Three-dimensional structure of Serratia marcescens nuclease at 1.7 Å resolution and mechanism of its action

FEBS Letters

Volumn 412, Issue 1, 1997, Pages 217-222

  Lunin, V Yu ^a   Levdikov, V M ^b   Shlyapnikov, S V ^c   Blagova, E V ^b   Lunin, V V ^d   Wilson, K S ^e   Mikhailov, A M ^b  

^a INSTITUTE OF MATHEMATICAL PROBLEMS OF BIOLOGY   (Russian Federation)

^b SHUBNIKOV INSTITUTE OF CRYSTALLOGRAPHY   (Russian Federation)

^c ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^d MOSCOW STATE UNIVERSITY   (Russian Federation)

^e EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Catalytic mechanism; Endonuclease; Sequence analysis; Serratia marscescens; X ray structure

Indexed keywords

BACTERIAL ENZYME; ENDONUCLEASE;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS; SERRATIA MARCESCENS; X RAY DIFFRACTION;

AMINO ACID SEQUENCE; BINDING SITES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; ENDODEOXYRIBONUCLEASES; ENDORIBONUCLEASES; HYDROGEN BONDING; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); SERRATIA; SERRATIA MARCESCENS;

EID: 0030877888     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(97)00512-7     Document Type: Article

References (28)

1. Filimonova, M.N., Baratova, L.A., Vospelmnova, N.D., Zhetova, A.O. and Leshinskaya, J.B. (1981) Biokhimiya [In Russian.] 46, 1660-1665.
2. Ball, T.K., Sanrugger, P.N. and Benedik, M.J. (1987) Gene 57, 183-192.
3. Biedermann, K., Jepsen, P.K., Riise, E. and Svedsen, J. (1989) Carlsberg Res. Commun. 54, 17-27.
4. Miller, M.D. and Krause, K.L. (1996) Prot. Sci. 5, 24-34.
5. Filimonova, M.N., Dementiev, A.A., Leshinskaya, J.B., Bakulina, G.Yu. and Shlyapnikov, S.V. (1991) Biokhimiya [In Russian.] 56, 508-512.
6. Bannikova, G.E., Blagova, E.V., Dementiev, A.A., Morgunova, E.Yu., Mikhailov, A.M., Shlyapnikiv, S.V., Varlamov, V.P. and Vainshtein, B.K. (1991) Biochem. Int. 23, 813-822.
7. Pedersen, J., Filimonova, M., Roepstorff, P. and Biederman, K. (1993) Biochim. Biophys. Acta 1202, 13-21.
8. Vincent, R.D., Hofmann, T.T. and Zassenhhaus, H.P. (1988) Nucleic Acids Res. 16, 3297-3312.
9. Zassehhaus, H.P. and Denniger, G. (1994) Curr. Genet. 25, 142-149.
10. Cofe, J. and Ruiz-Carrillo, A. (1993) Science 261, 765-769.
11. Muro-Pastor, A.M., Kuritz, T., Flores, E., Herrero, A. and Wolk, C.P. (1994) J. Bacteriol. 176, 1093-1098.
12. Miller, M.D., Benedik, M.J., Sillivanova, M.C., Shipley, N.S. and Krause, K.L. (1991) J. Mol. Biol. 222, 27-30.
13. Miller, M.D., Tanner, J., Alpaugh, M., Benedik, M.J. and Krause, K.L. (1994) Nat. Struct. Biol. 1, 461-468.
14. Brunger, A.T. (1992) Nature (London) 355, 472-474.
15. Lunin, V.Yu. and Skovoroda, T.P. (1995) Acta Cryst. A51, 880-887.
16. Urzhumtsev, A.G., Skovoroda, T.P. and Lunin, V.Yu. (1966) J. Appl. Cryst. 29, 741-744.
17. Urzhumtsev, A.G., Lunin, V.Yu. and Vernoslova, E.A. (1989) J. Appl. Cryst. 22, 500-506.
18. Ivanov, M.E. and Urzhumtsev, A.G. Joint CCP4 and ESF-EACBM, (1995) Newslett. Prot. Cryst. 31, 20-22.
19. Tong, H., Guillemette, J.G., Mauk, A.G., Smith, M. and Brayer, C.D. (1994) J. Appl. Cryst. 27, 421-426.
20. Brunger, A.T. (1988) X-PLOR Manual, Yale University Press, New Haven, CT.
21. Jones, T.A. (1978) J. Appl. Cryst. 11, 268-272.
22. Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Acta Cryst. A47, 110-119.
23. Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thonton, J.M. (1993) J. Appl. Cryst. 26, 283-291.
24. Worrall, A.F. and Connolly, B.A. (1990) J. Biol. Chem. 265, 21889-21895.
25. Weston, S.A., Lahm, A. and Suck, D. (1992) J. Mol. Biol. 226, 1237-1256.
26. Mehdi, S. and Gerlt, J.A. (1984) Biochemistry 23, 4844-4852.
27. Friedhoff, M.J., Gimadutdinow, O. and Pingond, A. (1994) Nucleic Acids Res. 22, 3280-3297.
28. Tanford, C. and Roxby, R. (1972) Biochemistry 11, 2192-2198.