X-ray microscopy and imaging of Escherichia coli, LPS and DNA

Journal of Microscopy

Volumn 188, Issue 2, 1997, Pages 96-105

  Rajyaguru, J M ^a   Kado, M ^b   Torres, D ^b   Richardson, M ^b   Muszynski, M J ^a  

^a ARNOLD PALMER HOSPITAL FOR CHILDREN   (United States)

^b UNIVERSITY OF CENTRAL FLORIDA   (United States)

Author keywords

Atomic force microscopy; DNA; Escherichia coli; High resolution; Laser plasmas; Lipopolysaccharide; Ultrastructure; X ray micrography

Indexed keywords

ATOMIC FORCE MICROSCOPY; ELECTRON BEAMS; ELECTRON SOURCES; ESCHERICHIA COLI; ESTERS; MICROSTRUCTURE; PHOTORESISTS; SCANNING ELECTRON MICROSCOPY; X RAY MICROSCOPES; X RAY SCATTERING;

ATOMIC-FORCE-MICROSCOPY; HIGH RESOLUTION; LASER-PLASMAS; LIPOPOLYSACCHARIDES; POLY-METHYL METHACRYLATES; SINGLE-SHOT; ULTRASTRUCTURE; X RAY MICROSCOPY; X-RAY MICROGRAPHY; X-RAY SOURCES;

LASER PRODUCED PLASMAS;

BACTERIAL DNA; COMPLEMENTARY DNA; ESCHERICHIA COLI LIPOPOLYSACCHARIDE; POLY(METHYL METHACRYLATE);

ARTICLE; ATOMIC FORCE MICROSCOPY; BACTERIUM CULTURE; ESCHERICHIA COLI; IMAGE ANALYSIS; NONHUMAN; PRIORITY JOURNAL; SCANNING ELECTRON MICROSCOPY; ULTRASTRUCTURE; X RAY ANALYSIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0030814912     PISSN: 00222720     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2818.1997.2530810.x     Document Type: Article

References (52)

1. Arakawa, H., Umemura, K. & Ikai, A. (1992) Protein images obtained by STM, AFM and TEM. Nature. 358, 171-175.
2. Arnsdorf, M.F. & Lal. R. (1992) Recent progress with atomic force microscopy in biology: molecular resolution of cell membranes, constituent biomolecules, and microcrystals. SPIE (Imaging Technologies and Applications), 1778, 112-116.
3. Binnig, G., Rohrer, H., Gerber, C. & Weibel, E. (1982) Surface studies by scanning tunneling microscopy. Phys. Rev. Lett. 49, 57-61.
4. Binning, G., Quate, C.F. & Gerber, C. (1986) Atomic force microscope. Phys. Rev. Lett. 56, 930-935.
5. Butt, H.-J.. Wolff, E.K., Gould, S.A.C., Dixon Northern, B., Peterson. C.M. & Hansma, P.K. (1990) Imaging cells with the atomic force microscope. J. Struct. Biol. 105, 54-61.
6. Chapin-Robertson, K. & Edberg, S.C. (1991) Microscopy. Manual of Clinical Microbiology. 5th edn (ed. by A. Ballows, W. J. Hausler Jr. K. L. Herrman, H. D. Isenberg and H. J. Shadomy), pp. 29-35.
7. American Society for Microbiology, Washington, DC. Cotton, R.A. & Fletcher, J. (1992) Bringing soft X-ray contact microscopy to the biologist. Proc. RMS. 27, 77-80.
8. DeMeis, R. (1996) X-ray imaging. Laser plasma 'X-rays' living organisms. Laser Focus World. June, 57-38.
9. Drake, B., Prater, C.B., Weisenhorn, A.L., Gould, S.A.C., Albrecht, T.R., Quate, C.F., Cannell, D.S., Hansma, H.G. & Hansma, P.K. (1989) Imaging crystals, polymers and processes in water with the atomic force microscope. Science. 243, 1586-1589.
10. Edstrom, R.D., Meinke, M.H., Yang, X.R., Yang, R., Elings, V. & Evans, D.F. (1990) Direct visualization of phosphorylase-kinase complexes by scanning tunneling and atomic force microscopy. Biophys. J. 58, 1437-1448.
11. Feder, R., Banton, V. Sayre, D., Costa, J., Baldini, M. & Kim. B. (1985) Direct imaging of live human platelets by flash X-ray microscopy. Science, 227, 63-64.
12. Gould, S.A.C., Drake, B., Prater, C.B., Weisenhorn, A.L., Manne, S., Hansma, H.G., Hansma, P.K., Massie. J., Longmire, M., Elings, V., Dixon Northern, B., Mukergee, B., Peterson, C.M., Stoeckenius, W., Albrecht, T.R. & Quate, C.F. (1990) From atoms to integrated circuit chips, blood cells, and bacteria with the atomic force microscope. J. Vac. Sci. Technol. A8, 369-373.
13. Gould, S., Marti, O., Drake, B., Hellemans, L., Bracker, C.E., Hansma, P.K., Keder, N.L., Eddy, M.M. & Stucky, G.D. (1988) Molecular resolution images of amino acid crystals with the atomic force microscope. Nature: 332, 332-334.
14. Griffith, J.E., Grigg, D.A., Vasile, M.J., Russell, P.E. & Fitzgerald, E.A. (1992) Scanning probe metrology. J. Vac. Sci. Technol. A10, 674-679.
15. Hansma, H.G., Bezanilla, M., Zenhausern, F., Adrian, M. & Sinsheimer, R.L. (1995a) Atomic force microscopy of DNA in aqueous solutions. Nucl. Acids Res. 21, 505-512.
16. Hansma, H.G., Sinsheimer, R.L., Groppe, J., Bruice, T.C., Elings, V., Gurley, G., Bezanilla, M., Mastrangelo, I.A., Hough, P.V.C. & Hansma, P.K. (1993b) Recent advances in atomic force microscopy of DNA. Scanning. 15, 296-299.
17. Hansma, H.G., Sinsheimer, R.L., Li, M.-Q., & Hansma, P.K. (1992) Atomic force microscopy of single and double stranded DNA. Nucl. Acids Res. 20, 3585-3590.
18. Hansma, H.G., Weisenhorn, A.L., Edmundson, A.B., Gaub, H.E. & Hansma, P.K. (1991) Atomic force microscopy: seeing molecules of lipid and immunoglobulin. Clin. Chem. 57, 1497-1501.
19. Henderson, E., Haydon, P.G., & Sakaguchi, D.S. (1992) Actin filament dynamics in living glial cells imaged by atomic force microscopy. Science, 257, 1944-1949.
20. Hoh, J.H. & Hansma, P.K. (1992) Atomic Force Microscopy for high resolution imaging in cell biology. Trends Cell Biol. 7, 208-213.
21. Ikai, A., Yoshimura, K., Arisaka, F., Ritani, A. & Imai, K. (1993) Atomic force microscopy of bacteriophage T4 and its tube-baseplate complex. FEBS Lett. 326, 59-41.
22. Ill, C.R., Keivens, V.M., Hale, J.E., Nakamura, K.K., Jue, R.A., Cheng, S., Melcher, E.D., Drake, B. & Smith, M.C. (1993) A COOH-terminal peptide confers regiospecific orientation and facilitates atomic force microscopy of an IgG/sub 1. Biophys. J. 64, 919-924.
23. Kado, M., Nekula, K., Richardson, M.C., Yamamoto, Y. & Friedman, H. (1996) Direct ultrastructural imaging of macrophages using a novel X-ray contact microscopy. FASEB 10, A824.
24. Kasas, S., Gotzos, V. & Celio, M.R. (1993) Observation of living cells using the atomic force microscope. Biophys. J. 64, 539-544.
25. Kay, D. (1976) Electron microscopy of small particles, macromolecular structures and nucleic acids. Methods in Microbiology, Vol. 9 (ed. by J. R. Norris). pp. 177-215. Academic-Press. London.
26. Kido, N., Ohta, M. & Kato, N. (1990) Detection of lipopolysaccharide by ethidium bromide staining after sodium dodecyl sulfatepolyacrylamide gel eleclrophoresis. J. Becteriol. 172, 1145.
27. Lal, R. & John, S.A. (1994) Biological applications of atomic force microscope. Am. J. Physiol. 266, C1-C21.
28. Lichfeld, K.G. (1976) Transmission electron microscopy of bacteria. Methods in Microbiology. Vol. 9 (ed. by J. R. Norris). pp. 127-176. Academic Press. London.
29. Marti, O., Ribi, H.O., Drake, B., Albrecht Quate, C.F. & Hansma, P.K. (1988) Atomic force microscopy of an organic monolayer. Science, 259, 50-52.
30. Meyer-Ilse, W., Gutmann, P.A., Thieme, J., Rudolph, D., Schmahl. G., Anderson, K., Batson, P., Attwood, D., Isklander, N. & Kern. D. (1992) Experimental characterization of zone plates for high resolution X-ray microscopy. X-ray Microscopy III (ed. by A. G. Michette, G. R. Morrison and C. J. Buckley). pp. 284-289. Springer-Verlag, Berlin.
31. Neiman, B. (1992) X-ray microscope with the Gottingen scanning X-ray microscope at 2.4 nm. X-ray Microscopy III (ed. by A. G. Michette. G., R. Morrison and C. J. Buckley), pp. 143-150. Springer-Verlag, Berlin.
32. Nui, L., Shaiu, W.-L., Vesenka, J., Larson, D.D. & Henderson, E. (1995) Atomic force microscopy of DNA-colloidal gold and DNA-protein interactions. SPIE. 1891, 71-77.
33. Ohnesorge, F. & Binning. G. (1993) True atomic resolution by atomic force microscopy through repulsive and attractive forces. Science, 260, 1451-1456.
34. Parpura, V. Haydon, P.G. & Henderson, E. (1995) Three dimensional imaging of living neurons and glia with the atomic force microscope. J. Cell Sci. 104, 427-452.
35. Rajyaguru, J.M., Kado, M., Nekula, K., Torres, D., Richardson, M. & Muszynski, M.J. (1996a) Direct high resolution (nm scale) ultrastructural X-ray imaging of live hydrated Escherichia coli. 96th Gen Meeting Am. Soc. Microbiol. Abstr. #J7. New Orleans. LA.
36. Rajyaguru, J.M., Kado, M., Nekula, K., Torres. D., Richardson, M. & Muszynski, M.J. (1996b) Ultrastructural X-ray imaging and molecular modelling of hydrated biological specimen using laser plasma pulsed point X-ray sources. FASEB J. 10, A824.
37. Rajyaguru, J.M., Muszynski, M.J., Kado, M. & Richardson, M. (1995) Application of X-rays to obtain ultrastructural images of microbes and macromolecules. 95th General Meeting Am. Soc. Microbiol. Abstr. #J9. Washington. DC.
38. Rees, W.A., Keller, R.W., Vesenka, J.P., Yang, C. & Bustamante, C. (1995) Scanning force microscopy imaging of transcription complexes: evidence for DNA bending in open promoter and elongation complexes. Science. 260, 1646-1649.
39. Richardson, M., Shinohara, K., Tanaka, K.A., Kinjo, Y., Ikeda, N. & Kado, M. (1992) Pulsed X- ray microscopy of biological specimens with laser plasma sources. SPIE, Soft X-ray Microsc. 1741, 133-141.
40. Schubert, F.A., Henn, C. & Engel, A. (1995) Native Escherichia coli OmpF porin surfaces probed by atomic force microscopy. Science, 268, 92-94.
41. Shinohara, K. (1990) Application of X-ray microscopy to mammalian cells. X-ray Microscopy in Biology and Medicine (ed. by K. Shinohara, K. Yada, H. Kihara and T. Saito), pp. 203-212. Springer-Verlag. Berlin.
42. Singh, S. & Keller, D.J. (1991) Atomic force microscopy of supported planar membrane bilayers. Biophys. J. 60, 1401-1410.
43. Takahashi, S. & Nagano. Y. (1984) Rapid procedure for isolation of plasmid DNA and application to epidemiological analysis. J. Clin. Microbiol. 20, 608.
44. Thundat, T., Allison, D.P., Warmack, R.J., Doktycz, M.J., Jacobson, K.B. & Brown, G.M. (1993) Atomic force microscopy of single and double stranded deoxyribonucleic acid. J. Vac. Sci. Technol. A11, 824-828.
45. Thundat, T., Allison, D.P., Warmack, R.J. & Ferrall, L. (1992) Imaging isolated strands of DNA molecules by atomic force microscopy. Ultramicroscopy. 42-44, 1101-1106.
46. Tillmann, R., Radmacher, M. & Gaub, H.E. (1992) Hydrated amorphous silicon oxide surface at 3 angstrom resolution by scanning force microscopy. Appl. Phys. Lett. 60, 3111-3113.
47. Weisenhorn, A.L., Drake, B., Prater, C.B., Gould, S.A.C., Hansma, P.K., Ohnesorge, K. Egger, M., Heyn, S.P. & Gaub, H.E. (1990) Immobilised proteins in buffer imaged at molecular resolution by atomic force microscopy. Biophys. J. 58, 1251-1258.
48. Wickramasinghe, H.K. (1990) Scanning probe microscopy: current status and future trends. J. Vac. Sci. Technol. A8, 363-368.
49. Wigren, R., Elwing, H., Erlandson, E., Welin, S. & Lundstrom, I. (1991) Structure of fibrinogen obtained by scanning force microscopy. FEBS Lett. 280, 225-228.
50. Yang, J., Takeyasu, K. & Shao, Z. (1992) Atomic force microscopy of DNA molecules. FEBS Lett. 301, 173-176.
51. Zasadzinski, J.A., Helm, C.A., Longo, M.L., Weisenhorn, A.L., Gould, S.A. & Hansma, P.K. (1991) Atomic force microscopy of hydrated phosphatidylethanolamine bilayers. Biophys. J. 59, 755-760.
52. Zenhausern, R. Adrian, M., Heggeler-Bordier, B., Eng. L.M. & Descouts, P. (1992) DNA and RNA polymerase/DNA complexes images by scanning force microscopy: influence of molecular-scale friction. Scanning, 14, 212-217.