Comparison of the complete nucleotide sequences of two isolates of lettuce mosaic virus differing in their biological properties

Virus Research

Volumn 47, Issue 2, 1997, Pages 167-177

  Revers, F ^a   Yang, S J ^a   Walter, J ^a   Souche, S ^a   Lot, H ^a   Le Gall, O ^a   Candresse, T ^a   Dunez, J ^a  

^a INRA   (France)

Author keywords

lettuce mosaic virus (LMV); nucleotide sequences; potyvirus; resistance breaking

Indexed keywords

ARTICLE; CONTROLLED STUDY; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT VIRUS; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA, VIRAL; GENOME, VIRAL; LETTUCE; MOLECULAR SEQUENCE DATA; POTYVIRUS; PROTEINS; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

LACTUCA; LETTUCE MOSAIC VIRUS; NIA; POTYVIRUS;

EID: 0030889745     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(96)01411-6     Document Type: Article

References (49)

1. Atreya, P.L., Atreya, C.D. and Pirone, T.P. (1991) Amino acid substitutions in the coat protein result in loss of insect transmissibility of a plant virus. Proc. Natl. Acad. Sci. USA 88, 7887-7891.
2. Atreya, C.D., Atreya, P.L., Thornbury, D.W. and Pirone, T.P. (1992) Site-directed mutations in the potyvirus HC-PRO gene affect helper component activity, virus accumulation, and symptom expression in infected tobacco plants. Virology 191, 106-111.
3. Bannerot, H., Boulidard, L., Marrou, J. and Duteil, M. (1969) Étude de l'hérédité de la tolérance au virus de la mosaique de la laitue chez la variété Gallega de Invernio. Études de Virologie. Ann. Phytopathol. 1, 219-226.
4. Berzal-herranz, A., De La Cruz, A., Tenllado, F., Diaz-ruiz, J.R., Lopez, L., Sanz, A.I., Vaquero, C., Serra, M.T. and Garcia-luque, I. (1995) The capsicum L3 gene-mediated resistance against the tobamoviruses is elicited by the coat protein. Virology 209, 498-505.
5. Bos, L., Huijberts, N. and Cuperus, C. (1994) Further observations on variation of lettuce mosaic virus in relation to lettuce (Lactuca sativa), and a discussion of resistance terminology. Eur. J. Plant Pathol. 100, 293-314.
6. Carrington, J.C., Freed, D.D. and Sanders, T.S. (1989) Autoproteolytic processing of potyvirus proteinase HC-Pro in Escherichia coli and in vitro. J. Virol. 63, 4459-4463.
7. Carrington, J.C. and Herndon, K.L. (1992) Characterization of the potyviral HC-Pro autoproteolytic cleavage site. Virology 187, 308-315.
8. Dinant, S., Lot, H., Albouy, J., Kuziak, C., Meyer, M. and Astier-Manifacier, S. (1991) Nucleotide sequence of the 3′ terminal region of lettuce mosaic potyvirus RNA shows a Gln/Val dipeptide at the cleavage site between the polymerase and the coat protein. Arch. Virol. 116 (1-4), 235-252.
9. Dinant, S. and Lot, H. (1992) Lettuce mosaic virus. Plant Pathol. 41, 528-542.
10. Dougherty, W.G., Parks, T.D., Cary, S.M., Bazan, J.F. and Fletterick, R.J. (1989) Characterization of the catalytic residues of the tobacco etch virus 49-kDa proteinase. Virology 172, 302-310.
11. Dougherty, W.G. and Parks, T.D. (1991) Post-translational processing of the tobacco etch virus 49-kDa small nuclear inclusion polyprotein: identification of an internal cleavage site and delimitation of VPg and proteinase domains. Virology 183, 449-456.
12. Fakhfakh, H., Vilaine, F. and Robaglia, C. (1995) Obtention 21 d'une copie entière d'ADNc du génome du virus Y de la pomme de terre (PVY) par PCR extra longue. Cinquièmes rencontres de virologie végétale CNRS/INRA, 23-27 janvier 95, Aussois, France.
13. Fichot, O. and Girard, M. (1990) An improved method for sequencing of RNA templates. Nucleic Acids Res. 18, 6162.
14. Gallie, D.R., Sleat, D.E., Watts, J.W., Turner, P.C. and Wilson, T.M.A. (1987) A comparison of eukariotic viral 5′-leader sequences as enhancers of mRNA expression in vivo. Nucleic Acids Res. 15, 8693-8711.
15. Gubler, U. and Hoffman, B.J. (1983) A simple and very efficient method for generating cDNA librairies. Gene 25, 263-269.
16. Hellman, G.M., Thornbury, D.W. and Pirone, T.P. (1990) Molecular analysis of tobacco vein mottling virus (TVMV) pathogenicity by infectious transcripts of chimeric potyviral cDNA genomes. Phytopathology 80, 1036 (abstract).
17. Jayaram, C., Hill, J.H. and Miller, W.A., (1992) Complete nucleotide sequences of two soybean mosaic virus strains differentiated by response of soybean containing the Rsv resistance gene. J. Gen. Virol. 73, 2067-2077.
18. Johansen, E., Edwards, M.C. and Hampton, R.O. (1994) Seed transmission of viruses: Current perspectives. Ann. Rev. Phytopathol. 32, 363-386.
19. Johansen, I.E., Keller, K.E., Dougherty, W.G. and Hampton, R.O. (1996) Biological and molecular properties of a pathotype P-1 and a pathotype P-4 isolate of pea seedborne mosaic virus. J. Gen. Virol. 77, 1329-1333.
20. Kamer, G. and Argos, P. (1984) Primary structural comparison of RNA-dependent polymerase from plant, animal and bacterial viruses. Nucleic Acids Res. 12, 7269-7282.
21. Kavanagh, T., Goulden, M., Santa Cruz, S., Chapman, S., Barker, I. and Baulcombe, D. (1992) Molecular analysis of a resistance-breaking strain of potato virus X. Virology 189, 609-617.
22. Klein, P.G., Klein, R.R., Rodriguez-Cerezo, E., Hunt, A.G. and Shaw, J.G. (1994) Mutational analysis of the tobacco vein mottling virus genome. Virology 204, 759-769.
23. Knorr, D.A. and Dawson, W.O. (1988) A point mutation in the tobacco mosaic virus capsid protein gene induces hypersensitivity in Nicotiana sylvestris. Proc. Natl. Acad. Sci. USA 85, 170-174.
24. Lain, S., Martin, M.T., Riechmann, J.L. and Garcia, J.A. (1991) Novel catalytic activity associated with positive-strand RNA virus infection: nucleic acid-stimulated ATPase activity of the plum pox potyvirus helicase-like protein. J. Virol. 65, 1-6.
25. Le Gall, O., Candresse, T., Brault, V., Bretout, C., Hibrand, L. and Dunez, J. (1988) Cloning full-length cDNA of grapevine chrome mosaic nepovirus. Gene 73, 67-75.
26. Le Gall, O., Lanneau, M., Candresse, T. and Dunez, J. (1995) The nucleotide sequence of the RNA-2 of an isolate of the English serotype of tomato black ring virus: RNA recombination in the history of nepoviruses. J. Gen. Virol. 76, 1279-1283.
27. Lutcke, H.A., Chow, K.C., Mickel, F.S., Moss, K.A., Kern, H.F. and Scheele, G.A. (1987) Selection for AUG initiation codons differs in plants and animals. EMBO J. 6, 43-48.
28. Maniatis, T., Fritsch, E.F. and Sambrook, J. (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
29. Mavankal, G. and Rhoads, R.E. (1991) In vitro cleavage at or near the N-terminus of the helper component protein in the tobacco vein mottling virus polyprotein. Virology 185, 721-731.
30. Meshi, T., Motoyoshi, F., Adachi, A., Watanabe, Y., Takamatsu, N. and Okada, Y. (1988) Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1. EMBO J. 7, 1575-1581.
31. Meshi, T., Motoyoshi, F., Maeda, T., Yoshiwoka, S., Watanabe, H. and Okada, Y. (1989) Mutations in the tobacco mosaic virus 30-kD protein gene overcome Tm-2 resistance in tomato. Plant Cell 1, 515-522.
32. Oh, C-S. and Carrington, J.C. (1989) Identification of the essential residues in potyvirus proteinase HC-Pro by site-directed mutagenesis. Virology 173, 692-699.
33. Padgett, H.S. and Beachy, R.N. (1993) Analysis of a tobacco mosaic virus strain capable of overcoming N gene-mediated resistance. Plant Cell 5, 577-586.
34. Pink, D.A.C., Lot, H. and Johnson, R. (1992a) Novel pathotypes of lettuce mosaic virus, breakdown of a durable resistance? Euphytica 63, 169-174.
35. Pink, D.A.C., Kostova, D. and Walkey, D.G.A. (1992b) Differentiation of pathotypes of lettuce mosaic virus. Plant Pathol. 41, 5-12.
36. Riechmann, J.L., Lain, S. and Garcia, J.A. (1992) Highlights and prospects of potyvirus molecular biology. J. Gen. Virol. 73, 1-16.
37. Robaglia, C., Durand-tardif, M., Tronchet, M., Boudazin, G., Astier-manifacier, S. and Casse-delbart, F. (1989) Nucleotide sequence of potato virus Y (N strain) genomic RNA. J. Gen. Virol. 70, 935-947.
38. Rodriguez-Cerezo, E., Klein, P.G. and Shaw, J.G. (1991) A determinant of disease symptom severity is located in the 3′-terminal noncoding region of the RNA of a plant virus. Proc. Natl. Acad. Sci. USA 88, 9863-9867.
39. Ryder, E.J. (1970) Inheritance of resistance to common lettuce mosaic. J. Amer. Soc. Hort. Sci. 95, 378-379.
40. Saito, T., Meshi, T., Takamatsu, N. and Okada, Y. (1987) Coat protein gene sequence of tobacco mosaic virus encodes a host response determinant. Proc. Natl. Acad. Sci. USA 84, 6074-6077.
41. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467.
42. Santa Cruz, S. and Baulcombe, D. C. (1993) Molecular analysis of potato virus X isolates in relation to the potato hypersensitivity gene Nx. Mol. Plant-Microb. Interact. 6, 707-714.
43. Shukla, D.D., Frenkel, M.J. and Ward, C.W. (1991) Structure and function of the potyvirus genome with special reference to the coat protein coding region. Can. J. Plant Pathol. 13, 178-191.
44. Shukla, D.D., Ward, C.W. and Brunt, A.A. (1994) Genome structure, variation and function. The Potyviridae, CAB International, Wallingford, UK, pp. 74-110.
45. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
46. Tomlinson, J.A. (1970) Lettuce mosaic virus. CMI/AAB Descriptions of Plant Viruses No. 9.
47. Verchot, J., Koonin, E.V. and Carrington, J.C. (1991) The 35-kDa protein from the N-terminus of the potyviral polyprotein functions as a third virus-encoded proteinase. Virology 185, 527-535.
48. Weber, H., Schultze, S. and Pfitzner, A.J.P. (1993) Two amino acid substitutions in the tomato mosaic virus 30-kilodalton movement protein confer the ability to overcome the Tm- 22 resistance gene in the tomato. J. Virol. 67, 6432-6438.
49. Zerbini, F.M., Koike, S.T. and Gilbertson, R.L. (1995) Biological and molecular characterization of lettuce mosaic potyvirus isolates from the Salinas Valley of California. Phytopathology 85, 746-752.