DNA probe and PCR-specific reaction for Lactobacillus plantarum

Journal of Applied Microbiology

Volumn 82, Issue 6, 1997, Pages 783-790

  Quere, F ^a,b   Deschamps, A ^a   Urdaci, M C ^a  

^a UNIVERSITÉ DE BORDEAUX   (France)

^b UNICOPA Nutrition Animale   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLI; CLONING; DNA; PROBES;

DNA FRAGMENT; DNA HYBRIDIZATION; DNA POLYMERASE; DNA PROBE; DOT BLOTS; LACTOBACILLUS PLANTARUM; POLYMORPHIC DNA ANALYSIS; RANDOMLY AMPLIFIED POLYMORPHIC DNA; RAPID DETECTION; SPECIFIC DETECTION;

POLYMERASE CHAIN REACTION;

BACTERIAL DNA;

ARTICLE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; DNA HYBRIDIZATION; DNA PROBE; LACTOBACILLUS PLANTARUM; MOLECULAR CLONING; NONHUMAN; POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); LACTOBACILLUS PLANTARUM;

EID: 0030871370     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.1997.00157.x     Document Type: Article

References (45)

1. Abazinge, M.D.A., Fontenot, J.P., Allen, V.G. and Flick, G.J. (1993) Ensiling characteristics of crab waste and wheat straw treated with different additives. Journal of Agricultural and Food Chemistry 41, 657-661.
2. Birnboim, H.C. and Doly, J. (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Research 7, 1513-1523.
3. Bringel, F., Curk, M.C. and Hubert, J.C. (1995) Characterization of Lactobacilli species by nucleic acid hybridizations. Proposition for a new species related with L. plantarum: L. paraplantarum. Book of Abstracts. Lactic Acid Bacteria Conference, Cork, Ireland.
4. Castellanos, I., Vékris, A. and Deschamps, A. (1993) Elaboration of strain-specific probe for probiotic lactobacilli. FEMS Microbiology Reviews 12, 153.
5. Cocconcelli, P.S., Triban, E., Basso, M. and Bottazzi, V. (1991) Use of DNA probes in the study of silage colonization by Lactobacillus and Pediococcus strains. Journal of Applied Bacteriology 71, 296-301.
6. Collins, M.D., Rodrigues, U., Ash, C., Aguirre, M., Farrow, J.A.E., Martinez-Murcia, A. et al. (1991) Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiology Letters 77, 5-12.
7. Dellaglio, F., Botazzi, V. and Trovatelli, L.D. (1973) Deoxyribonucleic acid homology and base composition in some thermophilic lactobacilli. Journal of General Microbiology 74, 289-297.
8. Delley, M., Mollet, B. and Hottinger, H. (1990) DNA probe for Lactobacillus delbrueckii. Applied and Environmental Microbiology 56, 1967-1970.
9. Feinberg, A.P. and Vogelstein, B. (1984) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Analytical Biochemistry 132, 6-13.
10. Fox, G.E., Stackebrandt, R.B., Hespell, J., Gibson, J., Maniloff, T.A., Dyer, R.S. et al. (1980) The phylogeny of prokaryotes. Science 209, 457-463.
11. Fujisawa, T., Benno, Y., Yaeshima, T. and Mitsuoka, T. (1992) Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). International Journal of Systematic Bacteriology 32, 487-491.
12. Hertel, C., Ludwig, W., Obst, M., Vogel, R.F., Hammes, W.P. and Schleifer, K.-H. (1991) 23S rRNA-targeted oligonucleotide probes for the rapid identification of meat Lactobacilli. Systematic and Applied Microbiology 14, 173-177.
13. Johansson, M.L., Quednau, M., Molin, G. and Ahrné, S. (1995) Randomly amplified polymorphic DNA (RAPD) for rapid typing of Lactobacillus strains. Letters in Applied Microbiology 21, 155-159.
14. Johnson, J.L., Phelps, C.F., Cummins, C.S., London, J. and Gasser, F. (1980) Taxonomy of the Lactobacillus acidophilus group. International Journal of Systematic Bacteriology 30, 53-68.
15. Kingler, J.D. and Johnson, A.R. (1988) A rapid nucleic acid hybridization assay for Listeria in foods. Food Technology 41, 66-70.
16. Klijn, N., Weerkamp, A.H. and de Vos, W.M. (1991) Identification of mesophilic lactic acid bacteria by using polymerase chain reaction-amplified variable regions of 16S rRNA and specific DNA probes. Applied and Environmental Microbiology 57, 3390-3393.
17. Lassén, T.M. (1994) Evaluation of conditions for fermentation of fish offal. Agricultural Science in Finland 4, 11-17.
18. Luchansky, J.B., Tennant, M.C. and Klaenhammer, T.R. (1991) Molecular cloning and DNA polymorphisms in Lactobacillus acidophilus and Lactobacillus gasseri. Journal of Dairy Science 74, 3293-3302.
19. Lücke, F.K. (1994) Fermented meat products. Food Research International 27, 299-307.
20. Mauguin, S. and Novel, G. (1994) Characterization of lactic acid bacteria isolated from seafood. Journal of Applied Bacteriology 76, 616-625.
21. Merry, R.J., Dhanoa, M.S. and Theodorou, M.K. (1995) Use of freshly cultured lactic acid bacteria as silage inoculants. Grass and Forage Science 50, 112-123.
22. Meunier, J.R. and Grimont, P.A. (1993) Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Research Microbiology 144, 373-379.
23. Nakagawa, T., Shimada, M., Mukai, H., Asada, K., Kato, I., Fujino, K. and Sato, T. (1994) Detection of alcohol-tolerant Hiochi bacteria by PCR. Applied and Environmental Microbiology 60, 637-640.
24. Naumann, D., Helm, D. and Labischinski, H. (1991) Microbiological characterization by FT-IR spectroscopy. Nature 351, 81-82.
25. Okayama, H. and Berg, P. (1982) High efficiency cloning of full-length cDNA. Molecular and Cellular Biology 2, 161-170.
26. Pederson, C.S. (1979) Microbiology of Food Fermentations. Westport, CT: AVI Publishing Co.
27. Petrick, H.A.R., Ambrosio, R.E. and Holzapfel, W.H. (1988) Isolation of a DNA probe for Lactobacillus curvatus. Applied and Environmental Microbiology 54, 405-408.
28. Pilloud, N. and Mollet, B. (1990) DNA probes for the detection of Lactobacillus helveticus. Systematic and Applied Microbiology 13, 345-349.
29. Pot, B., Hertel, C., Ludwig, W., Descheemaeker, P., Kersters, K. and Schleifer, K.-H. (1993) Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and RNA-targeted oligonucleotide probe hybridization. Journal of General Microbiology 139, 513-517.
30. Pot, B., Ludwig, W., Kersters, K. and Schleifer, K.-H. (1994a) Taxonomy of lactic acid bacteria. In Bacteriocins in Lactic Acid Bacteria ed. De Vuyst, L. and Vandamme, E.J. pp. 13-90. Glasgow, UK: Blackie Academic and Professional.
31. Pot, B., Vandamme, P. and Kersters, K. (1994b) Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics ed. Goodfellow, M. and O'Donnell, A.G. pp. 493-521. New York : John Wiley and Sons Ltd.
32. Richter, L., Ehrmann, M., Fanta, D., Bohak, I. and Ludwig, W. (1995) Comparative RNA sequence analysis of lactic acid bacteria isolated from beer. Book of Abstracts. Lactic Acid Bacteria Conference, Cork, Ireland.
33. Rodtong, S. and Tannock, G.W. (1993) Differentiation of Lactobacillus strains by ribotyping. Applied and Environmental Microbiology 59, 3480-3484.
34. Roussel, Y., Colmin, C., Simonet, J.M. and Decaris, B. (1993) Strain characterization, genome size and plasmid content in the Lactobacillus acidophilus group. Journal of Applied Bacteriology 74, 549-556.
35. Ruiz-Barba, J.L., Cathcart, D.P., Warner, P.J. and Jiménez-Diaz, R. (1994) Use of Lactobacillus plantarum LPCO10, a bacteriocin producer, as a starter culture in spanish-style green olive fermentations. Applied and Environmental Microbiology 60, 2059-2064.
36. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual ed. Ford, N., Nolan, C. and Ferguson, M. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
37. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences USA 74, 5463-5467.
38. Schleifer, K.-H. (1990) DNA probes in food microbiology. Food Biotechnology 4, 585-589.
39. Stahl, M., Molin, F., Persson, A., Ahrné, S. and Stahl, S. (1990) Restriction endonuclease patterns and multivariate analysis as a classification tool for Lactobacillus spp. International Journal of Systematic Bacteriology 40, 189-193.
40. Tzanetakis, N. and Litopoulou-Tzanetakis, E. (1992) Changes in numbers and kinds of lactic acid bacteria in Feta and Teleme, two greek cheeses from ewes' milk. Journal of Dairy Science 75, 1389-1393.
41. Urlings, H.A.P., Bijker, P.G.H. and Van Logtestijn, J.G. (1993) Fermentation of raw poultry by-products for animal nutrition. Journal of Animal Science 71, 2420-2426.
42. Vogel, R.F., Lohmann, M., Nguyen, M., Weller, A.N. and Hammes, W.P. (1993) Molecular characterization of Lactobacillus curvatus and Lact. sake isolated from sauerkraut and their application in sausage fermentations. Journal of Applied Bacteriology 74, 295-300.
43. Weinberg, Z.G., Ashbell, G., Yaira Hen and Azrieli, A. (1993) The effect of applying lactic acid bacteria at ensiling on the aerobic stability of silages. Journal of Applied Bacteriology 75, 512-518.
44. Wernars, K., Heuvelman, C.J., Chakraborty, T. and Notermans, S.H.W. (1991) Use of the PCR for the direct detection of Listeria monocytogenes in soft cheese. Journal of Applied Bacteriology 70, 121-126.
45. Yamamoto, S. and Harayama, S. (1995) PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Applied and Environmental Microbiology 61, 1104-1109.