Comparison of partial 16S rRNA gene sequences obtained from activated sludge bacteria

Applied Microbiology and Biotechnology

Volumn 48, Issue 1, 1997, Pages 73-79

  Vainio, E J ^a   Moilanen, A ^b   Koivula, T T ^c   Bamford, D H ^d   Hantula, J ^a  

^a FINNISH FOREST RESEARCH INSTITUTE   (Finland)

^b Division of Population Biology ^*  (Finland)

^c UNIVERSITY OF HELSINKI   (Finland)

^d UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

ACTIVATED SLUDGE; ARTICLE; BACTERIAL GROWTH; COMPARATIVE STUDY; DNA CONTENT; GENE SEQUENCE; MOLECULAR BIOLOGY; MOLECULAR CLONING; NONHUMAN; POLYMERASE CHAIN REACTION; RNA SEQUENCE; WASTE WATER MANAGEMENT;

BACTERIA; BACTERIAL PROTEINS; CLASSIFICATION; CLONING, MOLECULAR; DNA, RIBOSOMAL; GENE AMPLIFICATION; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; VARIATION (GENETICS);

BACTERIA (MICROORGANISMS); POSIBACTERIA; PROTEOBACTERIA;

EID: 0030852243     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002530051017     Document Type: Article

References (36)

1. Allen LA (1944) The bacteriology of activated sludge. J Hyg (Camb) 43: 424-431
2. Amann R, Springer N, Ludwig W, Görtz H-D, Schleifer K-H (1991) Identification in situ and phylogeny of uncultured bacterial endosymbionts. Nature 351: 161-163
3. Amann R, Ludwig W, Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169
4. American Public Health Association (1985) standard methods for the examination of water and wastewater, 16th ed. American Public Health Association, Washington, D.C.
5. Bairoch A (1992) PC/GENE: the nucleic acid and protein sequence analysis software system. University of Geneva, Switzerland, (TM) IntelliGenetics Inc. release 6.70
6. Benedict RG, Carlson DA (1971) Aerobic heterotrophic bacteria in activated sludge. Water Res 5: 1023-1030
7. Birnboim HC, Doly J (1979) A rapid alcaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7: 1513-1523
8. Blaim H, Seiler H, Baumgarten J (1984) Microbial population in an activated sludge treatment plant of a chemical combine. Z Wasser Abwasser Forsch 17: 37-41
9. Bond PL, Hugenholz P, Keller J, Blackall L (1995) Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61: 1910-1916
10. Burks C, Cinkosky MJ, Fisher WM, Gilna P., Hayden JE-D, Keen GM, Kelly M, Kristofferson D, Lawrence J (1992) GenBank. Nucleic Acids Res 20: 2065-2069
11. Butterfield CT (1935) Studies of sewage purification II. A zoogloeaforming bacterium isolated from activated sludge. Public Health Rep 50: 1267-1274
12. DeLong EF, Wickham GS, Pace NR (1989) Phylogenetic stains: ribosomal-RNA-based probes for the identification of single cells. Science 243: 1360-1363
13. Dias FF, Bhat JV (1964) Microbial ecology of activated sludge. Appl Microbiol 12: 412-417
14. Fuhrman JA, McCallum K, Davis AA (1992) Novel major archaebacterial group from marine plankton. Nature 356: 148-149
15. Giovannoni SJ, Britschi TB, Moyer CL, Field KG (1990) Genetic diversity in Sargasso Sea bacterioplancton. Nature 345: 60-63
16. Gosink JJ, Staley JT (1995) Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water. Appl Environ Microbiol 61: 3486-3489
17. Hantula J, Kurki A, Vuoriranta P, Bamford DH (1991a) Rapid classification of bacterial strains by SDS-polyacrylamide gel electrophoresis: population dynamics of the dominant dispersed phase bacteria of activated sludge. Appl Microbiol Biotechnol 34: 551-555
18. Hantula J, Kurki A, Vuoriranta P, Bamford DH (1991b) Ecology of bacteriophages infecting activated sludge bacteria. Appl Environ Microbiol 57: 2147-2151
19. Koivula TT, Hantula J (1997) Diversity within bacterial isolates hybridizing with Comamonas probe ppT. J Basic Microbiol 37: 129-137
20. Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82: 6955-6959
21. Manz W, Wagner M, Amann R, Schleifer K (1994) In situ characterization of the microbial consortia active in two wastewater treatment plants. Water Res 28: 1715-1723
22. Olkkonen VM, Bamford DH (1989) Quantitation of the adsorption and penetration stages of bacteriophage φ6 penetration. Virology 171: 229-238
23. Olsen GJ, Woese CR, Overbeek R (1994) The winds of (evolutionary) change: breathing new life into microbiology. J Bacteriol 176: 1-6
24. Palleroni NJ (1994) Some reflections on bacterial diversity. ASM News 60: 537-540
25. Prakasam TBS, Dondero NC (1967) Aerobic heterotrophic bacterial populations of sewage and activated sludge. Appl Microbiol 15: 461-467
26. Russel R, Bartow E (1916) Bacteriological study of sewage purification by aeration. Univ Ill Bull, State Water Surv Ser 13: 348-358
27. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
28. Seiler H, Blaim H (1982) Population shifts in activated sludge from sewage treatment plants of the chemical industry: a numerical cluster analysis. Eur J Appl Microbiol Biotechnol 14: 97-104
29. Sneath PHA, Sokal RR (1973) Numerical taxonomy: the principles and practice of numerical classification. Freeman, San Francisco
30. Tsai Y-L, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57: 1070-1074
31. Wagner M, Amann R, Lemmer H, Schleifer K-H (1993) Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59: 1520-1525
32. Wagner M, Erhart R, Manz W, Amann R, Lemmer H, Wedi D, Schleifer K-H (1994a) Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol 60: 792-800
33. Wagner M, Assmus B, Hartmann A, Hutzler P, Amann R (1994b) In situ analysis of microbial consortia in activated sludge using fluorecently labelled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy. J Microsc 176: 181-187
34. Wallner G, Erhart R, Amann R (1995) Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl Environ Microbiol 61: 1859-1866
35. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Truper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464
36. Woese CR (1987) Bacterial evolution. Microbiol Rev 51: 221-271