A 32 kb nucleotide sequence from the region of the lincomycin-resistance gene (22°-25°) of the Bacillus subtilis chromosome and identification of the site of the lin-2 mutation

Microbiology

Volumn 143, Issue 8, 1997, Pages 2775-2782

  Kumano, Miyuki ^a   Tamakoshi, Atsuo ^a   Yamane, Kunio ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

22 25 region; Bacillus subtilis; Genome sequencing; lin 2 mutation; Lincomycin resistance gene

Indexed keywords

ALPHA GLUCOSIDASE; ASPARAGINASE; BACTERIAL PROTEIN; CARRIER PROTEIN; ENZYME PRECURSOR; GENE PRODUCT; LINCOMYCIN; MEMBRANE PROTEIN; PHOSPHATASE; TELLURIUM DERIVATIVE;

AMINO ACID SEQUENCE; ANTIBIOTIC RESISTANCE; ARTICLE; BACILLUS SUBTILIS; BACTERIAL MEMBRANE; DRUG TRANSPORT; GENE FUNCTION; GENE MAPPING; GENE MUTATION; GENE SEQUENCE; GENE STRUCTURE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; REPRESSOR GENE; SEQUENCE HOMOLOGY;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 0030880044     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-143-8-2775     Document Type: Article

References (37)

1. Ahmed, M., Lyass, L., Markham, P. N., Taylor, S. S., Vazquez-Laslop, N. & Neyfakh, A. A. (1995). Two highly similar multidrug transporters of Bacillus subtilis whose expression is differentially regulated. J Bacteriol 177, 3904-3910.
2. Awade, A., Cleuziat, P., Gonzales, T. & Robert-Baudouy, J. (1992). Characterization of the pcp gene encoding the pyrrolidone carboxy-peptidase of Bacillus subtilis. FEBS Lett 305, 67-73.
3. Bindra, P. S., Knowles, R. & Buckley, K. M. (1993). Conservation of the amino acid sequence of SV2, a transmembrane transporter in synaptic vesicles and endocrine cells. Gene 137, 299-302.
4. Brunskill, E. W. & Bayles, K. W. (1996). Identification and molecular characterization of a putative regulatory locus that affects autolysis in Staphylococcus aureus. J Bacteriol 178, 611-618.
5. Chou, P. Y. & Fasman, G. D. (1978). Prediction of the secondary structure of proteins from their amino acid sequences. Adv Enzymol 47, 45-148.
6. Dartois, V., Baulard, A., Schanck, K. & Colson, C. (1992). Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim Biophys Acta 1131, 253-260.
7. Fleischmann, R. D., Adams, M. D., White, O. & 37 other authors (1995). Whole-genome random sequencing of Haemophilus influenzae Rd. Science 269, 496-512.
8. Goldthwaite, C., Dubnau, D. & Smith, I. (1970). Genetic mapping of antibiotic resistance in markers Bacillus, subtilis. Proc Natl Acad Sci USA 65, 96-103.
9. Guilfoile, P. G. & Hutchinson, C. R. (1992a). Sequence and transcriptional analysis of the Streptomyces glaucescens tcmAR tetracenomycin C resistance and repressor gene loci. J Bacteriol 174, 3651-3658.
10. Guilfoile, P. G. & Hutchinson, C. R. (1992b). The Streptomyces glaucescens TcmR protein represses transcription of the divergently oriented tcmR and tcmA genes by binding to an intergenic operator region. J Bacteriol 174, 3659-3666.
11. Harford, N. & Sueoka, N. (1970). Chromosomal location of antibiotic resistance markers in Bacillus subtilis. J Mol Biol 51, 267-286.
12. Kempf, B. & Bremer, E. (1995). OpuA, an osmotically regulated binding protein-dependent transport system for the osmoprotectant glycine betaine in Bacillus subtilis. J Biol Chem 270, 16701-16713.
13. Lampel, K. A., Uratani, B., Chaudhry, G. R., Ramaley, R. F. & Rudikoff, S. (1986). Characterization of the developmentally regulated Bacillus subtilis glucose dehydrogenase gene. J Bacteriol 166, 238-243.
14. Loessner, M. J., Wendlinger, G. & Scherer, S. (1995). Heterogeneous endolysins in Listeria monocytogenes bacteriophages. A new class of enzyme and evidence for conserved holin genes within the siphoviral lysis cassettes. Mol Microbiol 16, 1231-1241.
15. Lomovskaya, O. & Lewis, K. (1992). emr, an Escherichia coli locus for multidrug resistance. Proc Natl Acad Sci USA 89, 8938-8942.
16. Minton, N. P., Bullman, H. M. S., Scawen, M. D., Atkinson, T. & Gilbert, H. J. (1986). Nucleotide sequence of the Erwinia chrysanthemi NCPPB1066 L-asparaginase gene. Gene 46, 25-35.
17. Mueller, J. P., Bukusoglu, G. & Sonenshein, A. L. (1992). Transcriptional regulation of Bacillus subtilis glucose starvation-inducible genes: control of gsiA by the ComP-ComA signal transduction system. J Bacteriol 174, 4361-4373.
18. Nakao, M., Nakayama, T., Kakudo, A., Inohara, M., Harada, M., Omura, F. & Shibano, Y. (1994). Structure and expression of a gene coding thermostable α-glucosidase with a broad substrate specificity from Bacillus sp. SAM1606. Eur J Biochem 220, 293-300.
19. Neyfakh, A. A., Bidnenko, V. E. & Chen, L. B. (1991). Efflux-mediated multidrug resistance in Bacillus subtilis: similarities and dissimilarities with the mammalian system. Proc Natl Acad Sci USA 88, 4781-4785.
20. Nomura, S., Yamane, K., Sasaki, T., Yamasaki, M., Tamura, G. & Maruo, B. (1978). Tunicamycin-resistant mutants and chromosomal locations of mutational sites in Bacillus subtilis. J Bacteriol 136, 818-821.
21. Ogasawara, N., Nakai, S. & Yoshikawa, H. (1994). Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res 1, 1-14.
22. Ogawa, K., Akagawa, E., Nakamura, K. & Yamane, K. (1995). Determination of a 21548 bp nucleotide sequence around the 24° region of the Bacillus subtilis chromosome. Microbiology 141, 269-275.
23. Perego, M., Glaser, P. & Hoch, J. A. (1996). Aspartyl-phosphate phosphatases deactivate the response regulator components of the sporulation signal transduction system in Bacillus subtilts. Mol Microbiol 19, 1151-1157.
24. Peschke, U., Schmidt, H., Zhang, H.-Z. & Piepersberg, W. (1995). Molecular characterization of the lincomycin-production gene cluster of Streptomyces lincolnensis 78-11. Mol Microbiol 16, 1137-1156.
25. Postle, K., Nguyen, T. T. & Bertrand, K. P. (1984). Nucleotide sequence of the repressor gene of the TN10 tetracydine resistance determinant. Nucleic Acids Res 12, 4849-4863.
26. Rouch, D. A., Cram, D. S., Diberardino, D., Littlejohn, T. G. & Skurray, R. A. (1990). Efflux-mediated antiseptic resistance gene qacA from Staphylococcus aureus: common ancestry with tetracycline- and sugar-transport proteins. Mol Microbiol 4, 2051-2062.
27. Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A. & Arnheim, N. (1985). Enzymic amplification of β-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230, 1350-1354.
28. Saito, H. & Miura, K. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
29. Sampson, J. S., O'Connor, S. P., Stinson, A. R., Tharpe, J. A. & Russell, H. (1994). Cloning and nucleotide sequence analysis of psaA, the Streptococcus pneumoniae gene encoding a 37-kilodalton protein homologous to previously reported Streptococcus sp. adhesins. Infect Immun 62, 319-324.
30. Skinner, R., Cundliffe, E. & Schmidt, F. J. (1983). Site of action of a ribosomal RNA methylase responsible for resistance to erythromycin and other antibiotics. J Biol Chem 258, 12702-12706.
31. Tercero, J. A., Lacalle, R. A. & Jimenez, A. (1993). The pur8 gene from the pur cluster of Streptomyces alboniger encodes a highly hydrophobic polypeptide which confers resistance to puromycin. Eur J Biochem 218, 963-971.
32. Triglia, T., Peterson, M. G. & Kemp, D. J. (1988). A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res 16, 8186.
33. Watanabe, K., Chishiro, K., Kitamura, K. & Suzuki, Y. (1991). Proline residues responsible for thermostability occur with high frequency in the loop regions of an extremely thermostable oligo1,6-glucosidase from Bacillus thermoglucosidasius KP1006. J Biol Chem 266, 24287-24294.
34. Whelan, K. F., Colleran, E. & Taylor, D. E. (1995). Phage inhibition, colicin resistance, and tellurite resistance are encoded by a single cluster of genes on the IncHI2 plasmid R478. J Bacteriol 177, 5016-5027.
35. Wilson, G. A. & Bott, K. F. (1968). Nutritional factors influencing the development of competence in the Bacillus subtilis transformation system. J Bacteriol 95, 1439-1449.
36. Yamane, K., Kumano, M. & Kurita, K. (1996). The 25°-36° region of the Bacillus subtilis chromosome: determination of the sequence of a 146 kb segment and identification of 113 genes. Microbiology 142, 3047-3056.
37. Zhang, H.-Z., Schmidt, H. & Piepersberg, W. (1992). Molecular cloning and characterization of two lincomycin-resistance genes, lmrA and lmrB, from Streptomyces lincolnensis 78-11. Mol Microbiol 6, 2147-2157.