A macrocyclic bis-acridine shifts the equilibrium from duplexes towards DNA hairpins

Nucleic Acids Research

Volumn 25, Issue 13, 1997, Pages 2574-2581

  Slama Schwok, A ^a,b   Peronnet, F ^a   Hantz Brachet, E ^a   Taillandier, E ^a   Teulade Fichou, M P ^b   Vigneron, J P ^b   Best Belpomme, M ^a   Lehn, J M ^b  

^a CNRS   (France)

^b Centre de Recherche Interdisciplinaire en Biologie   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACRIDINE; DOUBLE STRANDED DNA; POLYNUCLEOTIDE;

ARTICLE; BINDING AFFINITY; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DNA BINDING; DNA CONFORMATION; DNA DENATURATION; DNA STRUCTURE; FLUORESCENCE; GEL ELECTROPHORESIS; PRIORITY JOURNAL; TEMPERATURE;

ACRIDINES; BINDING, COMPETITIVE; DNA; DNA, SINGLE-STRANDED; ELECTROPHORESIS, AGAR GEL; MACROMOLECULAR SUBSTANCES; NUCLEIC ACID CONFORMATION; OSMOLAR CONCENTRATION; POLY DA-DT; SPECTROMETRY, FLUORESCENCE;

EID: 0030802848     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.13.2574     Document Type: Article

References (57)

1. Van Holde, K. and Zlatanova, J. (1993) BioEssays, 16, 59-68.
2. Bianchi, M.E., Beltrme, M. and Paonessa, P. (1989) Science, 243, 1056-1059.
3. Copenhaver, G.P., Putnam, C.D., Denton, M.L. and Pikaard, C.S. (1994) Nucleic Acids Res., 22, 2651-2657.
4. Peters, R., King, C.-Y., Falsafi, S., Donahoe, P.K. and Weiss, M.A. (1995) Biochemistry, 34, 4569-4576.
5. Ségault, V., Mougin, A., Grégoire, A., Banroques, J. and Branlant, C. (1992) Nucleic Acids Res., 20, 3443-3451.
6. Weeks, K.M. and Cech, T.R. (1996) Science, 271, 345-348.
7. Golden, B.L and Cech, T.R. (1996) Biochemistry, 35, 3754-3763.
8. Allain, F.H.T., Gubser, C.C, Howe, P.W.A., Nagai, K., Neuhaus, D. and Varini, G. (1996) Nature, 80, 646-650.
9. Werner, M.H., Gronenbom, A.M. and Clore, G.M. (1996) Science, 271, 778-784.
10. Saga, S., Mizuno, S. and Yoshida, M. (1990) J. Biol. Chem., 265, 19424-19428.
11. Philippe, C. Bénard, L., Portier, C., Westhof, E., Ehresmann, B. and Ehresmann, C. (1995) Nucleic Acids Res., 23, 18-28.
12. Higashitani, A., Greenstein, D., Hirokawa, H., Asano, S. and Horiuchi, K. (1994) J. Mol. Biol., 237, 388-400.
13. Persson, C., Gerhart, E., Wagner, H. and Nordström, K. (1990) EMBO J., 9, 3767-3775.
14. Wilson, K.S. and von Hippel, P. (1995) Proc. Natl. Acad. Sci. USA, 92, 8793-8797.
15. Hanke, J.H., Hambor, J.E. and Kavathas, P. (1995) J. Mol. Biol., 246, 63-73.
16. McMurray, C.T. Wilson, W.D. and Douglass, J.O. (1991) Proc. Natl. Acad. Sci. USA, 88, 666-670.
17. Spiro, C., Richards, J.P., Chandrasekaran, S., Brennan, R.G. and McMurray, C.T. (1993) Proc. Natl. Acad. Sci. USA, 90, 4606-4610.
18. Chen, X., Mariappan, S.V.S., Catasti, P., Ratliff, R., Moyzis, R.K., Laayoun, A, Smith, S.S. and Gupta, G. (1995) Proc. Natl. Acad. Sci. USA, 92, 5199-5203.
19. Mariappan, S.V.S., Garcia, A.E. and Gupta, G. (1996) Nucleic Acids Res., 24, 775-783.
20. Pearson, C.E. and Sinden, R.R. (1996) Biochemistry, 35, 5041-5053.
21. Skripkin, E., Paillart, J.-C., Marquet, R., Ehresmann, B. and Ehresmann, C. (1994) Proc. Natl. Acad. Sci. USA, 91, 4945-4949.
22. Muriaux, D., Fossé, P. and Paoletti, J. (1996) Biochemistry, 35, 5075-5082.
23. Bordier, B., Hélène, C., Litvak, S. and Sarih-Cottin, L. (1992) Nucleic Acids Res., 20, 5999-6006.
24. François, J.C., Thuong, N.T. and Hélène, C. (1994) Nucleic Acids Res., 22, 3943-3950.
25. Chastain, M. and Tinoco, I., Jr (1993) In Crooke, S.T. and Lebleu, B. (eds), Antisense Research and Applications. CRC Press, Boca Raton, FL.
26. Corey, D.R., Munoz-Medellin, D. and Huang, A. (1995) Bioconjugate Chem., 6, 93-100.
27. Ecker, D.J., Vickers, T.A., Bruice, T.W., Freier, S.M., Jeninson, R.D., Manoharan, M. and Zounes, M. (1992) Science, 257, 958-961.
28. Cload, S.T. and Schepartz, A. (1994) J. Am. Chem. Soc., 116, 437-442.
29. Szostak, J.W. and Ellington, A.D. (1992) Nature, 355, 850-852.
30. Nelson, J.S., Giver, L., Ellington, A.D. and Letsinger, R.L. (1996) Biochemistry, 35, 5339-5344.
31. Harada, K., Martin, S.S. and Frankel, A.D. (1996) Nature, 380, 175-179, and references cited therein.
32. Tan, R. and Frankel, A.D. (1995) Proc. Natl. Acad. Sci. USA, 92, 5282-5286.
33. Chen, X., Burrows, C.J. and Rokita, S.E. (1992) J. Am. Chem. Soc., 114, 322-325.
34. Wilson, W.D., Ratmeyer, L., Cegal, M.T., Spychala, J., Boykin, D., Demeuynck, M., Lhomme, J., Krishnan, G., Kennedy, D., Vinayak, K. and Zon, G. (1994) New J. Chem., 18, 419-123.
35. Kappen, L.S. and Goldberg, I.H. (1993) Science, 261, 1319-1321.
36. Hensens, O.D., Chin, D.H., Stassinopoulos, A., Zink, D.L., Kappen, L.S. and Goldberg, I.H. (1994) Proc. Natl. Acad. Sci. USA, 91, 4534-4538.
37. Teulade-Fichou, M.P., Vigneron, J.P. and Lehn, J.M. (1995) Supramol. Chem., 5, 139-147.
38. Slama-Schwok, A., Teulade-Fichou, M.P., Vigneron, J.P., Taillandier, E. and Lehn, J.M. (1995) J. Am. Chem. Soc., 117, 6822-6830.
39. Dickerson, R.E. (1983) J. Mol. Biol., 166, 419-441
40. Loontiens, F.G., Regenfuss, P., Zechei, A., Dumortier, L. and Clegg, R.M. (1990) Biochemistry, 29, 9029-039.
41. Wolfram, S. (1991) Mathematica: A System for Doing Mathematics by Computers. Addison Wesley Publishing Co., Redwood, CA.
42. Press, W.H., Flannery, B.P., Teukolsky, S.A. and Vetterling, W.T. (1989) Numerical Recipes: The Art of Scientific Computing. Cambridge University Press, Cambridge, UK.
43. Marky, L.A., Blumenfels, K.S., Kozlowki, S. and Breslauer, K.J. (1983) Biopolymers, 22, 1247-1257.
44. Hald, M., Pedersen, J.B., Stein, P.C., Kirpekar, F. and Jacobsen, J.P. (1995) Nucleic Acids Res., 23, 4576-4582.
45. Pelta, J., Livolant, F. and Sikorav, J.-L. (1996) J. Biol. Chem., 271, 5656-5662, and references cited therein.
46. Widom, J. and Baldwin, R.L. (1983) Biopolymers, 22, 1595-1620.
47. Allison, S.A., Herr, J.C., Shurr, J.M. (1981) Biopolymers, 20, 469-488.
48. Hoopes, B.C. and McClure, W.R. (1981) Nucleic Acids Res., 9, 5493-5504.
49. Nadler, S.G., Merrill, B.M., Roberts, W.J., Keating, K.M., Lisbin, M.J., Barnett, S.F., Wilson, S.H. and Williams, K.R. (1991) Biochemistry, 30, 2968-2976.
50. Fernandez-Salz, M., Schneider, H.J., Sartorius, J. and Wilson, W.D. (1996) J. Am. Chem. Soc., 118, 739-1745.
51. Slama-Schwok, A. and Lehn, J.-M. (1990) Biochemistry, 29, 7895-7903
52. Glucksmann-Knis, M.A., Dai, X., Markiewicz, P. and Rothman-Denes, L.B. (1996) Cell, 84, 147-154.
53. Spiro, C., Richards, J.P., Chandrasekaran, S., Brennan, R.G. and McMurray, C.T (1993) Proc. Natl. Acad. Sci. USA, 90, 4606-4610.
54. Sha, Y., Lindahl, L. and Zengel, J.M. (1995) J. Mol. Biol., 245, 486-498.
55. Kikinis, Z., Eisenstein, R.S., Bettany, A.J.E. and Munro, H.N. (1995) Nucleic Acids Res., 23, 4190-4195.
56. Marino, J.P., Gregorian, R.S., Jr. Csankovszki, G. and Crothers, D.M. (1995) Science, 268, 1448-1454.
57. Barbeau, B., Bergeron, D., Beaulieu, M., Nadjem, Z. and Rassart, E. (1996) Biochim. Biophys. Acta Gene Struct. Expression, 1307, 220-232.