메뉴 건너뛰기




Volumn 16, Issue 14, 1997, Pages 4456-4466

Why is the initiation nick site of an AT-rich rolling circle plasmid at the tip of a GC-rich cruciform?

Author keywords

Cruciform; Initiation nicking site; Recycling; RepC; Rolling circle

Indexed keywords

CRUCIFORM DNA; OLIGONUCLEOTIDE; PLASMID DNA; PROTEIN SUBUNIT; SINGLE STRANDED DNA; TRANSCRIPTION FACTOR;

EID: 0030837968     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/16.14.4456     Document Type: Article
Times cited : (39)

References (33)
  • 1
    • 0023645748 scopus 로고
    • Mutational analysis of the bacteriophage phi X174 replication origin
    • Baas, P.D. (1987) Mutational analysis of the bacteriophage phi X174 replication origin. J. Mol. Biol., 198, 51-61.
    • (1987) J. Mol. Biol. , vol.198 , pp. 51-61
    • Baas, P.D.1
  • 2
    • 0027197409 scopus 로고
    • Measurement of gene expression by translational coupling: Effect of copy mutations on pT181 initiator synthesis
    • Bargonetti, J., Wang, P.Z. and Novick, R.P. (1993) Measurement of gene expression by translational coupling: effect of copy mutations on pT181 initiator synthesis. EMBO J., 12, 3659-3667.
    • (1993) EMBO J. , vol.12 , pp. 3659-3667
    • Bargonetti, J.1    Wang, P.Z.2    Novick, R.P.3
  • 4
    • 0020444228 scopus 로고
    • Replication origin of bacteriophage f1; two signals required for its function
    • Dotto, G.P., Horiuchi, K., Jakes, K.S. and Zinder, N.D. (1982) Replication origin of bacteriophage f1; two signals required for its function. J. Mol. Biol., 162, 335-343.
    • (1982) J. Mol. Biol. , vol.162 , pp. 335-343
    • Dotto, G.P.1    Horiuchi, K.2    Jakes, K.S.3    Zinder, N.D.4
  • 5
    • 0024334198 scopus 로고
    • The family of highly interrelated single-stranded deoxyribonucleic acid plasmids
    • Gruss, A.D. and Ehrlich, S.D. (1989) The family of highly interrelated single-stranded deoxyribonucleic acid plasmids. Microbiol. Rev., 53, 231-241.
    • (1989) Microbiol. Rev. , vol.53 , pp. 231-241
    • Gruss, A.D.1    Ehrlich, S.D.2
  • 6
    • 0027436394 scopus 로고
    • The mechanism of sequence-specific DNA cleavage and strand transfer by φX174 gene A* protein
    • Hanai, R. and Wang, J.C. (1994) The mechanism of sequence-specific DNA cleavage and strand transfer by φX174 gene A* protein. J. Biol. Chem., 268, 23830-23836.
    • (1994) J. Biol. Chem. , vol.268 , pp. 23830-23836
    • Hanai, R.1    Wang, J.C.2
  • 7
    • 0028364238 scopus 로고
    • Multiple DNA conformational changes induced by an initiator protein precede the nicking reaction in a rolling circle replication origin
    • Higashitani, A., Greenstein, D., Hirokawa, H., Asano, S. and Horiuchi, K. (1994) Multiple DNA conformational changes induced by an initiator protein precede the nicking reaction in a rolling circle replication origin. J. Mol. Biol. 237, 388-400.
    • (1994) J. Mol. Biol. , vol.237 , pp. 388-400
    • Higashitani, A.1    Greenstein, D.2    Hirokawa, H.3    Asano, S.4    Horiuchi, K.5
  • 8
    • 0024679514 scopus 로고
    • Specificity of the interactions between the Rep proteins and the origins of replication of Staphylococcus aureus plasmids pT181 and pC221
    • Iordanescu, S. (1989) Specificity of the interactions between the Rep proteins and the origins of replication of Staphylococcus aureus plasmids pT181 and pC221. Mol. Gen. Genet., 217, 481-487.
    • (1989) Mol. Gen. Genet. , vol.217 , pp. 481-487
    • Iordanescu, S.1
  • 9
    • 0025935210 scopus 로고
    • The Staphylococcus aureus mutation pcrA3 leads to the accumulation of pT181 replication initiation complexes
    • Iordanescu, S. (1991) The Staphylococcus aureus mutation pcrA3 leads to the accumulation of pT181 replication initiation complexes. J. Mol. Biol., 221, 1183-1189.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1183-1189
    • Iordanescu, S.1
  • 10
    • 0027507727 scopus 로고
    • Characterization of the Staphylococcus aureus chromosomal gene pcrA, identified by mutations affecting plasmid pT181 replication
    • Iordanescu, S. (1993) Characterization of the Staphylococcus aureus chromosomal gene pcrA, identified by mutations affecting plasmid pT181 replication. Mol. Gen. Genet., 241, 185-192.
    • (1993) Mol. Gen. Genet. , vol.241 , pp. 185-192
    • Iordanescu, S.1
  • 11
    • 0029030967 scopus 로고
    • Plasmid pT181 replication is decreased at high levels of RepC per plasmid copy
    • Iordanescu, S. (1995) Plasmid pT181 replication is decreased at high levels of RepC per plasmid copy. Mol. Microbiol., 16, 477-484.
    • (1995) Mol. Microbiol. , vol.16 , pp. 477-484
    • Iordanescu, S.1
  • 12
    • 0024720526 scopus 로고
    • Staphylococcus aureus chromosomal mutations that decrease efficiency of Rep utilization in replication of pT181 and related plasmids
    • Iordanescu, S. and Bargonetti, J. (1989) Staphylococcus aureus chromosomal mutations that decrease efficiency of Rep utilization in replication of pT181 and related plasmids. J. Bacteriol., 171, 4501-4503.
    • (1989) J. Bacteriol. , vol.171 , pp. 4501-4503
    • Iordanescu, S.1    Bargonetti, J.2
  • 13
    • 0029857239 scopus 로고    scopus 로고
    • The inactive pT181 initiator heterodimer, RepC/C*, binds but fails to induce melting of the plasmid replication origin
    • Jin, R., Zhou, X. and Novick, R. (1996) The inactive pT181 initiator heterodimer, RepC/C*, binds but fails to induce melting of the plasmid replication origin. J. Biol. Chem., 271, 31086-31091.
    • (1996) J. Biol. Chem. , vol.271 , pp. 31086-31091
    • Jin, R.1    Zhou, X.2    Novick, R.3
  • 14
    • 0031036215 scopus 로고    scopus 로고
    • In vitro inhibitory activity of RepC/C*, the inactivated form of the pT181 plasmid initiation protein, RepC/C
    • Jin, R., Rasooly, A. and Novick, R.P. (1997) In vitro inhibitory activity of RepC/C*, the inactivated form of the pT181 plasmid initiation protein, RepC/C. J. Bacteriol., 179, 141-147.
    • (1997) J. Bacteriol. , vol.179 , pp. 141-147
    • Jin, R.1    Rasooly, A.2    Novick, R.P.3
  • 15
    • 0019851023 scopus 로고
    • Replication of plasmid pT181 in vitro: Requirement for a plasmid-encoded product
    • Khan, S.A., Carleton, S.M. and Novick, R.P. (1981) Replication of plasmid pT181 in vitro: requirement for a plasmid-encoded product. Proc. Natl Acad. Sci. USA, 78, 4902-4906.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 4902-4906
    • Khan, S.A.1    Carleton, S.M.2    Novick, R.P.3
  • 16
    • 0023665611 scopus 로고
    • Cleavage of single-stranded DNA by plasmid pT181-encoded RepC protein
    • Koepsel, R.R. and Khan, S.A. (1987) Cleavage of single-stranded DNA by plasmid pT181-encoded RepC protein. Nucleic Acids Res., 15, 4085-4097.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 4085-4097
    • Koepsel, R.R.1    Khan, S.A.2
  • 17
    • 0022340318 scopus 로고
    • The replication initiator protein of plasmid pT181 has sequence-specific endonuclease and topoisomerase-like activities
    • Koepsel, R.R., Murray, R.W., Rosenblum, W.D. and Khan, S.A. (1985) The replication initiator protein of plasmid pT181 has sequence-specific endonuclease and topoisomerase-like activities. Proc. Natl Acad. Sci. USA, 82, 6845-6849.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 6845-6849
    • Koepsel, R.R.1    Murray, R.W.2    Rosenblum, W.D.3    Khan, S.A.4
  • 18
    • 0345483323 scopus 로고
    • Sequence-specific interaction between the replication initiator protein of plasmid pT181 and its origin of replication
    • Koepsel, R.R., Murray, R.W. and Khan, S.A. (1986) Sequence-specific interaction between the replication initiator protein of plasmid pT181 and its origin of replication. Proc. Natl Acad. Sci. USA, 83, 5484-5488.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 5484-5488
    • Koepsel, R.R.1    Murray, R.W.2    Khan, S.A.3
  • 19
    • 0022423202 scopus 로고
    • The kinetic properties of cruciform extrusion are determined by DNA base-sequence
    • Lilley, D.M.J. (1985) The kinetic properties of cruciform extrusion are determined by DNA base-sequence. Nucleic Acids Res., 13, 1443-1465.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 1443-1465
    • Lilley, D.M.J.1
  • 20
    • 0021771017 scopus 로고
    • Thermodynamics of the ColE1 cruciform. Comparisons between probing and topological experiments using single topoisomers
    • Lilley, D.M.J. and Hallam, L.R. (1984) Thermodynamics of the ColE1 cruciform. Comparisons between probing and topological experiments using single topoisomers. J. Mol. Biol., 180, 179-200.
    • (1984) J. Mol. Biol. , vol.180 , pp. 179-200
    • Lilley, D.M.J.1    Hallam, L.R.2
  • 21
    • 0028899629 scopus 로고
    • Specific nicking-closing activity of the initiator of replication protein RepB of plasmid pMV158 on supercoiled or single-stranded DNA
    • Moscoso, M., del Solar, G. and Espinosa, M. (1995) Specific nicking-closing activity of the initiator of replication protein RepB of plasmid pMV158 on supercoiled or single-stranded DNA. J. Biol. Chem., 270, 3772-3779.
    • (1995) J. Biol. Chem. , vol.270 , pp. 3772-3779
    • Moscoso, M.1    Del Solar, G.2    Espinosa, M.3
  • 22
    • 0025175921 scopus 로고
    • Initiation of rolling circle replication of pT181 plasmid: Initiator protein enhances cruciform extrusion at the origin
    • Noirot, P., Bargonetti, J. and Novick, R.P. (1990) Initiation of rolling circle replication of pT181 plasmid: initiator protein enhances cruciform extrusion at the origin. Proc. Natl Acad. Sci. USA, 87, 8560-8564.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 8560-8564
    • Noirot, P.1    Bargonetti, J.2    Novick, R.P.3
  • 23
    • 0024458028 scopus 로고
    • Staphylococcal plasmids and their replication
    • Novick, R.P. (1989) Staphylococcal plasmids and their replication. Annu. Rev. Microbiol., 43, 537-565.
    • (1989) Annu. Rev. Microbiol. , vol.43 , pp. 537-565
    • Novick, R.P.1
  • 24
    • 0015518564 scopus 로고
    • Studies on plasmid replication: Plasmid incompatibility and establishment in Staphylococcus aureus
    • Novick, R.P. and Brodsky, R.J. (1972) Studies on plasmid replication: plasmid incompatibility and establishment in Staphylococcus aureus. J. Mol. Biol. 68, 285-302.
    • (1972) J. Mol. Biol. , vol.68 , pp. 285-302
    • Novick, R.P.1    Brodsky, R.J.2
  • 25
    • 0027180031 scopus 로고
    • Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule
    • Novick, R.P., Ross, H.F. Projan, S.J., Kornblum, J., Kreiswirth, B. and Moghazeh, S. (1993) Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule. EMBO J., 12, 3967-3975.
    • (1993) EMBO J. , vol.12 , pp. 3967-3975
    • Novick, R.P.1    Ross, H.F.2    Projan, S.J.3    Kornblum, J.4    Kreiswirth, B.5    Moghazeh, S.6
  • 26
    • 0027146636 scopus 로고
    • Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: Analogy to bacterial conjugation
    • Pansegrau, W., Schoumacher, F., Hohn, B. and Lanka, E. (1993) Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation. Proc. Natl Acad. Sci. USA, 90, 11538-11542.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 11538-11542
    • Pansegrau, W.1    Schoumacher, F.2    Hohn, B.3    Lanka, E.4
  • 27
    • 0018824063 scopus 로고
    • Supercoils in prokaryotic DNA restrained in vivo
    • Pettijohn, D.E. and Pfenninger, O. (1980) Supercoils in prokaryotic DNA restrained in vivo. Proc. Natl Acad. Sci. USA, 77, 1331-1335.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 1331-1335
    • Pettijohn, D.E.1    Pfenninger, O.2
  • 28
    • 0027717127 scopus 로고
    • Replication-specific inactivation of the pT181 plasmid initiator protein
    • Rasooly, A. and Novick, R.P. (1993) Replication-specific inactivation of the pT181 plasmid initiator protein. Science, 262, 1048-1050.
    • (1993) Science , vol.262 , pp. 1048-1050
    • Rasooly, A.1    Novick, R.P.2
  • 29
    • 0028221881 scopus 로고
    • Plasmids of the pT181 family show replication-specific initiator protein modification
    • Rasooly, A., Projan, S.J. and Novick, R.P. (1994a) Plasmids of the pT181 family show replication-specific initiator protein modification. J. Bacteriol., 176, 2450-2453.
    • (1994) J. Bacteriol. , vol.176 , pp. 2450-2453
    • Rasooly, A.1    Projan, S.J.2    Novick, R.P.3
  • 30
    • 0027946914 scopus 로고
    • Replication-specific conversion of the Staphylococcus aureus pT181 initiator protein from an active homodimer to an inactive heterodimer
    • Rasooly, A., Wang, P.-Z. and Novick, R. (1994b) Replication-specific conversion of the Staphylococcus aureus pT181 initiator protein from an active homodimer to an inactive heterodimer. EMBO J., 13, 5245-5251.
    • (1994) EMBO J. , vol.13 , pp. 5245-5251
    • Rasooly, A.1    Wang, P.-Z.2    Novick, R.3
  • 31
    • 0020693235 scopus 로고
    • Studies on the phi X174 gene a protein-mediated termination of leading strand DNA synthesis
    • Reinberg, D., Zipursky, S.L., Weisbeek, P., Brown, D. and Hurwitz, J. (1983) Studies on the phi X174 gene A protein-mediated termination of leading strand DNA synthesis. J. Biol. Chem., 258, 529-537.
    • (1983) J. Biol. Chem. , vol.258 , pp. 529-537
    • Reinberg, D.1    Zipursky, S.L.2    Weisbeek, P.3    Brown, D.4    Hurwitz, J.5
  • 32
    • 0029134518 scopus 로고
    • RepD/D*: A protein-DNA adduct arising during plasmid replication
    • Thomas, C.D. and Jennings, L.J. (1995) RepD/D*: a protein-DNA adduct arising during plasmid replication. Biochem. Soc. Trans., 23, 4425.
    • (1995) Biochem. Soc. Trans. , vol.23 , pp. 4425
    • Thomas, C.D.1    Jennings, L.J.2
  • 33
    • 0026547110 scopus 로고
    • Specificity of origin recognition by replication initiator protein in plasmids of the pT181 family is determined by a six amino acid residue element
    • Wang, P.-Z., Projan, S.J., Henriquez, V. and Novick, R.P. (1992) Specificity of origin recognition by replication initiator protein in plasmids of the pT181 family is determined by a six amino acid residue element. J. Mol. Biol., 223, 145-158.
    • (1992) J. Mol. Biol. , vol.223 , pp. 145-158
    • Wang, P.-Z.1    Projan, S.J.2    Henriquez, V.3    Novick, R.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.