A kinetic study of triple-helix formation at a critical R · Y sequence of the murine c-Ki-ras promoter by (A,G)- and (G,T) oligonucleotides

European Journal of Biochemistry

Volumn 248, Issue 2, 1997, Pages 424-432

  Xodo, Luigi E ^a   Pirulli, Doroti ^a   Quadrifoglio, Franco ^b  

^a UNIVERSITY OF TRIESTE   (Italy)

^b UNIVERSITY OF UDINE   (Italy)

Author keywords

Activation energy; c Ki rat promoter; Kinetics; R R Y triple helices

Indexed keywords

ARTICLE; BASE PAIRING; DNA FOOTPRINTING; ELECTROPHORESIS; MOLECULAR DYNAMICS; NUCLEIC ACID STRUCTURE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REACTION ANALYSIS; TRIPLE HELIX;

CANIS; MURINAE;

EID: 0030886281     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.00424.x     Document Type: Article

References (46)

1. Alunni-Fabbroni, M., Manfioletti, G., Manzini, G. & Xodo, L. E. (1994) Eur. J. Biochem. 226, 831-839.
2. Alunni-Fabbroni, M., Manzini, G., Quadrifoglio, F. & Xodo, L. E. (1996a) Eur. J. Biochem. 238, 141-151.
3. Alunni-Fabbroni, M., Pirulli, D., Manzini, G. & Xodo, L. E. (1996b) Biochemistry 35, 16361-16369.
4. Balatskaya, S. V., Belotserkovskii, B. P. & Johnston, B. H. (1996) Biochemistry 35, 13328-13337.
5. Bates, P. J., Dosanjh, H. S., Jenkins, T. C., Laughton, C. A. & Neidle, S. (1995) Nucleic Acids Res. 23, 3627-3632.
6. Beal, P. A. & Dervan, P. B. (1991) Science 251, 1360-1363.
7. Cantor, C. R. & Schimmel, P. R. (1980) Biophysical chemistry, part III, W. H. Freeman and Company, San Francisco.
8. Chandler, S. P. & Fox, K. R. (1993) FEBS Lett. 332, 189-192.
9. Cheng, A.-J. & van Dyke, M. W. (1993) Nucleic Acids Res. 21, 5630-5635.
10. Collier, D. A., Mergny, J.-L., Thuong, N. T. & Hélène, C. (1991) Nucleic Acids Res. 19, 4219-4224.
11. Cooney, M., Czernuszewicz, G., Postel, E. H., Flint, S. J. & Hogan, M. (1988) Science 241, 456-459.
12. Craig, M. E., Crothers, D. M. & Doty, P. (1971) J. Mol. Biol. 62, 383-401.
13. Durland, R. H., Kessler, D. J., Gunnell, S., Duvic, M., Pettitt, P. M. & Hogan, M. E. (1991) Biochemistry 30, 9246-9255.
14. Duval-Valentin, G., Thuong, T. N. & Hélène, C. (1992) Proc. Natl Acad. Sci. USA 89, 504-508.
15. Faucon, B., Mergny, J. L. & Hélène, C. (1996) Nucleic Acids Res. 24, 3181-3188.
16. Fox, K. R. (1995) FEBS Lett. 357, 312-316.
17. Grant, K. B. & Dervan, P. B. (1996) Biochemistry 35, 12313-12319.
18. Grigoriev, M., Praseuth, D., Guieysse, A. L., Robin, P., Thuong, N. T., Hélène, C. & Harel-Ballan, A. (1993) Proc. Natl Acad. Sci. USA 90, 3501-3505.
19. Guschlbauer, W., Chantot, J.-F. & Thiele, D. (1990) J. Biomol. Struct. Dyn. 8, 491-511.
20. Hampel, K. J., Crosson, P. & Lee, J. S. (1991) Biochemistry 30, 4455-4459.
21. Hoffman, E. K., Trusko, S. P., Freeman, N. & George, D. (1987) Mol. Cell. Biol. 7, 2592-2595.
22. Hoffman, E. K., Trusko, S. P., Murphy, M. & George, D. (1990) Proc. Natl Acad. Sci. USA 87, 2705-2709.
23. Kochetkova, M. & Shannon, M. F. (1996) J. Biol. Chem. 271, 14438-14444.
24. Kovacs, A., Kandala, J. C., Weber, K. T. & Guntaka, R. V. (1996) J. Biol. Chem. 271, 1805-1812.
25. Maher L. J., Dervan, P. B. & Wolf, B. J. (1990) Biochemistry 29, 8820-8826.
26. McShan, M. W., Rossen, R. D., Laughter, A. H., Trial, J., Kessler, D. J., Zendegui, J. G., Hogan, M. E. & Orson, F. M. (1992) J. Biol. Chem. 267, 5712-5721
27. Musso, M. & van Dyke, M. W. (1995) Nucleic Acids Res. 23, 2320-2327.
28. Olivas, W. M. & Maher, L. J. III (1995) Biochemistry 34, 278-284.
29. Orson, F. M., Thomas, D. W., McShan, M. W., Kessler, D. J. & Hogan, M. E. (1991) Nucleic Acids Res. 19, 3435-3441.
30. Pilch, D. S., Leverson, C. & Shafer, R. H. (1991) Biochemistry 30, 6081-6087
31. Pörschke, D. & Eigen, M. (1971) J. Mol. Biol. 62, 361-381.
32. Postel, E. H., Flint, S. J., Kessler, D. J. & Hogan, M. E. (1991) Proc. Natl Acad. Sci. USA 88, 8227-8231.
33. Radhakrishnan, I., de los Santos, C. & Patel, D. J. (1991) J. Mol. Biol. 221, 1403-1418.
34. Rougée, M., Faucon, B., Barcelo, F., Giovannangeli, T., Garestier, T. & Hélène, C. (1992) Biochemistry 31, 9269-9278.
35. Roy, C. (1993) Nucleic Acids Res. 12, 2845-2852.
36. Russell, W. C., Precious, B., Martin, S. R. & Bayley, P. M. (1983) EMBO J. 2, 1647-1653.
37. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular cloning: a laboratory manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY.
38. Sekharudu, C. Y., Yathindra, N. & Sundaralingam, M. (1993) J. Biomol. Struct. Dyn. 11, 225-244.
39. Shindo, H., Torigoe, H. & Sarai, A. (1993) Biochemistry 32, 8963-8969.
40. Svinarchuk, F., Bertrand, J.-R. & Malvy, C. (1994) Nucleic Acids Res. 22, 3742-3747.
41. Svinarchuk, F., Debin, A., Bertrand, J.-R. & Malvy, C. (1996) Nucleic Acids Res. 24, 295-302.
42. Tabor, C. W. & Tabor, C. (1984) Annu. Rev. Biochem. 53, 749-791.
43. Xodo, L. E. (1995a) Eur. J. Biochem. 228, 918-926.
44. Xodo, L. E. (1995b) FEBS Lett. 370, 153-157.
45. Vasquez, K. M., Wensel, T. G., Hogan, M. E. & Wilson, J. H. (1995) Biochemistry 34, 7243-7251.
46. Yang, M., Ghosh, S. S. & Millar, D. P. (1994) Biochemistry 33, 15329-15337.