Sequence variation of the human immunodeficiency virus primer-binding site suggests the use of an alternative tRNA(Lys) molecule in reverse transcription

Journal of General Virology

Volumn 78, Issue 4, 1997, Pages 837-840

  Das, Atze T ^a   Klaver, Bep ^a   Berkhout, Ben ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; LYSINE TRANSFER RNA; PRIMER RNA; VIRUS RNA;

ARTICLE; BINDING SITE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION; RNA REPLICATION; RNA RNA HYBRIDIZATION; RNA SEQUENCE; VIRUS REPLICATION;

EID: 0030889470     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-78-4-837     Document Type: Article

References (24)

1. Aiyar, A., Ge, Z. & Leis, J. (1994). A specific orientation of RNA secondary structures is required for initiation of reverse transcription. Journal of Virology 68, 611-618.
2. Araya, A., Sarih, L. & Litvak, S. (1979). Reverse transcriptase mediated binding of primer tRNA to the viral genome. Nucleic Acids Research 6, 3831-3843.
3. Barat, C., Lullien, V., Schatz, O., Keith, G., Mugeyre, M. T., Grüninger-Leitch, F., Barré-Sinoussi, F., LeGrice, S. F. J. & Darlix, J. L. (1989). HIV-1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA. EMBO Journal 11, 3279-3285.
4. Berkhout, B. & Schoneveld, I. (1993). Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site. Nucleic Acids Research 21, 1171-1178.
5. Das, A. T. & Berkhout, B. (1995). Efficient extension of a misaligned tRNA-primer during replication of the HIV-1 retrovirus. Nucleic Acids Research 23, 1319-1326.
6. Das, A. T., Klaver, B. & Berkhout, B. (1995). Reduced replication of human immunodeficiency virus type 1 mutants that use reverse transcription primers other than the natural tRNA(3Lys). Journal of Virology 69, 3090-3097.
7. Han, J. H. & Harding, J. D. (1983). Using iodinated single-stranded M13 probes to facilitate rapid DNA sequence analysis - nucleotide sequence of a mouse lysine tRNA gene. Nucleic Acids Research 11, 2053-2064.
8. Hayenga, K., Hedgcoth, C., Harrison, M., Lin, V. K. & Ortwerth, B. J. (1986). Structural relationship between tRNA(Lys2) and tRNA(Lys4) from mouse lymphoma cells. Molecular and Cellular Biochemistry 71, 25-30.
9. Isel, C., Ehresmann, C., Keith, G., Ehresmann, B. & Marquet, R. (1995). Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). Journal of Molecular Biology 247, 236-250.
10. Jiang, M., Mak, J., Ladha, A., Cohen, E., Klein, M., Rovinski, B. & Kleiman, L. (1993). Identification of tRNAs incorporated into wild-type and mutant human immunodeficiency virus type 1. Journal of Virology 67, 3246-3253.
11. Levin, J. G. & Seidman, J. G. (1981). Effect of polymerase mutations on packaging of primer tRNAPro during murine leukemia virus assembly. Journal of Virology 38, 403-408.
12. Li, X., Mak, J., Arts, E. J., Gu, Z., Kleiman, L., Wainberg, M. A. & Parniak, M. A. (1994). Effects of alterations of primer-binding site sequences on human immunodeficiency virus type 1 replication. Journal of Virology 68, 6198-6206.
13. Li, X., Quan, Y., Arts, E. J., Li, Z., Preston, B. D., De Rocquigny, H., Roques, B. P., Darlix, J.-L., Kleiman, L., Parniak, M. A. & Wainberg, M. A. (1996). Human immunodeficiency virus type 1 nucleocapsid protein (NCp7) directs specific initiation of minus-strand DNA synthesis primed by human tRNALys3 in vitro: studies of viral RNA molecules mutated in regions that flank the primer binding site. Journal of Virology 70, 4996-5004.
14. Mak, J., Jiang, M., Wainberg, M. A., Hammarskjold, M. L., Rekosh, D. & Kleiman, L. (1994). Role of Pr160gag-pol in mediating the selective incorporation of tRNA(Lys) into human immunodeficiency virus type 1 particles. Journal of Virology 68, 2065-2072.
15. Myers, G., Wain-Hobson, S., Henderson, L. E., Korber, B., Jeang, K. T. & Pavlakis, G. N. (1994). Human Retroviruses and AIDS 1994. A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences. Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, N. Mex., USA.
16. Oude Essink, B. B., Das, A. T. & Berkhout, B. (1996). HIV-1 reverse transcriptase discriminates against non-self tRNA primers. Journal of Molecular Biology 264, 243-254.
17. Peden, K. W. C. & Martin, M. A. (1996). HIV, a Practical Approach, pp. 21-45. Edited by J. Karn. Oxford: IRL Press.
18. Peters, G. G. & Hu, J. (1980). Reverse transcriptase as the major determinant for selective packaging of tRNA's into avian sarcoma virus particles. Journal of Virology 36, 692-700.
19. Prats, A. C., Sarih, L., Gabus, C., Litvak, S., Keith, G. & Darlix, J. L. (1988). Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA. EMBO Journal 7, 1777-1783.
20. Raba, M., Limburg, K., Burghagen, M., Katze, J. R., Simsek, M., Heckman, J. E., Rajbhandary, U. L. & Gross, H. J. (1979). Nucleotide sequence of three isoaccepting lysine tRNAs from rabbit liver and SV40-transformed mouse fibroblasts. European Journal of Biochemistry 97, 305-318.
21. Sprinzl, M., Hartmann, T., Weber, J., Blank, J. & Zeidler, R. (1989). Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Research 17 (Suppl.).
22. Varmus, H. & Swanstrom, R. (1984). RNA Tumor Viruses, 2nd edn, pp. 369-512. Edited by R. Weiss, N. Teich, H. Varmus & J. Coffin. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
23. Vicenzi, E., Dimitrov, D. S., Engelman, A., Migone, T.-S., Purcell, D. F. J., Leonard, J., Englund, G. & Martin, M. A. (1994). An integration-defective U5 deletion mutant of human immunodeficiency virus type 1 reverts by eliminating additional long terminal repeat sequences. Journal of Virology 68, 7879-7890.
24. Wakefield, J. K., Wolf, A. G. & Morrow, C. D. (1995). Human immunodeficiency virus type 1 can use different tRNAs as primers for reverse transcription but selectively maintains a primer binding site complementary to tRNALys3. Journal of Virology 69, 6021-6029.