The ldh phylogeny for environmental isolates of Lactococcus lactis is consistent with rRNA genotypes but not with phenotypes

Applied and Environmental Microbiology

Volumn 63, Issue 2, 1997, Pages 694-702

  Urbach, Ena ^a   Daniels, Brent ^a   Salama, Maysoon S ^a   Sandine, William E ^a   Giovannoni, Stephen J ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

ARTICLE; BACTERIUM ISOLATION; CONTAMINATION; ENVIRONMENTAL FACTOR; FERMENTATION; GENE SEQUENCE; GENOTYPE; GROWTH INHIBITION; LACTOCOCCUS LACTIS; MILK PRODUCTION; NONHUMAN; OLIGONUCLEOTIDE PROBE; PHYLOGENY;

EID: 0030893402     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.2.694-702.1997     Document Type: Article

References (40)

1. Al-Zoreky, N., and W. E. Sandine. 1991. Lactococcus genus: a selective and differential agar medium. J. Food Sci. 56:1729-1730, 1734.
2. 1a.Daniels, B. Unpublished data.
3. Davey, G. P., and H. A. Heap. 1993. Appearance of the arginine phenotype in Lactococcus lactis subsp. cremoris 2204 following phage transduction. Can. J. Microhiol. 39:754-758.
4. Dear, S., and R. Staden. 1991. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res. 19:3907-3911.
5. Delorme, C., J.-J. Godon, S. D. Ehrlich, and P. Renault. 1994. Mosaic structure of large regions of the Lactococcus lactis suhsp. cremoris chromosome. Microhiol. 140:3053-3060.
6. Feirtag, J. M., J. P. Petzel, E. Pasalodos, K. A. Baldwin, and L. L. McKay. 1991. Thermosensitive plasmid replication, temperature-sensitive host growth, and chromosomal plasmid integration conferred by Lactococcus lactis subsp. cremoris lactose plasmids in Lactococcus lactis subsp. lactis. Appl. Environ. Microbiol. 57:539-548.
7. Felsenstein, J. 1993. PHYLIP, 3.5c ed. University of Washington, Seattle.
8. Garvie, E. I., and J. A. E. Farrow. 1982. Streptococcus lactis subsp. cremoris (Orla-Jensen) comb. nov. and Streptococcus lactis subsp. diacetylactis (Matuszewski et al.) nom. rev. comb. nov. Int. J. Syst. Bacteriol. 32:453-455.
9. Giovannoni, S. J. 1991. The polymerase chain reaction, p. 177-203. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, N.Y.
10. Godon, J.-J., C. Delorme, S. D. Ehrlich, and P. Renault. 1992. Divergence of genomic sequences between Lactococcus lactis subsp. lactis and Lactococcus lactis subsp. cremoris. Appl. Environ. Microbiol. 58:4045-4047.
11. Gordon, D. A., and S. J. Giovannoni. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62:1171-1177.
12. Griffin, H. G., S. R. Swindell, and M. J. Gasson. 1992. Cloning and sequence analysis of the gene encoding L-lactate dehydrogenase from Lactococcus lactis: evolutionary relationships between 21 different LDH enzymes. Gene 122:193-197.
13. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, Inc., New York, N.Y.
14. Khosravi, L., and W. E. Sandine. 1987. β-Lactamase-producing mutants of Streptococcus cremoris. J. Dairy Sci. 70:1529-1543.
15. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
16. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-148. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, N.Y.
17. Le Bourgeois, P., M. Lautier, L. van den Berghe, M. J. Gasson, and P. Ritzenthaler. 1995. Physical and genetic map of the Lactococcus lactis subsp. cremoris MG1363 chromosome: comparison with that of Lactococcus lactis subsp. lactis IL 1403 reveals a large genome inversion. J. Bacteriol. 177:2840-2850.
18. Le Bourgeois, P., M. Mata, and P. Ritzenthaler. 1991. Pulsed-field gel electrophoresis as a tool for studying the phylogeny and genetic history of lactococcal strains, p. 140-145. In G. M. Dunny, P. P. Cleary, and L. L. McKay (ed.), Genetics and molecular biology of streptococci, lactococci, and enterococci. American Society for Microbiology, Washington, D.C.
19. Llanos, R. M., A. J. Millier, and B. E. Davidson. 1992. Cloning, nucleotide sequence, expression, and chromosomal location of ldh, the gene encoding L-(+)-lactate dehydrogenase, from Lactococcus lactis. J. Bacteriol. 174:6959-6964.
20. Lowrie, R. J., R. C. Lawrence, L. E. Pearce, and E. L Richards. 1972. Cheddar cheese flavor. III. The growth of lactic streptococci during cheese-making and the effect on bitterness development. N. Z. J. Dairy Sci. Technol. 7:44-50.
21. McKay, L. L. 1983. Functional properties of plasmids in lactic streptococci. Antonie Leeuwenhoek 49:259.
22. 20a.Moineau, S., J. Fortier, H. W. Ackermann, and S. Pandian. 1992. Characterization of lactococcal bacteriophages from Quebec cheese plants. Can. J. Microbiol. 38:875-882.
23. Orla-Jensen, S. 1919. The lactic acid bacteria. Host, Copenhagen, Denmark.
24. Pitcher, D. G., N. A. Saunders, and R. J. Owens. 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:151-156.
25. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
26. Salama, M., W. Sandine, and S. J. Giovannoni. 1991. Development and application of oligonucleotide probes for identification of Lactococcus lactis subsp. cremoris. Appl. Environ. Microbiol. 57:1313-1318.
27. Salama, M. S., T. Musafija-Jeknic, W. E. Sandine, and S. J. Giovannoni. 1995. An ecological study of lactic acid bacteria: isolation of new strains of Lactococcus including Lactococcus lactis subsp. cremoris. J. Dairy Sci. 78: 1004-1017.
28. Salama, M. S., W. E. Sandine, and S. J. Giovannoni. 1993. Isolation of Lactococcus lactis subsp. cremoris from nature by colony hybridization with rRNA probes. Appl. Environ. Microbiol. 59:3941-3945.
29. Salama, M. S., W. E. Sandine, and S. J. Giovannoni. 1995. A milk-based method for detecting antimicrobial substances produced by lactic acid bacteria. J. Dairy Sci. 78:1219-1223.
30. Sandine, W. E. 1985. The streptococci, p. 5-23. In S. E. Gilliland (ed.), Bacterial starter cultures for foods. CRC Press, Boca Raton, Fla.
31. Schleifer, K. H., J. Kraus, C. Dvorak, R. Kilpper-Balz, J. D. Collins, and W. Fischer. 1985. Transfer of Streptococcus lactis and related streptococci to the genus Lactococcus gen. nov. Syst. Appl. Microbiol. 6:183-195.
32. Simons, G., M. Nijhuis, and W. M. de Vos. 1993. Integration and gene replacement in the Lactococcus lactis lac operon: induction of a cryptic phospho-β-glucosidase in LacG-deficient strains. J. Bacteriol. 175:5168-5175.
33. Swindell, S. R., H. G. Griffin, and M. J. Gasson. 1994. Cloning, sequencing and comparison of three lactococcal L-lactate dehydrogenase genes. Microbiol. 140:1301-1305.
34. Terzaghi, B. E., and W. E. Sandine. 1975. Improved medium for lactic streptococci and their bacteriophages. Appl. Microbiol. 29:807.
35. 32a. Thunnell, R. K. Personal communication.
36. Thunell, R. K., W. E. Sandine, and F. W. Bodyfelt. 1981. Phage-insensitive, multiple-strain starter approach to Cheddar cheese making. J. Dairy Sci. 64:2270-2277.
37. Vaughan, E. E., S. David, A. Harrington, C. Daly, G. F. Fitzgerald, and W. M. De Vos. 1995. Characterization of plasmid-encoded citrate permease (citP) genes from Leuconostoc species reveals high sequence conservation with the Lactococcus lactis citP gene. Appl. Environ. Microbiol. 61:3172-3176.
38. Vedamuthu, E. R., W. E. Sandine, and P. R. Elliker. 1966. Flavor and texture in Cheddar Cheese. I. Role of mixed strain lactic starter cultures. J. Dairy Sci. 49:144-150.
39. Vedamuthu, E. R., W. E. Sandine, and P. R. Elliker. 1966. Flavor and texture in Cheddar Cheese. II. Carbonyl compounds produced by mixed strain lactic starter cultures. J. Dairy Sci. 49:151-157.
40. von Wright, A., and M. Sibakov. 1993. Genetic modification of lactic acid bacteria, p. 161-198. In S. Salminen and A. von Wright (ed.), Lactic acid bacteria. Marcel Dekker, Inc., New York, N.Y.