PspF and IHF bind co-operatively in the psp promoter-regulatory region of Escherichia coli

Molecular Microbiology

Volumn 25, Issue 3, 1997, Pages 473-481

  Jovanovic, Goran ^a,b   Model, Peter ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

^b UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

[No Author keywords available]

Indexed keywords

PLASMID DNA;

ARTICLE; BINDING SITE; DNA BINDING; DNA SEQUENCE; ENHANCER REGION; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION;

ESCHERICHIA; ESCHERICHIA COLI;

EID: 0030881602     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.4791844.x     Document Type: Article

References (44)

1. Austin, S., and Dixon, R. (1992) The prokaryotic enhancer-binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent. EMBO J 11: 2219-2228.
2. Ausubel, F.M. (1989) Current Protocols in Molecular Biology. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (eds). New York: Green Publishing Associates/Wiley Interscience.
3. Brissette, J.L., Russel, M., Weiner, L., and Model, P. (1990) Phage shock protein, a stress protein of Escherichia coli. Proc Natl Acad Sci USA 87: 862-866.
4. Buck, M., Miller, S., Drummond, M., and Dixon, R. (1986) Upstream activator sequences are present in the promoters of nitrogen fixation genes. Nature 320: 374-378.
5. Charlton, W., Cannon, W., and Buck, M. (1993) The Klebsiella pneumoniae nifJ promoter: analysis of promoter elements regulating activation by the NifA promoter. Mol Microbiol 7: 1007-1021.
6. Claverie-Martin, F., and Magasanik, B. (1991) Role of integration host factor in the regulation of the glnHp2 promoter of Escherichia coli. Proc Natl Acad Sci USA 88: 1631-1635.
7. Davis, N.G., Boeke, J.D., and Model, P. (1985) Fine structure of a membrane anchor domain. J Mol Biol 181: 111-121.
8. Ditto, M.D., Roberts, D., and Weisberg, R.A. (1994) Growth phase variation of integration host factor level in Escherichia coli. J Bacteriol 176: 3738-3748.
9. Engelhorn, M., Boccard, F., Murtin, C., Prentki, P., and Geiselmann, J. (1995) In vivo interaction of the Escherichia coli integration host factor with its specific binding sites. Nucleic Acids Res 23: 2959-2965.
10. Freundlich, M., Ramani, N., Mathew, E., Sirko, A., and Tsui, P. (1992) The role of integration host factor in gene expression in Escherichia coli. Mol Microbiol 6: 2557-2563.
11. Friedman, D.I. (1988) Integration host factor: a protein for all reasons. Cell 55: 545-554.
12. Goodrich, J.A., Schwartz, M.L., and McClure, W.R. (1990) Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res 18: 4993-5000.
13. Goosen, N., and Putte, P.v.d. (1995) The regulation of transcription initiation by integration host factor. Mol Microbiol 16: 1-7.
14. Greenstein, D., Zinder, N.D., and Horiuchi, K. (1988) Integration host factor interacts with the DNA replication enhancer of filamentous phage f1. Proc Natl Acad Sci USA 85: 6262-6266.
15. Hales, L.M., Gumport, R.I., and Gardner, J.F. (1994) Determining the DNA sequence elements required for binding integration host factor to two different target sites. J Bacteriol 176: 2999-3006.
16. Jovanovic, G., and Model, P. (1997) The RIB element in the goaG-pspF intergenic region of Escherichia coli. J Bacteriol 179: 3095-3102.
17. Jovanovic, G., Weiner, L., and Model, P. (1996) Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon. J Bacteriol 178: 1936-45.
18. Jovanovic, G., Dworkin, J., and Model, P. (1997) Autogenous control of PspF, the constitutively active enhancer-binding protein of Escherichia coli. J Bacteriol (in press).
19. Kahn, J.D., and Crothers, D.M. (1992) Protein-induced bending and DNA cyclization. Proc Natl Acad Sci USA 89: 6343-6347.
20. Kleerebezem, M., Crielaard, W., and Tommassen, J. (1996) Involvement of stress protein PspA (phage shock protein A) of Escherichia coli in maintenance of the protonmotive force under stress conditions. EMBO J 15: 162-171.
21. 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol Rev 53: 367-376.
22. Lutter, L.C., Halvorson, H.R., and Calladine, C.R. (1996) Topological measurement of protein-induced DNA bend angles. J Mol Biol 261: 620-633.
23. Model, P., Jovanovic, G., and Dworkin, J. (1997) The Escherichia coli phage shock protein (psp) operon. Mol Microbiol 24: 255-261.
24. Ninfa, A.J., Reitzer, L.J., and Magasanik, B. (1987) Initiation of transcription at the bacterial glnAp2 promoter by purified E. coli components is facilitated by enhancers. Cell 50: 1039-1046.
25. Nunes-Duby, S.E., Smith-Mungo, L.I., and Landy, A. (1995) Single base-pair precision and structural rigidity in a small IHF-induced DNA loop. J Mol Biol 253: 228-242.
26. 54-dependent promoter Pu of Pseudomonas putida. Proc Natl Acad Sci USA 92: 7277-7281.
27. Popham, D.L., Szeto, D., Keener, J., and Kustu, S. (1989) Function of a bacterial activator protein that binds to transcriptional enhancers. Science 243: 629-635.
28. Possot, O., d'Enfert, C., Reyes, I., and Pugsley, A.P. (1992) Pullulanase secretion in Escherichia coli K-12 requires a cytoplasmic protein and a putative polytopic cytoplasmic membrane protein. Mol Microbiol 6: 95-105.
29. Prentki, P., Chandler, M., and Galas, D.J. (1987) Escherichia coli integration host factor bends the DNA at the ends of IS1 and in an insertion hotspot with multiple IHF binding sites. EMBO J 6: 2479-2487.
30. Reitzer, L.J., and Magasanik, B. (1986) Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell 45: 785-792.
31. Rice, P.A., Yang, S., Mizuuchi, K., and Nash, H.A. (1996) Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87: 1295-1306.
32. Russel, M., and Kazmierczak, B. (1993) Analysis of the structure and subcellular location of filamentous phage pIV. J Bacteriol 175: 3998-4007.
33. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
34. 54-dependent nifH promoter. J Mol Biol 227: 602-620.
35. 54. Cell 62: 945-954.
36. Su, W., Porter, S.C., Kustu, S., and Echols, H. (1990) DNA-looping and enhancer activity: association between DNA-bound NtrC activator and RNA polymerase at the bacterial glnA promoter. Proc Natl Acad Sci USA 87: 5504-5473.
37. Wang, M.X., and Church, G.M. (1992) A whole genome approach to in vivo DNA-protein interactions in E. coli. Nature 360: 606-610.
38. Wedel, A., and Kustu, S. (1995) The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation. Genes Dev 9: 2042-2052.
39. Weiner, L., and Model, P. (1994) Role of an Escherichia coli stress-response operon in stationary-phase survival. Proc Natl Acad Sci USA 91: 2191-2195.
40. 54 and modulated by positive and negative feedback mechanisms. Genes Dev 5: 1912-23.
41. Weiner, L., Brissette, J.L., Ramani, N., and Model, P. (1995) Analysis of the proteins and cis-acting elements regulating the stress-induced phage shock protein operon. Nucleic Acids Res 23: 2030-2036.
42. Weiss, D.S., Batut, J., Klose, K.E., Keener, J., and Kustu, S. (1991) The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription. Cell 67: 155-167.
43. Yang, C.-C., and Nash, H.A. (1989) The interaction of E. coli IHF protein with its specific binding sites. Cell 57: 869-880.
44. Zulianello, L., Rosny, E.d.I.G.d., Ulsen, P.v., Putte, P.v.d., and Goosen, N. (1994) The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers. EMBO J 13: 1534-1540.