Detection of eubacteria in interstitial cystitis by 16s rDNA amplification

Journal of Urology

Volumn 158, Issue 6, 1997, Pages 2291-2295

  Heritz, Dianne M ^a,b   Lacroix, Jean Michel Y ^a   Batra, Sukhsatej D ^a   Jarvi, Keith A ^a   Beheshti, B ^a   Mittelman, Marc W ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b Urology Clinic   (Canada)

Author keywords

16S rRNA; Eubacteria; Interstitial cystitis; Polymerase chain reaction

Indexed keywords

RIBOSOME DNA; RNA 16S;

ADULT; AGED; ARTICLE; BACTERIAL FLORA; BACTERIUM DETECTION; CLINICAL ARTICLE; CONTROLLED STUDY; EUBACTERIUM; FEMALE; GENE AMPLIFICATION; HUMAN; HUMAN TISSUE; INTERSTITIAL CYSTITIS; MALE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0030806685     PISSN: 00225347     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-5347(01)68237-5     Document Type: Article

References (32)

1. Gillenwater, J. Y. and Wein, A. J.: Summary of the National Institutes of Arthritis, Diabetes, Digestive and Kidney Diseases workshop on interstitial cystitis, National Institutes of Health, Bethesda, Maryland, August 28-29, 1987. J. Urol., 140: 203, 1988.
2. Messing, E. M. and Staney, T. A.: Interstitial cystitis: early diagnosis, pathology, and treatment. Urology, 12: 381, 1978.
3. Marshall, B. J. and Warren, J. R.: Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet, 1: 1311, 1994.
4. Koziol, J. A., Hans-Peter, A. and Frutos, A.: Discrimination between the ulcerous and the nonulcerous forms of interstitial cystitis by non-invasive findings. J. Urol., 155: 87, 1996.
5. Keay, S., Schwalbe, R. S., Trifillis, A. L., Lovchik, J. C., Jacobs, S. and Warren, J. W.: A prospective study of microorganisms in urine and bladder biopsies from interstitial cystitis patients and controls. Urology, 45: 223, 1995.
6. Domingue, G. J., Ghoniem, G. M., Bost, K. L., Fermin, C. and Human, L. G.: Dormant microbes in interstitial cystitis. J. Urol., 153: 1321, 1995.
7. Haarala, M., Jalava, J., Laato, M., Kiilholma, P., Nurmi, M. and Alanen, A.: Absence of bacterial DNA in the bladder of patients with interstitial cystitis. J. Urol., 156: 1843, 1996.
8. Relman, D. A.: Universal bacterial 16S rDNA amplification and sequencing. In D. H. Persing, T. F. Smith, F. C. Tenover and T. J. White (ed.), Diagnostic Molecular Microbiology. Principles and Applications. American Society for Microbiology, Washington, D. C. pp. 489-495, 1993.
9. Lacroix, J.-M.: DNA fragment size determination on agarose gel by using the application GEL. Comp. Appl. Biosci., 10: 185, 1994.
10. Lacroix, J-M., Jarvi, K., Batra, S. D., Heritz, D. M. and Mittelman, M. W.: PCR-based technique for the detection of bacteria in urine and semen. J. Microbiol. Methods Accepted for publication 1996.
11. Schaffer, H. E. and Sederoff, R. R.: Improved estimation of DNA fragment lengths from agarose gels. Anal.: Biochem., 115: 113, 1981.
12. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., et al.: Short Protocols in Molecular Biology. John Wiley & Sons, New York, NY, 1992.
13. Silhavy, T. J., Berman, M. L. and Enquist, L. W.: Experiments with Gene Fusions. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y. 1984.
14. Sanger, F. S., Nicklen A. and Coulson, A. R.: DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA, 74: 5463, 1977.
15. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J.: A basic local alignment search tool. J. Mol. Biol., 215: 403, 1990.
16. Maidak, B. L., Larsen, M. J., McCaughey, R., Overbeek, G. J., Olsen, K., Fogel A., Blandy, J. and Woese, C. R.: The ribosomal database project. Nucl. Acids Res., 22: 3485, 1994.
17. Felsenstein, J.: Phylogeny Inference Package (Version 3.2). Cladistics, 5: 164, 1989.
18. Page, R. D. M.: Tree View: an application to display phylogenetic trees on personal computers. Comp. Appl. Biosci., In press, 1996.
19. Warren, J. W.: Interstitial cystitis as an infectious disease. U. C. N. A., 21: 31, 1994.
20. Elliott, T. S. J., Slack, R. C. B. and Bishop, M. C.: Scanning electron microscopy of human bladder mucosa in acute and chronic urinary tract infection. Br. J. Urol., 56: 38, 1984.
21. Huntgren, S. J., Porter, T. N., Schaeffer, A. J. and Duncan, J. L.: Role of type 1 pili and effects of phase variation on lower urinary tract infections produced by Escherichia coli. Infect. Immun., 50: 370, 1985.
22. Elgavish, A., Pattanaik, A., Lloyd, K. and Reed, R.: Integrin-mediated adhesive properties of uroepithelial cells are inhibited by treatment with bacterial toxins. American Physiological Society, 266(6 pt 1): C1552, June 1994.
23. Lynes, W. L., Fontana, C. A., Sellers, R. G. and Dairiki-Shortliffe, L. M.: The evidence for occult bacterial infections as a cause for interstitial cystitis. J. Urol., 141: 268A, 1989.
24. Wilkins, E. G., Payne, S. R., Pead, P. J., Moss, S. T. and Maskell, R. M.: Interstitial cystitis and the urethral syndrome: a possible answer. Br. J. Urol., 64: 39, 1989.
25. Jarvi, K, Lacroix, J.-M., Jain, A., Dimitro, I., Heritz, D. M. and Mittelman, M. W.: PCR based detection of bacteria in semen of infertile men. Fertil. Steril., 66: 463, 1996.
26. Chen, K. H., Neimark, H., Rumore, P. and Steinman, C. R.: Broad-range DNA probes for detecting and amplifying eubacterial nucleic acids: FEMS Microbiol. Lett., 57: 19, 1989.
27. Relman, D. A., Lepp, P. W., Sadler, K. N. and Schmidt, T. M.: Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria. Mol. Microbiol., 6: 1801, 1992.
28. Relman, D. A., Loutit, J. S., Schmidt, T. M., Falkow, S. and Thompkins, L. S.: The agent of bacillary angiomatis. An approach to the identification of uncultured pathogens. N. Engl. J. Med., 323: 1573, 1990.
29. Relman, D. A., Schmidt, T. M., MacDermott, R. P. and Falkow, S..: Identification of the uncultured bacillus of Whipple's disease. N. Engl. J. Med., 327: 293, 1992.
30. Weisburg, W. G., Barns, S. M., Pelletier, D. A. and Lane, D. J.: 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol., 173: 697, 1991.
31. Wilson, K. H., Blitchington, R. B. and Greene, R. C.: Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J. Clin. Microbiol., 28: 1942, 1990.
32. Chen, K., Neimark, H., Rumore, P. and Steinman, C. R.: Broad-range DNA probes for detecting and amplifying eubacterial nucleic acids. FEMS Microbiol. Lett., 57: 19, 1989.