Evolution of RNA-binding specificity in T4 DNA polymerase

Journal of Biological Chemistry

Volumn 272, Issue 28, 1997, Pages 17703-17710

  Wang, Chien Chia ^a,b   Pavlov, Andrey ^a   Karam, Jim D ^a  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA POLYMERASE; RNA;

ARTICLE; BACTERIOPHAGE T4; DNA SYNTHESIS; ENZYME ACTIVITY; ENZYME SPECIFICITY; EVOLUTION; GENE EXPRESSION REGULATION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN RNA BINDING;

BACTERIOPHAGE T4; BASE SEQUENCE; COLIPHAGES; DNA, VIRAL; DNA-DIRECTED DNA POLYMERASE; EVOLUTION, MOLECULAR; EXONUCLEASES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OPERON; PROTEIN BIOSYNTHESIS; RECOMBINANT FUSION PROTEINS; REPRESSOR PROTEINS; RNA; RNA-BINDING PROTEINS; SUBSTRATE SPECIFICITY; VIRAL PROTEINS;

EID: 0030808164     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.28.17703     Document Type: Article

References (44)

1. Goulian, M., Lucas, Z. J., and Kornberg, A. (1968) J. Biol. Chem. 243, 627-638
2. Andrake, M., Guild, N., Hsu, T., Gold, L., Tuerk, C., and Karam, J. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 7942-7946
3. Kreuzer, K. N., and Morrical, S. W. (1994) in Molecular Biology of Bacteriophage T4 (Karam, J. D., Drake, J. W., Kreuzer, K. N., Mosig, G., Hall, D. W., Eiserling, F. A., Black, L. W., Spicer, E. K., Kutter, E., Carlson, K., and Miller, E. S., eds) pp. 28-42, American Society of Microbiology, Washington, D. C.
4. Andrake, M., and Karam, J. D. (1991) Genetics 128, 203-213
5. Pavlov, A. R., and Karam, J. D. (1994) J. Biol. Chem. 269, 12968-12972
6. Tuerk, C., Eddy, S., Parma, D., and Gold, L. (1990) J. Mol. Biol. 213, 749-761
7. Nossal, N. G. (1994) in Molecular Biology of Bacteriophage T4 (Karam, J. D., Drake, J. W., Kreuzer, K. N., Mosig, G., Hall, D. W., Eiserling, F. A., Black, L. W., Spicer, E. K., Kutter, E., Carlson, K., and Miller, E. S., eds) pp. 43-53, American Society for Microbiology, Washington, D. C.
8. Reha-Krantz, L. (1994) in Molecular Biology of Bacteriophage T4 (Karam, J. D., Drake, J. W., Kreuzer, K. N., Mosig, G., Hall, D. W., Eiserling, F. A., Black, L. W., Spicer, E. K., Kutter, E., Carlson, K., and Miller, E. S., eds) pp. 307-312, American Society for Microbiology, Washington, D. C.
9. Frey, M. W., Nossal, N. G., Capson, T. L., and Benkovic, S. J. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 2579-2583
10. Joyce, C. M., and Steitz, T. A. (1995) J. Bacteriol. 177, 6321-6329
11. Russell, R. L. (1974) Genetics 78, 967-988
12. O'Donnell, P. V., and Karam, J. D. (1972) J. Virol. 9, 990-998
13. Wang, C.-C., Yeh, L.-S., and Karam, J. D. (1995) J. Biol. Chem. 270, 26558-26564
14. Wood, W. B. (1966) J. Mol. Biol. 16, 118-133
15. Studier, F. W., and Moffatt, B. A. (1986) J. Mol. Biol. 189, 113-130
16. Sambrook, J. F., Fan, D. P., and Brenner, S. (1967) Nature 214, 452-453
17. Hughes, M. B., Yee, A. M. F., Dawson, M., and Karam, J. (1987) Genetics 115, 393-403
18. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-328
19. Lin, T.-C., Karam, G., and Konigsberg, W. H. (1994) J. Biol. Chem. 269, 19286-19294
20. Russell, R. L., and Huskey, R. J. (1974) Genetics 78, 989-1014
21. Russell, R. L. (1967) Speciation among the T-even Bacteriophages, Ph.D. thesis, California Institute of Technology, University Microfilms Inc., Ann Arbor, MI
22. Hsu, T., and Karam, J. D. (1990) J. Biol. Chem. 265, 5303-5316
23. Guild, N., Gayle, M., Sweeney, R., Hollingsworth, T., Modeer, T., and Gold, L. (1988) J. Mol. Biol. 199, 241-258
24. Miller, E. S., and Jozwik, C. E. (1990) J. Bacteriol. 172, 5180-5186
25. Jozwik, C. E., and Miller, E. S. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 5053-5057
26. Tuerk, C., and Gold, L. (1990) Science 249, 505-510
27. Miller, E. S., Karam, J. D., and Spicer, E. (1994) in Molecular Biology of Bacteriophage T4 (Karam, J. D., Drake, J. W., Kreuzer, K. N., Mosig, G., Hall, D. W., Eiserling, F. A., Black, L. W., Spicer, E. K. Kutter, E., Carlson, K., and Miller, E. S., eds) pp. 193-205, American Society for Microbiology, Washington, D. C.
28. Russel, M., Gold, L., Morrissett, H., and O'Farrell, P. Z. (1976) J. Biol. Chem. 251, 7263-7270
29. Mudd, E. A., Prentki, P., Belin, D., and Krisch, H. M. (1988) EMBO J. 7, 3601-3607
30. Haile, D. J., Rouault, T. A., Tang, C. K., Chin, J., Harford, J. B., and Klausner, R. D. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 7536-7540
31. Basilion, J. P., Rouault, T. A., Massinople, C. M., Klausner, R. D., and Burgess, W. H. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 574-578
32. Philpott, C., Klausner, R. D., and Rouault, T. A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7321-7325
33. Chu, E., Voeller, D., Koeller, D. M., Drake, J. C., Takimoto, C. H., Maley, G. F., Maley, F., and Allegra, C. J. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 517-521
34. Chu, E., Takimoto, C. H., Voeller, D., Grem, J. L., and Allegra, C. J. (1993) Biochemistry 32, 4756-4760
35. Singh, R., and Green, M. R. (1993) Science 259, 365-368
36. Chu, E., Koeller, D. M., Casey, J. L., Drake, J. C., Chabner, B. A., Elwood, P. C., Zinn, S., and Allegra, C. J. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 8977-8981
37. Preiss, T., Hall, A. G., and Lightowlers, R. N. (1993) J. Biol. Chem. 268, 24523-24526
38. Grosse, F., Nasheuer, H-P., Scholtissek, S., and Schomburg, U. (1986) Eur. J. Biochem. 160, 459-467
39. Hentze, M. W. (1994) Trends Biochem. Sci. 19, 101-103
40. Draper, D. (1995) Annu. Rev. Biochem. 64, 593-620
41. Gold, L., Polisky, B., Uhlenbeck, O., and Yarus, M. (1995) Annu. Rev. Biochem. 64, 763-797
42. Wang, C.-C. (1997) Structural Organization and RNA-Binding Properties of the DNA Polymerases of Bacteriophages T4 and RB69. Ph.D. thesis, Tulane University, New Orleans, LA (available from University Microfilms Inc., Ann Arbor, MI)
43. Wang, J., Sattar, A. K. M. A., Wang, C.-C., Karam, J. D., Konigsberg, W. H., and Steitz, T. A. (1997) Cell, in press
44. Dressman, H. K., Wang, C.-C., Karam, J. D., and Drake, J. W. (1997) Proc. Natl. Acad. Sci. U. S. A., in press