Objectively judging the quality of a protein structure from a ramachandran plot

Bioinformatics

Volumn 13, Issue 4, 1997, Pages 425-430

  Hooft, Rob W W ^a   Sander, Chris ^a   Vriend, Gerrit ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CALIBRATION; COMPUTER PROGRAM; DATA BASE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; QUALITY CONTROL; SEQUENCE HOMOLOGY; STATISTICAL ANALYSIS;

ALGORITHMS; BIOMETRY; DATABASES, FACTUAL; EVALUATION STUDIES; MOLECULAR STRUCTURE; PROTEIN FOLDING; PROTEINS; SOFTWARE;

EID: 0030870075     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.4.425     Document Type: Article

References (10)

1. Banner.D., Kokkinidis.M. and Tsemoglou.D. (1987) Structure of the ColEl Rop protein at 1.7A resolution. J. Mol. Bioi, 196, 657-675.
2. Bernstein.F.C. Koetzle.T.F., Williams.G.J.B., Meyer.E.F.Jr, Brice.M.D., Rodgers.J.R.. Kennard.O., Shimanouchi.T. and Tasumi, M. (1977) The protein data bank: a computer-based archival file for macro-molecular structures. J. Mol. Biol., 112, 535-542.
3. Dauter.Z., Sieker.L.C. and Wilson.K.S. (1992) Refinement of rubredoxin from Desulfovibrio vulgaris at 1.0 A with and without restraints. Ada Crystallogr., B48, 42-59.
4. Hooft, R.W.W., Sander.C. and Vriend.G. (1996a) Verification of protein structures: Side-chain planarity. J. Appl. Crystallogr., 29, 714-716.
5. Hooft.R.W.W., Vriend.G.. Sander.C. and Abola.E.E. (1996b) Errors in protein structures. Nature, 381, 272.
6. Kabsch.W. and Sander.C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen bond and geometrical features. Biopoiymers, 22, 2577-2637.
7. Laskowski, R.A., MacArthur.M.W., Moss.D.S. and Thornton.J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
8. Ramachandran.G.N., Ramakrishnan.C. and Sasisekharan.V. (1963) Stereo-chemistry of polypeptide chain conformations. J. Mol. Bioi, 7, 95-99.
9. MacArthur.M.W. and Thornton.J.M. (1996) Deviations from planarity of the peptide bond in peptides and proteins. J. Mol. Biol., 264, 1180-1195.
10. Vriend, G. (1990) WHAT IF: a molecular modelling and drug design program. J. Mol. Graph.. 8, 52-56.