Mechanistic roles of tyrosine 149 and serine 124 in UDP-galactose 4- epimerase from Escherichia coli

Biochemistry

Volumn 36, Issue 35, 1997, Pages 10675-10684

  Liu, Yijeng ^a   Thoden, James B ^a   Kim, Jeongmin ^a   Berger, Elizabeth ^a   Gulick, Andrew M ^a   Ruzicka, Frank J ^a   Holden, Hazel M ^a   Frey, Perry A ^a  

^a UNIVERSITY OF WISCONSIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

URIDINE DIPHOSPHATE GLUCOSE 4 EPIMERASE;

ACID BASE BALANCE; ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; ENZYME ACTIVITY; ENZYME PHOSPHORYLATION; ESCHERICHIA COLI; GENE CASSETTE; GENE EXPRESSION; GENETIC ANALYSIS; HYDROGEN BOND; PRIORITY JOURNAL; PROTON TRANSPORT; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; ENZYME ACTIVATION; ESCHERICHIA COLI; GENES, BACTERIAL; GENES, SYNTHETIC; KINETICS; MUTAGENESIS, INSERTIONAL; PROTEIN CONFORMATION; PROTEIN ENGINEERING; SERINE; TYROSINE; UDPGLUCOSE 4-EPIMERASE;

ESCHERICHIA; ESCHERICHIA COLI; FELIS CATUS; KOBUS;

EID: 0030832007     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi970430a     Document Type: Article

References (46)

1. Persson, B., Krook, M., and Jörnvall, H. (1995) in Enzymology and Molecular Biology of Carbonyl Metabolism 5 (Weiner, H., et al., Eds.) pp 383-395, Plenum Press, New York.
2. Baker, M. E., and Blasco, R. (1992) FEBS Lett. 301, 89-93.
3. Holm, L., Sander, C., and Murzin, A. (1994) Struct. Biol. 1, 146-147.
4. Thoden, J. B., Frey, P. A., and Holden, H. M. (1996) Biochemistry 35, 2557-2566.
5. Thoden, J. B., Frey, P. A., and Holden, H. M. (1996) Biochemistry 35, 5137-5144.
6. Thoden, J. B., Frey, P. A., and Holden, H. M. (1996) Protein Sci. 5, 2149-2161.
7. Varughese, K. I., Skinner, M. M., Whiteley, J. M., Matthews, D., and Xuong, N. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 6080-6084.
8. Varughese, K. I., Xuong, N. H., Kiefer, P. M., Matthews, D. A., and Whiteley, J. M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 5582-5586.
9. Tanaka, N., Nonaka, T., Yoshimoto, T., Tsuru, D., and Mitsui, Y. (1996a) Biochemistry 35, 7715-7730.
10. Tanaka, N., Nonaka, T., Nakanishi, M., Deyashiki, Y., Hara, A., and Mitsui, Y. (1996b) Structure 4, 33-45.
11. Ghosh, D., Weeks, C. M., Grochulski, P., Duax, W. L., Erman, M., Rimsay, R. I., and Orr, J. C. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 10064-10068.
12. Ghosh, D., Wawrzak, Z., Weeks, C. M., Duax, W. L., and Erman, M. (1994) Structure 2, 629-640.
13. Ghosh, D., Pletnev, V. A., Zhu, D. W., Wawrzak, Z., Duax, W. E., Pangborn, W., Labrie, F., and Lin, S. X. (1995) Structure 3, 503-513.
14. Azzi, A., Rehse, R. H., Zhu, D.-W., Campbell, R. E., Labrie, F., and Lin, S.-X. (1996) Nat. Struct. Biol. 3, 665-668.
15. Frey, P. A. (1987) in Pyridine Nucleotide Coenzymes: Chemical, Biochemical, and Medical Aspects (Dolphin, D., Poulson, R., and Avramovic, O., Eds.) pp 461-511, John Wiley & Sons, Inc., New York.
16. Thoden, J. B., Hegeman, A. D., Wesenberg, G., Chapeau, M. C., Frey, P. A., and Holden, H. M. (1997) Biochemistry 36, 6294-6304.
17. Swanson, B. A., and Frey, P. A. (1993) Biochemistry 32, 13231-13236.
18. Vanhooke, J. L., and Frey, P. A. (1994) J. Biol. Chem. 269, 31496-31504.
19. Liu, Y., Vanhooke, J. E., and Frey, P. A. (1996) Biochemistry 35, 7615-7620.
20. Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982) Molecular Cloning, Cold Spring Harbor Laboratory Press, Plainview, NY.
21. Hattori, M., and Sakaki, R. Y. (1986) Anal. Biochem. 152, 232-238.
22. Sinha, N. D., Beirnat, J., McManus, J., and Koester, H. (1984) Nucleic Acids Res. 12, 4539-4557.
23. Smith, H. O. (1980) Methods Enzymol. 65, 371-380.
24. Richardson, C. C. (1971) in Procedures in Nucleic Acids Research (Canton, G. L., and Davies, D. R., Eds.) Vol. 2, pp 815-828, Harper and Row, New York.
25. Burns, D. M., and Beacham, I. R. (1983) Anal. Biochem. 135, 48-51.
26. Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R. Hori, G. T., Mullis, K. B., and Erlich, H. A. (1988) Science 239, 487-491.
27. Majumdar, A., and Adhya, S. (1987) J. Biol. Chem. 262, 13258-13262.
28. Thoden, J. B., Gulick, A. M., and Holden, H. M. (1997) Biochemistry 36, 10685-10695.
29. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Nolan, C., Ed.) 2nd ed., Vol. 3, p A.3.
30. Tronrud, D. E., Ten Eyck, L. F., and Matthews, B. W. (1987) Acta Crystallogr. A 43, 489-501.
31. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154, 367-382.
32. Davis, J. E., Nolan, L. D., and Frey, P. A. (1974) Biochim. Biophys. Acta 334, 442-447.
33. Kalckar, H. M., Bertland, A. U., and Bugge, B. (1970) Proc. Natl. Acad. Sci U.S.A. 65, 1113-1119.
34. Ketley, J. N., and Schellenberg, K. A. (1973) Biochemistry 12, 315-320.
35. Kang, U. G., Nolan, L. D., and Frey, P. A. (1975) J. Biol. Chem. 250, 7099-7105.
36. Konopka, J. M., Halkides, C. J., Vanhooke, J. L., Gorenstein, D. G., and Frey, P. A. (1989) Biochemistry 28, 2645-2654.
37. Rizzo, V., Pande, A., and Luisi, P. L. (1987) in Pyridine Nucleotide Coenzymes (Dolphin, D., Poulson. R., and Avramovic, O., Eds.) Vol. IIA, pp 99-161, Wiley and Sons, New York.
38. Flentke, G. R. (1988) Ph.D. Dissertation, University of Wisconsin-Madison, Madison, WI.
39. Wong, Y.-H., and Frey, P. A. (1979) Biochemistry 18, 5337-5341.
40. Flentke, G. R., and Frey, P. A. (1990) Biochemistry 29, 2430-2436.
41. Arabshahi, A., Flentke, G. R., and Frey, P. A. (1988) J. Biol. Chem. 263, 2638-2643.
42. Wong, S. S., and Frey, P. A. (1977) Biochemistry 16, 298-305.
43. Burke, J. R., and Frey, P. A. (1993) Biochemistry 32, 13220-13230.
44. Ensor, C. M., and Tai, H. H. (1994) Biochim. Biophys. Acta 1208, 151-156.
45. Obeid, J., and White, P. C. (1992) Biochem. Biophys. Res. Commun. 188, 222-227.
46. Ensor, C. M., and Tai, H. H. (1996) Biochem. Biophys. Res. Commun. 220, 330-333.