Preparation and characterization of a uniformly 2H/15N-labeled RNA oligonucleotide for NMR studies

Nucleic Acids Research

Volumn 25, Issue 7, 1997, Pages 1390-1396

  Nikonowicz, E P ^a   Michnicka, M ^a   Kalurachchi, K ^a   DeJong, E ^a  

^a RICE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDINE; MAGNESIUM ION; OLIGONUCLEOTIDE; PROTON; PURINE NUCLEOTIDE; RIBOSOME PROTEIN; RNA; WATER;

ARTICLE; BINDING SITE; CONTROLLED STUDY; ESCHERICHIA COLI; MAGNETIC FIELD; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; RNA ANALYSIS; RNA STRUCTURE; SIGNAL NOISE RATIO;

BINDING SITES; DEUTERIUM; ESCHERICHIA COLI; MAGNETIC RESONANCE SPECTROSCOPY; MAGNETICS; NUCLEIC ACID CONFORMATION; RIBOSOMAL PROTEINS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S;

ESCHERICHIA COLI;

EID: 0030841705     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.7.1390     Document Type: Article

References (35)

1. Dieckmann, T., Suzuki, E., Nakamura, G.K. and Feigon, J. (1996) RNA, 2, 628-640.
2. Fan, P., Suri, A.K., Fiala, R., Live, D. and Patel, D.J. (1996) J. Mol. Biol., 258, 480-500.
3. Ssll, D., Abelson, J.N. and Schimmel, P.R. (eds) (1980) Transfer RNA: Structure, Properties and Recognition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
4. Heus, H.A. and Pardi, A. (1990) J. Mol. Biol., 216, 1-12.
5. LeMaster, D.M. and Richards, F.M. (1988) Biochemistry, 27, 142-150.
6. Torchia, D.A., Sparks, S.W. and Bax, A. (1988) J. Am. Chem. Soc., 110, 2320-2321.
7. Arrowsmith, C.H., Patcher, R., Altman, R.B., Iyer, S.B. and Jardetsky, O. (1990) Biochemistry, 29, 6332-6341.
8. Venters, R.A., Metzler, W.J., Spicer, L.D., Mueller, L. and Farmer, B.T. (1995) J. Am. Chem. Soc., 117, 9592-9593.
9. Grzesiek, S., Wingfield, P., Stahl, S., Kaufman, J.D. and Bax, A. (1995) J. Am. Chem. Soc. 117, 9594-9595.
10. Agback, P., Maltseva, T.V., Yamakage, S.-I., Nilson, F.P.R., Foldesi, A. and Chattopadhyaya, J. (1994) Nucleic Acids Res., 22, 1404-1412.
11. Tolbert, T.J. and Williamson, J.R. (1996) J. Am. Chem. Soc., 118, 7929-7940.
12. Glemarec, C., Kufel, J., Foldesi, A., Maltseva, T., Sandstrom, A., Kirsebom, L.A. and Chattopadhyaya, J. (1996) Nucleic Acids Res., 24, 2022-2035.
13. Saenger, W. (1984) Principles of Nucleic Acid Structure. Springer-Verlag, New York, NY.
14. Puglisi, J.D., Wyatt, J.R. and Tinoco, I., Jr (1990) J. Mol. Biol., 214, 437-453.
15. Patel, D.J., Shapiro, L. and Hare, D. (1987) Q. Rev. Biophys., 20, 35-112.
16. Nonin, S., Leroy, J.-L. and Gueron, M. (1996) Nucleic Acids Res., 24, 586-595.
17. Davanloo, P., Rosenburg, A.H., Dunn, J.J. and Studier, F.W. (1984) Proc. Natl. Acad. Sci. USA, 81, 2035-2039.
18. Heus, H.A. and Pardi, A. (1991) J. Mol. Biol., 217, 113-124.
19. Nikonowicz, E.P., Sirr, A., Legault, P., Jucker, F.M., Baer, L.M. and Pardi, A. (1992) Nucleic Acids Res., 20, 4507-4513.
20. Shaka, A.J., Barker, P.B. and Freeman, R. (1985) J. Magn. Resonance, 64, 547-552.
21. Messerle, B.A., Wider, G., Otting, G., Weber, C. and Wuthrich, K. (1989) J. Magn. Resonance, 85, 608-613.
22. Hore, P.J. (1983) J. Magn. Resonance, 55, 283-300.
23. Peng, J.W. and Wagner, G. (1992) J. Magn. Resonance, 98, 308.
24. Otting, G. and Wuthrich, K. (1990) Q. Rev. Biophys., 23, 39-96.
25. Markus, K.A., Dayie, K.T., Matsudaira, P. and Wagner, G. (1994) J. Magn. Resonance Ser. B, 105, 192-195.
26. Batey, R.T., Inada, M., Kujawinski, E., Puglisi, J.D. and Williamson, J.R. (1992) Nucleic Acids Res., 20, 4515-4523.
27. Hoffman, D.W. and Holland, J.A. (1995) Nucleic Acids Res., 23, 3361-3362.
28. Wimberly, B., Varani, G. and Tinoco, I., Jr (1993) Biochemists, 32, 1078-1087.
29. Puglisi, J.D., Tan, R., Calnan, B.J., Frankel, A.D. and Williamson, J.R. (1992) Science, 257, 76-80.
30. Holland, J.A. and Hoffman, D.W. (1996) Nucleic Acids Res., 24, 2841-2848.
31. Gutell, R.R. (1993) Nucleic Acids Res., 21, 3051-3054.
32. Mougel, M., Allmang, C., Eyermann, F., Cachia, C., Ehresmann, B. and Ehresmann, C. (1993) Eur. J. Biochem., 215, 787-792.
33. Kalurachchi, K., Uma, K., Zimmermann, R.L. and Nikonowicz, E.P. (1997) Proc. Natl. Acad. Sci. USA, 94, in press.
34. Mueller, L., Legault, P. and Pardi, A. (1995) J. Am. Chem., Soc., 117, 11043-11048.
35. Gregory, R.J., Cahill, P.B.F., Thurlow, D.L. and Zimmermann, R.A. (1988) J. Mol. Biol., 204, 295-307.