Strong, specific, monodentate G-C base pair recognition by N7-inosine derivatives in the pyrimidine·purine-pyrimidine triple-helical binding motif

Nucleic Acids Research

Volumn 25, Issue 10, 1997, Pages 1875-1882

  Marfurt, Judith ^a   Parel, Serge P ^a   Leumann, Christian J ^a  

^a UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HYPOXANTHINE; INOSINE DERIVATIVE; OLIGODEOXYNUCLEOTIDE; SODIUM CHLORIDE; SPERMINE;

ARTICLE; BASE PAIRING; BINDING SITE; DNA BINDING; DNA DNA HYBRIDIZATION; DNA FOOTPRINTING; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; MOLECULAR STABILITY; PH; PRIORITY JOURNAL; TRIPLE HELIX;

BASE COMPOSITION; BASE SEQUENCE; COMPUTER SIMULATION; CYTOSINE; DEOXYRIBONUCLEASE I; DNA; DNA FOOTPRINTING; ESCHERICHIA COLI; GUANINE; HYDROGEN BONDING; HYPOXANTHINE; INOSINE; INTERCALATING AGENTS; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGODEOXYRIBONUCLEOTIDES; PLASMIDS; PURINES; PYRIMIDINES; THERMODYNAMICS;

EID: 0030795715     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.10.1875     Document Type: Article

References (38)

1. Moser,H.E. and Dervan,P.B. (1987) Science, 238, 645-650.
2. François,J., Saison-Behmoaras,T. and Hélène,C. (1988) Nucleic Acids Res. 16, 11431-11440.
3. Durland,R.H., Kessler,D.J., Gunnell,S., Duvic,M., Pettitt,B.M. and Hogan,M.E. (1991) Biochemistry, 30, 9246-9255.
4. Beal,P.A. and Dervan,P.B. (1991) Science, 251, 1360-1363.
5. Best,G.C. and Dervan,P.B. (1995) J. Am. Chem. Soc. 117, 1187-1193.
6. Greenberg,W.A. and Dervan,P.B. (1995) J. Am. Chem. Soc. 117, 501-5022.
7. Sun,J.S., De Bizemont,T., Duval-Valentin,G., Montenay-Garestier,T. and Hélène.C. (1991) C. R. Acad. Sci. Paris,t. 313, Série III, 585-590.
8. Beal,P.A. and Dervan,P.B. (1992) J. Am. Chem. Soc. 114, 4976-4982.
9. De Bizemont,T., Duval-Valentin,G., Sun,J., Bisagni,E., Garestier,T. and Hélène,C. (1996) Nucleic Acids Res. 24, 1136-1143.
10. Froehler,B.C., Terhorst,T., Shaw,J. and McCurdy,S.N. (1992) Biochemistry, 31, 1603-1609.
11. Horne,D.A. and Dervan,P.B. (1990) J. Am. Chem. Soc. 112, 2435-2437.
12. Ono,A., Chen,C. and Kan,L. (1991) Biochemistry, 30, 9914-9921.
13. McCurdy,S., Moulds,C. and Froehler,B. (1991) Nucleosides Nucleotides, 10, 287-290.
14. Zhou,B.-W., Marchand,C., Asseline,U., Thuong,N.T., Sun,J., Garestier,T. and Hélène,C. (1995) Bioconjugate Chem. 6, 516-523.
15. Griffin,L., KiessIing,L.L., BeaI, PA., Gillespie,P. and Dervan,P.B. (1992) J. Am. Chem. Soc. 114, 7976-7982.
16. Stilz,H. and Dervan,P.B. (1993) Biochemistry, 32, 2177-2185.
17. Huang,C., Cusnman,C.D. and Miller,P.S. (1993) J. Org. Chem. 58, 5048-5049.
18. Kandimalla,E.R., Manning,A.N., Venkataraman,G., Sasisekharan,V. and Agrawal,S. (1995) Nucleic Acids Res. 23, 4510-4517.
19. Durland,R.H., Rao,T.S., Bodepudi,V., Seth,D.M., Jayaraman,K. and Revankar,G.R. (1995) Nucleic Acids Res. 23, 647-653.
20. Marfurt,J., Hunziker,J. and Leumann,C. (1996) Bioorg. Med. Chem. Lett. 6, 3021-3024.
21. Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning - A Laboratory Manual. Cold Spring Harbor Laboratory Press,
22. Chen,G.-Q., Choi,I., Ramachandran,B. and Gouaux,J.E. (1994) J. Am. Chem. Soc. 116, 8799-8800.
23. Priestley,E.S. and Dervan,P.B. (1995) J. Am. Chem. Soc. 117, 4761-4765.
24. Weiner,S.J., Kollman,P.A., Nguyen,D.T. and Case,D. (1986) J. Compt. Chem. 7, 230.
25. Cox,S.R. and Williams,D.E. (1981) J. Compt. Chem. 2, 304.
26. Amott,S. and Selsing,E. (1974) J. Mol. Biol. 88, 509-521.
27. Berendsen,H.J.C., Postma,J.P., van Gunsteren,W.F., DiNola,A. and Haak,J.R. (1984) J. Phys. Chem. 81, 3684.
28. Seela,F. and Winter,H. (1995) Nucleosides Nucleotides, 14, 129-142.
29. Rousseau,R.J., Robins,R.K. and Townsend,L.B. (1968) J. Am. Chem. Soc. 90, 2661-2668.
30. Montgomery J. A. and Thomas,H.J. (1969) J. Org. Chem. 34, 2646-2650.
31. Vorbriiggen,H. and Bennua,B. (1981) Chem. Ber. 114, 1279-1286.
32. Marfurt,J., Stulz,E., Trafelet,H.U., Zingg,A., Leumann,C., Hazenkamp.M., Judd,R., Schenker,S., Strouse,G., Ward,T.R., Fortsch,M, Hauser,J. and Bürgi,H, (1996) Acta Crystallogr., Sect. C., C52, 713-716.
33. Chenon,M.-T., Pugmire,R.J., Grant,D.M., Panzica,R.P. and Townsend,L.B. (1975) J. Am. Chem. Soc. 97, 4636-4642.
34. Bates,P.J., Laughton,C.A., Jenkins,T.C., Capaldi,D.C., Roselt,P.D., Reese,C.D. and Neidle,S. (1996) Nucleic Acids Res. 24, 4176-4184.
35. Koshlap,K.M., Gillespie,P., Dervan,P.B. and Feigon,J. (1993) J. Am. Chem. Soc. 115, 7908-7909.
36. Hunziker,J., Priestley,E.S., Brunar,H. and Dervan,P.B. (1995) J. Am. Chem Soc. 117, 2661-2662.
37. Brunar,H. and Dervan,P.B. (1996) Nucleic Acids Res. 24, 1987-1991.
38. Griffin,L. and Dervan,P.B. (1989) Science, 245, 967-971.