Sequence-independent recombination triple helices: A molecular dynamics study

Journal of Biomolecular Structure and Dynamics

Volumn 15, Issue 2, 1997, Pages 333-345

  Kiran, M Ravi ^a   Bansal, Manju ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CONFORMATIONAL TRANSITION; DNA RECOMBINATION; DNA SEQUENCE; HYDROGEN BOND; MOLECULAR DYNAMICS; PRIORITY JOURNAL; TRIPLE HELIX;

EID: 0030781089     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1997.10508196     Document Type: Article

References (33)

1. Radhakrishnan, I., and Patel, D. J., 1994. Biochemistry, 33:7282
2. Frank-Kamenetskii, M. D., 1995. Ann. Rev. Biochem., 64:65
3. Rao, B. J., Dutreix, M., and Radding, C. M., 1991. Proc. Natl. Acad. Sci. USA., 88:2984
4. Rao, B. J., Chiu, S. K., and Radding, C. M., 1993. J. Mol. Biol., 229:328
5. Chiu, S. K., Rao, B. J., Story, R. M., and Radding, C. M., 1993. Biochemistry, 32:13146
6. Rao, B. J., Chiu, S. K., Bazemore, L. R., Reddy, G., and Radding, C. M., 1995. TIBS, 20:109
7. Kowalczykowski, S. C., 1991. Ann. Rev. Biophys. Biophys. Chem., 20:539
8. Camerini-Otero, R. D., and Hseih, P., 1993. Cell, 73:217
9. Hseih, P., Camerini-Otero, C. S., and Camerini-Otero, R. D., 1992. Proc. Natl. Acad. Sci. USA, 89:6492
10. Umaluf, S. W., Cox, M. M., and Inman, R. B., 1990. J. Biol. Chem., 265:16898
11. Jain, S. K., Cox, M. M., and Inman, R. B., 1995. J. Biol. Chem., 270:4943
12. Adzuma, K., 1992. Genes and Dev., 6:1679
13. Stasiak, A., Stasiak, A. Z., and Koller, T., 1984. Cold Spring Harb. Symp. Quant. Biol., 49:561
14. Egelman, E. H., 1993. Curr. Op. Struct. Biol., 3:189
15. Jain, S. K., Inman, R. B., and Cox, M. M., 1992. J. Biol. Chem., 267:4215
16. Kim, M. G., Zhurkin, V. B., Jernigan, R. L., and Camerini-Otero, R. D., 1995. J. Mol. Biol., 247:874
17. Shchyolkina, A. K., Timofeev, E. N., Borisova, O. F., Il'icheva, I. A., Minyat, E. E., Khomyakova, E. B., and Florentiev, V. L., 1994. FEBS Lett., 339:113
18. Dagneaux, C., Porumb, H., Liquier, J., Takahashi, M., and Taillandier, E. T., 1995. J. Biomol. Struct. Dyn., 13:465
19. Zhurkin, V. B., Raghunathan, G., Ulyanov, N. B., Camerini- Otero, R. D., and Jemigan, R. L., 1994. J. Mol. Biol., 239:181
20. Ravi Kiran, M., and Bansal, M., 1995. J. Biomol. Struct. Dyn., 13:493
21. Ravi Kiran, M., and Bansal, M., 1995. Ind. J. Biochem. Biophys., 32:391
22. Raghunathan, G., Miles, H. T., and Sasisekharan, V., 1993. Biochemistry, 32:455
23. Arnott, S., and Hukins, D. W.L., 1972. Biochem. Biophys. Res. Commun., 47:1504
24. Pearlman, D. A., Case, D. A., Caldwell, J. C., Seibel, G. L., Singh, U. C., Weiner, P. K., and Kollman, P. A., 1991. AMBER 4.0, UCSF
25. Mohanty, D., and Bansal, M., 1993. Nucl. Acids Res., 21:1767
26. Tidor, B., Irikura, K. K., Brooks, B. R., and Karplus, M., 1983. J. Biol. Str. Dyn., 1:231
27. Radhakrishnan, I., and Patel, D. J., 1993. Structure, 1:135
28. Bhattacharyya, D., and Bansal, M., 1990. J. Biomol. Str. Dyn., 8:539
29. Swaminathan, S., Ravishanker, G., and Beveridge, D. L., 1991. J. Am. Chem. Soc., 113:5027
30. Kumar, S. A., Duan, Y., Kollman, P. A., and Rosenberg, J. M., 1994. J. Biomol. Struct. Dyn., 12:487
31. Piriou, J. M., Ketterle, C. h., Gabarro-Arpa, J., Cognet, J. A.H., and Le Bret, M., 1994. Biophys. Chem., 50:323
32. Meervelt, L. V., Vlieghe, D., Dautant, A., Gallois, B., Precigoux, G., and Kennard, O., 1995. Nature, 374:742
33. Spink, N., Nunn, C. M., Vojtechovsky, J., Berman, H. M., and Neidle, S., 1995. Proc. Natl. Acad. Sci. USA, 92:10767