Characterization of short tandem repeats from thirty-one human telomeres

Genome Research

Volumn 7, Issue 9, 1997, Pages 917-923

  Rosenberg, Marjorie ^a   Hui, Lester ^b   Ma, Junli ^b   Nusbaum, Harris C ^b   Clark, Kevin ^c   Robinson, Louise ^c   Dziadzio, Laura ^a   Swain, Pamela M ^d   Keith, Tim ^d   Hudson, Thomas J ^b   Biesecker, Leslie G ^a   Flint, Jonathan ^c  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^b WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

^c JOHN RADCLIFFE HOSPITAL   (United Kingdom)

^d GENOME THERAPEUTICS CORPORATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; REPETITIVE DNA;

ANIMAL CELL; ARTICLE; BACTERIOPHAGE P1; CHROMOSOME BANDING PATTERN; COSMID; GENE MAPPING; HUMAN; HUMAN CELL; HYBRID CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; TANDEM REPEAT; TELOMERE;

ANIMALIA;

EID: 0030845875     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.9.917     Document Type: Article

References (37)

1. Bickmore, W.A. and A.T. Sumner. 1989. Mammalian chromosome banding: An expression of genome organization. Trends Genet. 5: 144-148.
2. Blackburn, E.H. and C.W. Greider, eds. 1995. Telomeres. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
3. Blouin, J.L, D.H. Christie, A. Gos, A. Lynn, M.A. Morris, D.H. Ledbetter, A. Chakravarti, and S.E. Antonarakis. 1995. A new dinucleotide repeat polymorphism at the telomere of chromosome 21 q reveals a significant difference between male and female rates of recombination. Am. J. Hum. Genet. 57: 388-394.
4. Brown, W.R.A. 1989. Molecular cloning of human telomeres in yeast. Nature 38: 774-776.
5. Brown, W.R.A., P.J. MacKinnon, A. Villasanté, N. Spurr, V.J. Buckle, and M.J. Dodson. 1990. Structure and polymorphism of human telomere-associated DNA. Cell 63: 119-132.
6. Browne, D.L., E.A. Smith, J. Dietz-Band, H.C. Riethman, T. Phromchotikul, and M. Litt. 1995. Dinucleotide repeat polymorphism at the human lip telomere (D11S2071). Genomics 25: 600-601.
7. Cross, S., J. Lindsey, J. Fantes, S. McKay, N. McGill, and H. Cooke. 1990. The structure of a subterminal repeated sequence present on many human chromosomes. Nucleic Acids Res. 18: 6649-6657.
8. De Lange, T., L. Shiue, R.M. Myers, D.R. Cox, S.L. Naylor, A.M. Killery, and H.E. Varmus. 1990. Structure and variability of human chromosome ends. Mol. Cell. Biol. 10: 518-527.
9. Dib, C., S. Faure, C. Fizames, D. Samson, N. Drouot, A. Vignal, P. Millasseau, S. Marc, J. Hazan, E. Seboun, M. Lathrop, G. Gyapay, J. Morissette, and J. Weissenbach. 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
10. Donis-Keller, H., P. Green, C. Helms, S. Cartinhour, B. Weiffenbach, K. Stephens, T.P. Keith, D.W. Bowden, D.R. Smith, E.S. Lander et al. 1987. A genetic linkage map of the human genome. Cell 51: 319-337.
11. Flint, J., A.O. Wilkie, V.J. Buckle, R.M. Winter, A.J. Holland, and H.E. McDermid. 1995. The detection of subtelomeric chromosomal rearrangements in idiopathic mental retardation. Nature Genet. 9: 132-140.
12. Flint, J., K. Thomas, G. Micklem, H. Raynham, K. Clark, N. Doggett, A. King, and D.R. Higgs. 1997a. The relationship between chromosome structure and function at a human telomeric region. Nature Genet. 15: 252-257.
13. Flint, J., G.P. Bates, K. Clark, A. Dorman, D. Willingham, B.A. Roe, G. Micklem, D.R. Higgs, and E.J. Louis. 1997b. Sequence comparison of human and yeast telomeres identifies structurally distinct subtelomeric domains. Hum. Mol. Genet. 6: 1305-1314.
14. Freije, D., C. Helms, M.S. Watson, and H. Donis-Keller. 1992. Identification of a second pseudoautosomal regions near the Xq and Yq teiomeres. Science 258: 1784-1787.
15. Gyapay, G., J. Morisette, A. Vignal, C. Dib, C. Fizames, P. Millasseau, S. Marc, G. Bernardi, M. Lathrop, and J Weissenbach. 1994. The 1993-94 Genethon human genetic linkage map. Nature Genet. 7: 246-249.
16. Hing, A.V., C. Helms, and H. Donis-Keller. 1993. VNTR and microsatellite polymorphisms within the subtelomeric region of 7q. Am. J. Hum. Gent. 53: 509-517.
17. Holmquist, G.P. 1992. Chromosome bands, their chromatin flavors, and their functional features. Am. J. Hum. Genet. 51: 17-37.
18. Hudson, T.J., L.D. Stein, S.S. Gerety, J. Ma, A.B. Castle, J. Silva, D.K. Slonim, R. Baptista, L. Kruglyak, S.-H. Xu et al. 1995. An STS-based map of the human genome Science 270: 1945-1954.
19. Kipling, D. 1995. The telomere. Oxford University Press Oxford, UK.
20. Ledbetter, D.H. 1992. Minireview: Cryptic translocations and telomere integrity. Am. J. Hum. Genet. 52: 451-456.
21. Macina, R.A., D.G. Negorev, C. Spais, L.A. Ruthig, X.-L. Hu, and H.C. Riethman. 1994. Sequence organization of the human chromosome 2q telomere. Hum. Mol. Genet. 3: 1847-1853.
22. Martin-Gallardo, A., J. Lamerdin, P. Sopapon, C. Friedman, A.L. Fertitta, E. Garcia, A. Carrano, D. Negorev, R.A. Macina, B.J. Trask, and H.C. Riethman. 1995. Molecular analysis of a novel subtelomeric repeat with polymorphic chromosomal distribution. Cytogenet. Cell Genet. 71: 289-295.
23. Murray, J.C., K.H. Buetow, J.L. Weber, S. Sudwigsen, T. Scherpbier-Heddema, F. Manion, J. Quillen, V.C. Sheffield S. Sunden, G.M. Duyk et al. 1994. A comprehensive human linkage map with centimorgan density. Science 265: 2049-2054.
24. Mutirangura, A., F. Greenberg, L.G. Butler, S. Malcolm, R.D. Nicholls, A. Chakravarti, and D.H. Ledbetter. 1993. Multiplex PCR of three dinucleotide repeats in the Prader-Willi/Angelman critical region (15q11-q13): Molecular diagnosis and mechanism of uniparental disomy Hum. Mol. Gene. 2: 143-141.
25. Negorev, D.G., R.A. Macina, C. Spais, L.A. Ruthig, X.-L. Hu, and H.C. Riethman. 1994. Physical analysis of the terminal 270 kb of DNA from human chromosome 1q. Genomics 22: 569-578.
26. NIH/IMM (National Institutes of Health/Institute of Molecular Medicine) Collaboration, Y. Ning, A. Roschke, A.C. Smith, M. Macha, K. Precht, H. Riethman, D. Ledbetter, J. Flint, S. Horsley, R. Regan, K. Kearney et al. 1996. A complete set of human telomeric probes and their clinical application. Nature Genet. 14: 86-89.
27. Ning, Y., M. Rosenberg, L.G. Biesecker, and D.H. Ledbetter. 1996. Isolation of the human chromosome 22q telomere and its application to detection of cryptic chromosomal abnormalities. Hum. Genet. 97: 765-769.
28. Riethman, H.C., R.K. Moyzis, J. Meyne, D.T. Burke, and M.V. Olson. 1989. Cloning human telomeric DNA fragments into Saccharomyces cerevesiae using a yeast artificial chromosome vector. Proc. Natl. Acad. Sci. 86: 6240-6244.
29. Riethman, H.C., C. Spais, J. Buckingham, D. Grady, and R. Moyzis. 1993. Physical analysis of the terminal 240 kb of DNA from chromosome 7q. Genomics 17: 25-32.
30. Riley, J., R. Butler, D. Ogilivie, D. Jenner, S. Powell, R. Anand, J.C. Smith, and A.F. Markham. 1990. A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosomes (YAC) clones. Nucleic Acids Res. 18: 2887-2890.
31. Royle, N.J., M.C. Hill, and A.J. Jeffreys. 1992. Isolation of telomere junction fragments by anchored polymerase chain reaction. Proc. R. Soc. Lond. B Biol. Sci. 247: 57-61.
32. Sonnhammer, E. and R. Durbin. 1994. An expert system for processing sequence homology data. Proc. Int. Soc. Mol. Biol. 94: 363-368.
33. Vocero-Akbani, A., C. Helms, J.-C. Wang, F.J. Sanjurjo, J. Korte-Sarfaty, R.A. Veile, L. Liu, A. Jauch, A.K. Burgess, A.V. Hing et al. 1996. Mapping human telomere regions with YAC and P1 clones: Chromosome-specific markers for 27 telomeres including 149 STSs and 24 polymorphisms for 14 proterminal regions. Genomics 36: 492-506.
34. Wilkie, A.O.M. 1993. Detection of cryptic chromosomal abnormalities in unexplained mental retardation: A general strategy using hypervariable subtelomeric DNA polymorphisms. Am. J. Hum. Genet. 53: 688-701.
35. Wilkie, A.O.M., D.R. Higgs, K.A. Rack, V.J. Buckle, N.K. Spurr, N. Fischel-Ghodsian, I. Ceccherini, W.R.A. Brown, and P.C. Harris. 1991. Stable length polymorphism of up to 260 kb at the tip of the short arm of human chromosome 16. Cell 64: 595-606.
36. Wintle, R.F., T.G. Nygaard, J.-A. Herbrick, K. Kvaloy, and D.W. Cox. 1997. Genetic polymorphism and recombination in the subtelomeric region of chromsome 14q. Genomics 40: 409-414.
37. Youngman, S., G. Bates, S. Williams, A.I. McClatchey, S. Baxendale, Z. Sedlacek, M. Altherr, M.E. MacDonald, J.F. Gusella, D. Sheer, and H. Lehrach. 1992. The telomeric 60 kb of chromosome arm 4p is homologous to telomeric regions on 13p, 15p, 21p and 22p. Genomics 14: 350-356.