Role of macromolecular hydration in the binding of the Escherichia coli cyclic AMP receptor to DNA

Biochemistry

Volumn 36, Issue 39, 1997, Pages 11640-11647

  Vossen, Karen M ^a   Wolz, Russell ^a,b   Daugherty, Margaret A ^a   Fried, Michael G ^a  

^a PENN STATE COLLEGE OF MEDICINE   (United States)

^b Commonwealth Biotechnology Corp ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP RECEPTOR; DNA;

ARTICLE; DNA BINDING; DNA DETERMINATION; ESCHERICHIA COLI; HYDRATION; NONHUMAN; OSMOTIC STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; RECEPTOR BINDING; STOICHIOMETRY;

DNA, BACTERIAL; ESCHERICHIA COLI; MODELS, MOLECULAR; OSMOLAR CONCENTRATION; PROTEIN BINDING; RECEPTORS, CYCLIC AMP; SOLUTIONS; SURFACE PROPERTIES; WATER;

ESCHERICHIA COLI;

EID: 0030819362     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi971193e     Document Type: Article

References (62)

1. Aiba, H., Fugimoto, S., & Ozaki, N. (1982) Nucleic Acids Res. 10, 1345-1361.
2. Anderson, W. B., Schneider, A. B., Emmer, M., Perlman, R. L., & Pastan, I. (1971) J. Biol. Chem. 246, 5929-5937.
3. Angulo, J., & Krakow, J. S. (1986) J. Biol. Chem. 261, 11315-11319.
4. Arakawa, T., & Timasheff, S. N. (1985) Biophys. J. 47, 411-414.
5. Barkley, M., Lewis, P., & Sullivan, G. (1981) Biochemistry 20, 3842-3851.
6. Broderson, R., Nielsen, F., Christiansen, J., & Andersen, K. (1987) Eur. J. Biochem. 169, 487-495.
7. Carey, J. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 975-979.
8. Carey, J. (1989) J. Biol. Chem. 264, 1941-1945.
9. Casassa, E. F., & Eisenberg, H. (1964) Adv. Protein Chem. 19, 287-395.
10. Cayley, S., Lewis, B., Guttman, H., & Record, M. T. (1991) J. Mol. Biol. 222, 281-300.
11. Cohn, E. J., & Edsall, J. T. (1943) Proteins, Amino Acids and Peptides as Ions and Dipolar Ions, pp 140-154, Reinhold Publishing Co., New York, NY.
12. Colombo, M. F., Rao, D. C., & Parsegian, V. A. (1992) Science 256, 655-659.
13. Connolly, M. L. (1983) J. Appl. Crystallogr. 16, 548-558.
14. Dinnbier, U., Limpinsel, E., Schmid, R., & Bakker, E. P. (1988) Arch. Microbiol. 150, 348-357.
15. Ebright, R. H. (1993) Mol. Microbiol. 8, 797-802.
16. Epstein, W., & Schultz, S. G. (1965) J. Gen. Physiol. 49, 221-234.
17. Fried, M. (1982) Dissertation, Yale University, New Haven, CT.
18. Fried, M. G. (1989) Electrophoresis 10, 366-376.
19. Fried, M. G., & Crothers, D. M. (1981) Nucleic Acids Res. 9, 6505-6525.
20. Fried, M. G., & Bloomfield, V. A. (1984) Biopolymers 23, 2141-2155.
21. Fried, M. G., & Crothers, D. M. (1984) J. Mol. Biol. 172, 241-262.
22. Fried, M. G., & Stickle, D. F. (1993) Eur. J. Biochem. 218, 469-475.
23. Fried M. G., & Liu, G. (1994) Nucleic Acids Res. 22, 5054-5059.
24. Garner, M. M., & Revzin, A. (1981) Nucleic Acids Res. 9, 3047-3060.
25. Garner, M. M., & Rau, D. C. (1995) EMBO J. 14, 1257-1263.
26. Ha, J., Spolar, R. S., & Record, M. T., Jr. (1989) J. Mol. Biol. 209, 801-816.
27. Ha J.-H., Capp M. W., Hohenwalter, M. D., Baskerville, M., & Record, M. T., Jr. (1992) J. Mol. Biol. 228, 252-264.
28. Hudson, J. M., & Fried, M. G. (1990) J. Mol. Biol. 214, 381-396.
29. Hudson, J. M., & Fried, M. G. (1991) J. Bacteriol. 173, 59-66.
30. Hudson, J. M., Crowe, L. G., & Fried, M. G. (1990) J. Biol. Chem. 265, 3219-3225.
31. Kolb, A., Busby, S., Buc, H., Garges, S., & Adhya, S. (1993) Annu. Rev. Biochem. 62, 749-796.
32. Larsen, P. I., Sydnes, L. K., Landfald, B., & Strom, A. R. (1987) Arch. Micobiol. 147, 1-7.
33. Leirmo, S., Harrison, C., Cayley, D. S., Burgess, R. R., & Record, M. T. (1987) Biochemistry 26, 2095-2101.
34. Liu-Johnson, H. N., Gartenberg, M. R., & Crothers, D. M. (1986) Cell 47, 995-1005.
35. Majors, J. E. (1977) Dissertation, Harvard University, Cambridge, MA.
36. Measures, J. C. (1975) Nature 257, 398-400.
37. Meury, J., Robin, A., & Monnier-Champiex, P. (1985) Eur. J. Biochem. 151, 613-619.
38. Overman, L. B., & Lohman, T. M. (1994) J. Mol. Biol. 236, 165-178.
39. Parsegian, V. A., Rand, R. P., Fuller, N. L., & Rau, D. C. (1986) Methods Enzymol. 127, 400-416.
40. Parsegian, V. A., Rand, R. P., & Rau, D. C. (1995) Methods Enzymol. 259, 43-94.
41. Record, M. T., & Mossing, M. C. (1987) in RNA Polymerase and the Regulation of Transcription (Reznikoff, W. S., Ed.) pp 61-83, Elsevier, New York, NY.
42. Record, M. T., Jr., Lohman, T. M., & deHaseth, P. L. (1976) J. Mol. Biol. 107, 145-158.
43. Record, M. T., Jr., Ha, J. H., & Fisher, M. A. (1991) Methods Enzymol. 208, 291-343.
44. Reznikoff, W. S. (1992a) J. Bacteriol. 174, 655-658.
45. Reznikoff, W. S. (1992b) Mol. Microbiol. 6, 2419-2422.
46. Richey, B., Cayley, D. S., Mossing, M. C., Kolka, C., Anderson, C. F., Farrar, T. C., & Record, M. T. (1987) J. Biol. Chem. 262, 7157-7164.
47. Robinson, C. R., & Sligar, S. G. (1995) Methods Enzymol. 259, 395-426.
48. Robinson, C. R., & Sligar, S. G. (1996) Protein Sci. 5, 2119-2124.
49. Royer, C. A. (1995) Methods Enzymol. 259, 357-377.
50. Saxe, S. A., & Revzin, A. (1979) Biochemistry 18, 255-263.
51. Schmitz, A. (1981) Nucleic Acids Res. 9, 277-292.
52. Schultz, S., Shields, G., & Steitz, T. (1991) Science 253, 1001-1007.
53. Shanblatt, S., & Revzin, A. (1987) J. Biol. Chem. 262, 11422-11427.
54. Spolar R. S., & Record, M. T., Jr. (1994) Science 263, 777-784.
55. Sprague, E. D., Larrabee, C. E., & Halsall, H. B. (1980) Anal. Biochem. 101, 175-181.
56. Steitz, T. A., Ohlendorf, D., McKay, D. B., Anderson, W., & Matthews, J. B. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 3097-3100.
57. Stickle, D. F., Liu, G., & Fried, M. G. (1994a) Eur. J. Biochem. 226, 869-876.
58. Stickle, D. F., Vossen, K. M., Riley, D. A., & Fried, M. G. (1994b) J. Theor. Biol. 168, 1-12.
59. Timasheff, S. N. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 67-97.
60. Wyman, J. (1964) Adv. Protein Chem. 19, 223-275.
61. Zimmerman, S. B., & Minton, A. P. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 27-65.
62. Zinkel, S. S., & Crothers, D. M. (1990) Biopolymers 29, 29-38.