Linkage disequilibrium measures for fine-scale mapping: A comparison

Human Heredity

Volumn 47, Issue 6, 1997, Pages 301-314

  Guo, Sun Wei ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Fine scale mapping; Linkage disequilibrium; Linkage disequilibrium measures; Mutation; Population genetics

Indexed keywords

ARTICLE; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENE MUTATION; GENETIC RECOMBINATION; MARKER GENE; MATHEMATICAL GENETICS;

EID: 0030807876     PISSN: 00015652     EISSN: 14230062     Source Type: Journal    
DOI: 10.1159/000154430     Document Type: Article

References (32)

1. Devlin B, Risch N: A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 1995; 29:311-322.
2. Weber JL, Wong C: Mutation of human short tandem repeats. Hum Mol Genet 1993:2:1123-1128.
3. Carothers AD, Wright AF: The effect of mutation on linkage disequilibrium. Ann Hum Genet 1992;56: 155-158.
4. Xiong MM, Guo SW: Fine-scale mapping based on linkage disequilibrium: Theory and applications. Am J Hum Genet 1997:60:1513-1531.
5. Breslow N, Day NE: Statistical Methods in Medical Research, vol 1. The Analysis of Case-Control Studies. Lyon. IARC. 1980.
6. Cornfield J: A method of estimating comparative rates from clinical data. Applications to cancer of the lung, breast and cervix. J Natl Cancer Inst 1951:11:1269-1275.
7. Levin ML: The occurrence of lung cancer in man. Acta Unio Int Contra Cancrum 1953;19:531-541.
8. Bengtsson BO, Thomson G: Measuring the strength of associations between HI.A antigens and diseases. Tissue Antigenes 1981; 18:356-363.
9. Thomson G: A review of theoretical aspects of HLA and disease associations. Theor Pop Biol 1981:20:168- 208.
10. Cole P, MacMahon B: Attributable risk percent in case-control studies. Br J Prev Soc Med 1971:25:242-244.
11. Lewontin RC, Kojima K: The evolutionary dynamics of complex polymorphisms. Evolution 1960:14: 450-472.
12. Robbins RB: Some applications of mathematics to breeding problems. III. Genetics 1918;3:375-389.
13. Levin ML, Bertell R: Re: Simple estimation of population attributable risk from case-control studies. Am J Epidemiol 1978:108:78-79.
14. Ozelius U, Kramer PL, deLeon D, Risch N, Bressman SB, Schuback DE, Brin MF, Kwaitkowski DJ, Burke RE, Gusella JF, Fahn S, Brea-kefield XO: Strong allelic association between the torsion dystonia gene (DYT1) and loci in chromosome 9q34 in Ashkenazi Jews. Am J Hum Genet 1992:50:619-628.
15. Ozelius LJ, Teitz SS, Buekler A, Hervitt J, Gasser T, deLeon D, Kramer PL, Risch N. Brcssman SB, Housman D, Fahn S, Gusella JF, Brcakefield XO: Fine mapping of the torsion dystonia gene (DYT1) on 9q34 and evaluation of a candidate gene. Am J Hum Genet 1992; 51(suppl):A224.
16. Risch N, deLeon D, Ozelius LJ, Kramer P. Bressman S, Kwiatkowski D, Brin MF. et al: The genetics of torsion dystonia in Ashkenazi Jews: in Molecular Genetics and Neuropsychiatrie Disorders. Scientific Program and Abstracts, Israel Ministry of Sciences and Technology, 1991. P A6.
17. Risch N, deLeon D, Ozelius LJ, Kramer P, Almasy L, Singer B, Fahn S, Breakefield X. Brcssman S: Genetic analysis of idiopathic torsion dystonia in Ashkenazi Jews and their recent descent from a small founder population. Nat Genet 1995:9:152-159.
18. Lchesjoki A-E, Koskiniemi M, Norio R, Tirrito S, Sistonen P, Lander E, de la Chapelle A: Localization of the EPMI gene for progressive myoclonus epilepsy on chromosome 21: Linkage disequilibrium allows high resolution mapping. Hum Mol Genet 1993:2:1229-1234.
19. Kaplan NL, Hill WG, Weit BS: Likelihood methods for locating disease genes in noncquilibrium populations. Am J Hum Genet 1995:56: 18-32.
20. Ohta T, Kimura M: A model of mutation appropriate to estimate the number of electrophorctically detectable alleles in a finite population. Genet Res 1973:22:201-204.
21. Shriver MD, Lin L, Chakraborty R, Boerwinkle E: VNTR allele frequency distributions under the stepwise mutation model: A computer simulation approach. Genetics 1993:134: 983-993.
22. Valdes AM, Slatkin M, Freimer N: Allele frequencies at microsatellitc loci: The stepwise model revisited. Genetics 1993:133:737-749.
23. Xiong MM, Guo SW: A general stepwise mutation model with applications to microsalellite loci. I. Theoretical characterizations, submitted.
24. Weir BS: Locating the cystic fibrosis gene on the basis of linkage disequilibrium with markers? Elston RC, Spence MA, Hodge SE, MacCluer JW (eds): Multipoint Mapping and Linkage Based on Affected Pedigree Members: Genetic Analysis Workshop 6. New' York. Liss. 1989. pp 81-86.
25. Hill WG, Weir BS: Maximum-likeli-hood estimation of gene location by linkage disequilibrium. Am J Hum Genet 1994;54:705-714.
26. Hill WG, Robertson A: Linkage disequilibrium in finite populations. Theor Appl Genet 1968;38:226-231.
27. Haberman SJ: The analysis of residuals in cross-classification tables. Biometrics 1973:29:205-220.
28. Terwilliger JD: A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic loci. Am J Hum Genet 1995:56:777-787.
29. Nei M, Li W-H: Non-random association between electromorphs and inversion chromosomes in finite populations. Genet Res 1980:35: 65-83.
30. Kaplan NL, Weir BS: Expected behavior of conditional linkage disequilibrium. Am J Hum Genet 1992:51:333-343.
31. Yule GU: On the association of association of attributes in statistics. Philos Trans R Soc London A 1990: 194:257-319.
32. Lewontin RC: The interaction of selection and linkage. I. General considerations: Heterotic models. Genetics 1964:49:49-67.