메뉴 건너뛰기




Volumn 73, Issue 2, 1997, Pages 959-965

Local dynamics of DNA probed with optical absorption spectroscopy of bound ethidium bromide

Author keywords

[No Author keywords available]

Indexed keywords

ETHIDIUM BROMIDE;

EID: 0030851434     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(97)78128-1     Document Type: Article
Times cited : (8)

References (30)
  • 1
    • 0022818742 scopus 로고
    • The role of the solvent on the binding of ethidium bromide to DNA in alcohol-water mixtures
    • Baldini, G., and G. Varani. 1985. The role of the solvent on the binding of ethidium bromide to DNA in alcohol-water mixtures. Biopolymers. 25:2187-2208.
    • (1985) Biopolymers , vol.25 , pp. 2187-2208
    • Baldini, G.1    Varani, G.2
  • 2
    • 0024622091 scopus 로고
    • Low temperature spectroscopy of DNA-intercalator ethidium
    • Baldini, G., and G. Vegetti. 1989. Low temperature spectroscopy of DNA-intercalator ethidium. J. Lumin. 43:41-49.
    • (1989) J. Lumin. , vol.43 , pp. 41-49
    • Baldini, G.1    Vegetti, G.2
  • 3
    • 0028133298 scopus 로고
    • Stereodynamic properties of the cooperative homodimeric Scapharca inaequivalvis hemoglobin studied through optical absorption spectroscopy and ligand rebinding kinetics
    • Boffi, A., E. Chiancone, D. Verzili, L. Cordone, A. Cupane, M. Leone, V. Militello, E. Vitrano, E. E. Di Iorio, and W. Yu. 1994. Stereodynamic properties of the cooperative homodimeric Scapharca inaequivalvis hemoglobin studied through optical absorption spectroscopy and ligand rebinding kinetics. Biophys. J. 67:1713-1723.
    • (1994) Biophys. J. , vol.67 , pp. 1713-1723
    • Boffi, A.1    Chiancone, E.2    Verzili, D.3    Cordone, L.4    Cupane, A.5    Leone, M.6    Militello, V.7    Vitrano, E.8    Di Iorio, E.E.9    Yu, W.10
  • 4
    • 0016738438 scopus 로고
    • DNA/ethidium reaction kinetics: Demonstration of direct ligand transfer between DNA binding sites
    • Bresloff, J. R., and D. M. Crothers. 1975. DNA/ethidium reaction kinetics: demonstration of direct ligand transfer between DNA binding sites. J. Mol. Biol. 95:103-123.
    • (1975) J. Mol. Biol. , vol.95 , pp. 103-123
    • Bresloff, J.R.1    Crothers, D.M.2
  • 5
    • 0003751509 scopus 로고
    • W. H. Freeman and Co., San Francisco
    • Cantor, C. R., and P. R. Schimmel. 1980. Biophysical Chemistry, Part II. W. H. Freeman and Co., San Francisco. 386-389.
    • (1980) Biophysical Chemistry , Issue.2 PART , pp. 386-389
    • Cantor, C.R.1    Schimmel, P.R.2
  • 6
    • 0342571788 scopus 로고
    • Resonance Raman spectra of highly fluorescent molecules: Free and DNA-bonded ethidium bromide
    • E. D. Scneider, J. Brand Muller, W. Kiefer, B. Schrader and H. W. Schrotter, editors. Schulz, Freiburg
    • Chinsky, L., P. Y. Turpin, and M. Duquesne. 1976. Resonance Raman spectra of highly fluorescent molecules: free and DNA-bonded ethidium bromide. Proceedings of the 5th International Conference on Raman Spectroscopy. E. D. Scneider, J. Brand Muller, W. Kiefer, B. Schrader and H. W. Schrotter, editors. Schulz, Freiburg. 196-197.
    • (1976) Proceedings of the 5th International Conference on Raman Spectroscopy , pp. 196-197
    • Chinsky, L.1    Turpin, P.Y.2    Duquesne, M.3
  • 7
    • 0028894632 scopus 로고
    • Conformation of short DNA fragments by modulated fluorescence polarization anisotropy
    • Collini, M., G. Chirico, G. Baldini, and M. E. Bianchi. 1995. Conformation of short DNA fragments by modulated fluorescence polarization anisotropy. Biopolymers. 36:211-225.
    • (1995) Biopolymers , vol.36 , pp. 211-225
    • Collini, M.1    Chirico, G.2    Baldini, G.3    Bianchi, M.E.4
  • 8
    • 0022467258 scopus 로고
    • Optical absorption spectra of deoxy- and oxy-hemoglobin in the temperature range 300-20 K. Relation with protein dynamics
    • Cordone, L., A. Cupane, M. Leone, and E. Vitrano. 1986. Optical absorption spectra of deoxy-and oxy-hemoglobin in the temperature range 300-20 K. Relation with protein dynamics. Biophys. Chem. 24: 259-275.
    • (1986) Biophys. Chem. , vol.24 , pp. 259-275
    • Cordone, L.1    Cupane, A.2    Leone, M.3    Vitrano, E.4
  • 9
    • 33748516778 scopus 로고    scopus 로고
    • Conformational properties of nickel(II) octaethylporphyrin in solution. 2. A low-temperature optical absorption spectroscopy study
    • Cupane, A., M. Leone, L. Cordone, H. Gilch, W. Dreybrodt, E. Unger, and R. Schweitzer-Stenner. 1996. Conformational properties of nickel(II) octaethylporphyrin in solution. 2. A low-temperature optical absorption spectroscopy study. J. Phys. Chem. 100:14192-14197.
    • (1996) J. Phys. Chem. , vol.100 , pp. 14192-14197
    • Cupane, A.1    Leone, M.2    Cordone, L.3    Gilch, H.4    Dreybrodt, W.5    Unger, E.6    Schweitzer-Stenner, R.7
  • 10
    • 0028641221 scopus 로고
    • Low temperature optical spectroscopy of native and azide reacted Cu, Zn bovine superoxide dismutase. A structural dynamics study
    • Cupane, A., M. Leone, V. Militello, M. E. Stroppolo, F. Polticelli, and A. Desideri. 1994. Low temperature optical spectroscopy of native and azide reacted Cu, Zn bovine superoxide dismutase. A structural dynamics study. Biochemistry. 33:15103-15109.
    • (1994) Biochemistry , vol.33 , pp. 15103-15109
    • Cupane, A.1    Leone, M.2    Militello, V.3    Stroppolo, M.E.4    Polticelli, F.5    Desideri, A.6
  • 11
    • 0029584775 scopus 로고
    • Low temperature optical spectroscopy of cobalt in Cu, Co superoxide dismutase. A structural dynamics study of the solvent unaccessible metal site
    • Cupane, A., M. Leone, V. Militello, M. E. Stroppolo, F. Polticelli, and A. Desideri. 1995a. Low temperature optical spectroscopy of cobalt in Cu, Co superoxide dismutase. A structural dynamics study of the solvent unaccessible metal site. Biochemistry. 34:16313-16319.
    • (1995) Biochemistry , vol.34 , pp. 16313-16319
    • Cupane, A.1    Leone, M.2    Militello, V.3    Stroppolo, M.E.4    Polticelli, F.5    Desideri, A.6
  • 12
    • 0028922168 scopus 로고
    • Low temperature optical absorption spectroscopy: An approach to the study of stereodynamic properties of hemeproteins
    • Cupane, A., M. Leone, E. Vitrano, and L. Cordone. 1995b. Low temperature optical absorption spectroscopy: an approach to the study of stereodynamic properties of hemeproteins. Eur. Biophys. J. 23:385-398.
    • (1995) Eur. Biophys. J. , vol.23 , pp. 385-398
    • Cupane, A.1    Leone, M.2    Vitrano, E.3    Cordone, L.4
  • 13
    • 0027137933 scopus 로고
    • Structure-dynamics-function relationships in Asian elephant (Elephas maximus) myoglobin. An optical spectroscopy and flash-photolysis study on functionally important motions
    • Cupane, A., M. Leone, E. Vitrano, L. Cordone, U. R. Hiltpold, K. H. Winterhalter, W. Yu, and E. E. Di Iorio. 1993. Structure-dynamics-function relationships in Asian elephant (Elephas maximus) myoglobin. An optical spectroscopy and flash-photolysis study on functionally important motions. Biophys. J. 65:2461-2472.
    • (1993) Biophys. J. , vol.65 , pp. 2461-2472
    • Cupane, A.1    Leone, M.2    Vitrano, E.3    Cordone, L.4    Hiltpold, U.R.5    Winterhalter, K.H.6    Yu, W.7    Di Iorio, E.E.8
  • 14
    • 0026700192 scopus 로고
    • Protein dynamics: Vibrational coupling, spectral broadening mechanisms and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape
    • Di Pace, A., A. Cupane, M. Leone, E. Vitrano, and L. Cordone. 1992. Protein dynamics: vibrational coupling, spectral broadening mechanisms and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape. Biophys. J. 63:475-484.
    • (1992) Biophys. J. , vol.63 , pp. 475-484
    • Di Pace, A.1    Cupane, A.2    Leone, M.3    Vitrano, E.4    Cordone, L.5
  • 15
    • 0242283006 scopus 로고
    • Electronic structure of ethidium bromide
    • Giacomoni, P. U., and M. Le Bret. 1973. Electronic structure of ethidium bromide. FEBS Lett. 29:227-230.
    • (1973) FEBS Lett. , vol.29 , pp. 227-230
    • Giacomoni, P.U.1    Le Bret, M.2
  • 16
    • 0042784153 scopus 로고
    • On the flexibility of DNA: Time-resolved fluorescence polarization of intercalated quinacrine and 9-amino-6-cloro-2-methoxyacridine
    • Härd, T., P. Fan, D. Magde, and D. R. Kearns. 1989. On the flexibility of DNA: time-resolved fluorescence polarization of intercalated quinacrine and 9-amino-6-cloro-2-methoxyacridine. J. Phys. Chem. 93:4338-4345.
    • (1989) J. Phys. Chem. , vol.93 , pp. 4338-4345
    • Härd, T.1    Fan, P.2    Magde, D.3    Kearns, D.R.4
  • 17
    • 0017412768 scopus 로고
    • Visualization of drug-nucleic acid interactions at atomic resolution. II. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium: 5-iodocytidylyl (3′-5′) guanosine
    • Jain, S. C., C. C. Tsai, and H. M. Sobell. 1977. Visualization of drug-nucleic acid interactions at atomic resolution. II. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium: 5-iodocytidylyl (3′-5′) guanosine. J. Mol. Biol. 114:317-331.
    • (1977) J. Mol. Biol. , vol.114 , pp. 317-331
    • Jain, S.C.1    Tsai, C.C.2    Sobell, H.M.3
  • 18
    • 0030061303 scopus 로고    scopus 로고
    • Low temperature optical spectroscopy of low spin ferric heme proteins
    • Leone, M., A. Cupane, and L. Cordone. 1996. Low temperature optical spectroscopy of low spin ferric heme proteins. Eur. Biophys. J. 24: 117-124.
    • (1996) Eur. Biophys. J. , vol.24 , pp. 117-124
    • Leone, M.1    Cupane, A.2    Cordone, L.3
  • 19
    • 0028575357 scopus 로고
    • Thermal broadening of Soret band in heme complexes and in heme-proteins: Role of the iron dynamics
    • Leone, M., A. Cupane, V. Militello, and L. Cordone. 1994. Thermal broadening of Soret band in heme complexes and in heme-proteins: role of the iron dynamics. Eur. Biophys. J. 23:349-352.
    • (1994) Eur. Biophys. J. , vol.23 , pp. 349-352
    • Leone, M.1    Cupane, A.2    Militello, V.3    Cordone, L.4
  • 20
    • 0022385802 scopus 로고
    • Molecular mechanical calculations on the interaction of ethidium cation with double-helical DNA
    • Lybrand, T., and P. Kollman. 1985. Molecular mechanical calculations on the interaction of ethidium cation with double-helical DNA. Biopolymers. 24:1863-1879.
    • (1985) Biopolymers , vol.24 , pp. 1863-1879
    • Lybrand, T.1    Kollman, P.2
  • 21
    • 33845551513 scopus 로고
    • Picosecond fluorescence anisotropy decay in the ethidium/DNA complex
    • Magde, D., M. Zappala, W. H. Knox, and T. M. Nordlund. 1983. Picosecond fluorescence anisotropy decay in the ethidium/DNA complex. J. Phys. Chem. 87:3286-3288.
    • (1983) J. Phys. Chem. , vol.87 , pp. 3286-3288
    • Magde, D.1    Zappala, M.2    Knox, W.H.3    Nordlund, T.M.4
  • 22
    • 0030004479 scopus 로고    scopus 로고
    • Structural fluctuations of myoglobin from normal modes, Mössbauer-, Raman- and absorption-spectroscopy
    • Melchers, B., E. W. Knapp, F. Parak, L. Cordone, A. Cupane, and M. Leone. 1996. Structural fluctuations of myoglobin from normal modes, Mössbauer-, Raman-and absorption-spectroscopy. Biophys. J. 70: 2092-2099.
    • (1996) Biophys. J. , vol.70 , pp. 2092-2099
    • Melchers, B.1    Knapp, E.W.2    Parak, F.3    Cordone, L.4    Cupane, A.5    Leone, M.6
  • 25
    • 0024503719 scopus 로고
    • Harmonic dynamics of a DNA hexamer in the absence and presence of the intercalator ethidium
    • Rudolph, B. R., and D. A. Case. 1989. Harmonic dynamics of a DNA hexamer in the absence and presence of the intercalator ethidium. Biopolymers. 28:851-871.
    • (1989) Biopolymers , vol.28 , pp. 851-871
    • Rudolph, B.R.1    Case, D.A.2
  • 26
    • 0000777551 scopus 로고
    • Investigations of spectral broadening mechanisms in biomolecules: Cytochrome c
    • Schomacker, K. T., and P. M. Champion. 1986. Investigations of spectral broadening mechanisms in biomolecules: cytochrome c. J. Chem. Phys. 84:5314-5325.
    • (1986) J. Chem. Phys. , vol.84 , pp. 5314-5325
    • Schomacker, K.T.1    Champion, P.M.2
  • 27
    • 0000150198 scopus 로고
    • Investigations of the temperature dependence of resonance Raman cross sections: Applications to heme proteins
    • Schomacker, K. T., and P. M. Champion. 1989. Investigations of the temperature dependence of resonance Raman cross sections: applications to heme proteins. J. Chem. Phys. 90:5982-5993.
    • (1989) J. Chem. Phys. , vol.90 , pp. 5982-5993
    • Schomacker, K.T.1    Champion, P.M.2
  • 29
    • 0017641538 scopus 로고
    • Visualization of drug-nucleic acid interactions at atomic resolution. I. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium: 5-iodouridylyl (3′-5′) adenosine
    • Tsai, C. C., S. C. Jain, and H. M. Sobell. 1977. Visualization of drug-nucleic acid interactions at atomic resolution. I. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium: 5-iodouridylyl (3′-5′) adenosine. J. Mol. Biol. 114:301-315.
    • (1977) J. Mol. Biol. , vol.114 , pp. 301-315
    • Tsai, C.C.1    Jain, S.C.2    Sobell, H.M.3
  • 30
    • 0023566940 scopus 로고
    • Nonspecific interactions in dye binding to DNA. Influence of alcohols and amides
    • Varani, G., L. Della Torre, and G. Baldini. 1987. Nonspecific interactions in dye binding to DNA. Influence of alcohols and amides. Biophys. Chem. 28:175-181.
    • (1987) Biophys. Chem. , vol.28 , pp. 175-181
    • Varani, G.1    Della Torre, L.2    Baldini, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.