N. and Tanaka, K. (1995). cDNA cloning of p40, a regulatory subunit of the human 26S proteasome, and a homolog of the Mov-34 gene product. Biochem. Biophys. Res. Commun. 210, 600-608.