Bottleneck effect on evolutionary rate in the nearly neutral mutation model

Genetics

Volumn 147, Issue 2, 1997, Pages 907-914

  Araki, Hitoshi ^a   Tachida, Hidenori ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EVOLUTION; GENE LOCUS; GENE MUTATION; POPULATION GENETICS; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

EVOLUTION; MODELS, GENETIC; MUTATION; POLYMORPHISM, GENETIC;

EID: 0030827970     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. BALLARD, J. W. O., and M. KREITMAN, 1994 Unraveling selection in the mitochodrial genome of Drosophila. Genetics 138: 757-772.
2. BULMER, M., 1989 Estimating the variability of substitution rates. Genetics 123: 615-619.
3. EASTEAL, S., and C. COLLET, 1994 Consistent variation in amino-acid substitution rate, despite uniformity of mutation rate: protein evolution in mammals is not neutral. Mol. Biol. Evol. 11: 643-647.
4. GATES, D. M., 1993 Climate Change and Its Biological Consequences. Sinauer Associates, Sunderland, MA.
5. GILLESPIE, J. H., 1989 Lineage effects and the index of dispersion of molecular evolution. Mol. Biol. Evol. 6: 636-647.
6. GILLESPIE, J. H., 1991 The Causes of Molecular Evolution Oxford University Press, New York.
7. GILLESPIE, J. H., 1994 Substitution processes in molecular evolution. III. deleterious alleles. Genetics 138: 943-952.
8. GILLESPIE, J. H., 1995 On Ohta's hypothesis: most amino acid substitutions are deleterious. J. Mol. Evol. 40: 64-69.
9. GOLDMAN, N., 1994 Variance to mean ratio, R( t), for Poisson processes on phylogenetic trees. Mol. Phylogenet. Evol. 3: 230-239.
10. IWASA, Y., 1993 Overdispersed molecular evolution in constant environments. J. Theoret. Biol. 164: 373-393.
11. KIMURA, K., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
12. KIMURA, M., 1968 Evolutionary rate at the molecular level. Nature 217: 624-626.
13. KIMURA, M., 1983 The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.
14. KIMURA, M., and J. F. CROW, 1964 The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
15. KINGMAN, J. F. C., 1978 A simple model for the balance between selection and mutation. J. Appl. Probab. 15: 1-12.
16. LANGLEY, C. H., and C. H. FITCH, 1974 An estimation of the constancy of the rate of molecular evolution. J. Mol. Evol. 3: 161-177.
17. LEWONTIN, R. C., 1974 The Genetic Basis of Evolutionary Change. Columbia University Press, New York.
18. LI, W-H., M. TANIRMURA and P. M. SHARP, 1987 An evaluation of the molecular clock hypothesis using mammalian DNA sequences. J. Mol. Evol. 25: 330-342.
19. MUKAI, T., and C. C. COCKERHAM, 1977 Spontaneous mutation rates at enzyme loci in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 74: 2514-2517.
20. NACHMAN, M. W., W. M. BROWN, M. STONEKING and C. F. AQUADRO, 1996 Nonneutral mitochondrial DNA variation in humans and chimpanzees. Genetics 142: 953-963.
21. NEEL, J. V., C. SATOH, K. GORIKI, M. FUJITA, N. TAKAHASHI et al, 1986 The rate with which spontaneous mutation alters the electrophoretic mobility of polypeptides. Proc. Natl. Acad. Sci. USA 83: 389-393.
22. OHTA, T., 1972 Population size and rate of evolution. J. Mol. Evol. 1: 305-314.
23. OHTA, T., 1973 Slightly deleterious mutant substitutions in evolution. Nature 246: 96-98.
24. OHTA, T., 1977 Extension to the neutral mutation random drift hypothesis, pp. 148-167 in Molecular Evolution and Polymorphism, edited by M. KIMURA. National Institute of Genetics, Mishima, Japan.
25. OHTA, T., 1992 The nearly neutral theory of molecular evolution. Annu. Rev. Syst. Ecol. 23: 263-286.
26. OHTA, T., 1993a Amino acid substitution at the Adh locus of Drosophila is facilitated by small population size. Proc. Natl. Acad. Sci. USA 90: 4548-4551.
27. OHTA, T., 1993b An examination of the generation-time effect on molecular evolution. Proc. Natl. Acad. Sci. USA 90: 10676-10680.
28. OHTA, T., 1995 Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory. J. Mol. Evol. 40: 56-63.
29. OHTA, T., and M. KIMURA, 1971 On the constancy of the evolutionary rate of cistrons. J. Mol. Evol. 1: 18-25.
30. OHTA, T., and H. TACHIDA, 1990 Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution. Genetics 126: 219-229.
31. TACHIDA, H., 1991 A study on a nearly neutral mutation model in finite populations. Genetics 128: 183-192.
32. TACHIDA, H., 1996 Effects of the shape of distribution of mutant effect in nearly neutral mutation models. J. Genet. 75: 33-48.
33. TAKAHATA, N., 1987 On the overdispersed molecular clock. Genetics 116: 169-179.
34. TAKAHATA, N., 1991 Statistical models of the overdispersed molecular clock. Theoret. Popul. Biol. 39: 329-344.
35. WEIR, B. S., 1990 Genetic Data Analysis. Sinauer, Sunderland, MA.