Biodiversity of bradyrhizobia nodulating Lupinus spp.

International Journal of Systematic Bacteriology

Volumn 47, Issue 4, 1997, Pages 1086-1091

  Barrera, L L ^a   Trujillo, M E ^b   Goodfellow, M ^b   Garcia F J ^a   Hernandez Lucas I ^c   Davila G ^a   Van Berkum, P ^d   Martinez Romero E ^c,e  

^a INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

^e Ctro Invest Sobre Fijacion N   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; BACTERIAL ENZYME; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; ISOCITRATE DEHYDROGENASE; PHOSPHOGLUCOMUTASE; RIBOSOME RNA; XANTHINE DEHYDROGENASE;

ARTICLE; BIODIVERSITY; BRADYRHIZOBIUM; CONTROLLED STUDY; ELECTROPHORESIS; NONHUMAN; PLANT; PRIORITY JOURNAL; RNA SEQUENCE;

EID: 0030777377     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-47-4-1086     Document Type: Article

References (59)

1. Bottomley, P. J., H.-H. Cheng, and S. R. Strain. 1994. Genetic structure and symbiotic characteristics of a Bradyrhizobium population recovered from a pasture soil. Appl. Environ. Microbiol. 60:1754-1761.
2. Busmann-Loock, A., M. Dambroth, and U. Menge-Hartmann. 1992. Histological observations on interspecific crosses in the genus Lupinus. Plant Breed. 109:82-85.
3. Chen, W., E. Wang, S. Wang, Y. Li, X. Chen, and Y. Li. 1995. Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China. Int. J. Syst. Bacteriol. 45:153-159.
4. Dupuy, N., A. Willems, B. Pot, D. Dewettinck, I. Vandenbruaene, G. Maestrojuan, B. Dreyfus, K. Kersters, M. D. Collins, and M. Gillis. 1994. Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida. Int. J. Syst. Bacteriol. 44:461-473.
5. Dupuy, N. C., and B. L. Dreyfus. 1992. Bradyrhizobium populations occur in deep soil under the leguminous tree Acacia albida. Appl. Environ. Microbiol. 58:2415-2419.
6. Eardly, B. D., J. P. W. Young, and R. K. Selander. 1992. Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes. Appl. Environ. Microbiol. 58:1809-1815.
7. Eardly, B. D., F.-S. Wang, and P. van Berkum. 1996. Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies. Plant Soil 186:69-72.
8. Eckhardt, M. M., I. L. Baldwin, and E. B. Fred. 1931. Studies of the root nodule organism of lupines. J. Bacteriol. 21:273-285.
9. Eshuis, W., P. G. Kistemaker, and H. L. C. Meuzelaar. 1977. Some numerical aspects of reproducibility and specificity, p. 151-166. In C. E. R. Jones and C. A. Cramers (ed.), Analytical pyrolysis. Elsevier, Amsterdam, The Netherlands.
10. Felsenstein, J. 1993. PHYLIP (phylogenetic inference package), version 3.5c. Department of Genetics, University of Washington, Seattle.
11. Fox, G. E., J. D. Wisotzkey, and P. Jurtshuk, Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166-170.
12. Gao, J. L., J. G. Sun, Y. Li, E. T. Wang, and W. X. Chen. 1994. Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan Province, People's Republic of China. Int. J. Syst. Bacteriol. 44:151-158.
13. Gault, R. R., E. J. Corbin, K. A. Boundy, and J. Brockwell. 1986. Nodulation studies on legumes exotic to Australia: Lupinus and Ornithopus spp. Aust. J. Exp. Agric. 26:37-48.
14. Goodacre, R., and R. C. W. Berkeley. 1990. Detection of small genotypic changes in Escherichia coli by pyrolysis mass spectrometry. FEMS Microbiol. Lett. 71:133-138.
15. Goodacre, R., R. C. W. Berkeley, and J. E. Beringer. 1991. The use of pyrolysis mass spectrometry to detect the fimbrial adhesive antigen F41 from Escherichia coli HB101(pSLM204). J. Anal. Appl. Pyrol. 22:19-28.
16. Goodacre, R., A. Hartmann, J. E. Beringer, and R. C. W. Berkeley. 1991. The use of pyrolysis mass spectrometry in the characterization of Rhizobium meliloti. Lett. Appl. Microbiol. 13:157-160.
17. Goodfellow, M., J. Chun, E. Atalan, and J. J. Sanglier. 1994. Curie-point pyrolysis mass spectrometry and its application to bacterial systematics, p. 87-104. In F. G. Priest, A. Ramos-Cormenzana, and B. Tindall (ed.), Bacterial systematics and diversity. Plenum Press, London, United Kingdom.
18. Goodfellow, M., R. Davenport, F. M. Stainsby, and T. P. Curtis. 1996. Actinomycete diversity associated with foaming in activated sludge plants. J. Ind. Microbiol. 17:268-280.
19. Gutteridge, C. S., L. Vallis, and H. J. H. MacFie. 1985. Numerical methods in the classification of microorganisms by pyrolysis mass spectrometry, p. 369-401. In M. Goodfellow, D. Jones, and F. G. Priest (ed.), Computer-assisted bacterial systematics. Academic Press, London, United Kingdom.
20. Huff, S. M., H. L. C. Meuzelaar, D. L. Pope, and C. R. Kjeldsberg. 1981. Characterization of leukemic and normal white blood cells by Curie point pyrolysis mass spectrometry. 1. Numerical evaluation of the results of a pilot study. J. Anal. Appl. Pyrol. 3:95-110.
21. Jarvis, B. D. W., H. L. Downer, and J. P. W. Young. 1992. Phylogeny of fast-growing soybean-nodulating rhizobia supports synonymy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredii. Int. J. Syst. Bacteriol. 42:93-96.
22. Jarvis, B. D. W., and S. W. Tighe. 1994. Rapid identification of Rhizobium species based on cellular fatty acid analysis. Plant Soil 161:31-41.
23. Jensen, H. L. 1967. Mutual host plant relationships in two groups of legume root nodule bacteria (Rhizobium spp.). Arch. Microbiol. 59:174-179.
24. Jensen, H. L., and A. L. Hansen. 1968. Observations on host plant reactions in root nodule bacteria of the Lotus-Anthyllis and Lupinus-Ornithopus groups. Acta Agric. Scand. 18:135-142.
25. Jordan, D. C. 1982. Transfer of Rhizobium japonicum to Bradyrhizobium gen. nov., a genus of slow-growing, root nodule bacteria from leguminous plants. Int. J. Syst. Bacteriol. 32:136-139.
26. VP, p. 242. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 1. The Williams & Wilkins Co., Baltimore, Md.
27. Kay, H. E., H. L. C. Coutinho, M. Fattori, G. P. Manfio, R. Goodacre, M. P. Nuti, M. Bassaglia, and J. E. Beringer. 1994. The identification of Bradyrhizobium japonicum strains isolated from Italian soils. Microbiology 140:2333-2339.
28. Kündig, C., C. Bec, H. Hennecke, and M. Göttfert. 1995. A single rRNA gene region in Bradyrhizobium japonicum. J. Bacteriol. 177:5151-5154.
29. Kuykendall, L. D., B. Saxena, T. E. Devine, and S. E. Udell. 1992. Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov. Can. J. Microbiol. 38:501-505.
30. Ludwig, W., R. Rossello-Mora, R. Aznar, S. Klugbauer, S. Springs, K. Reetz, C. Beimfohr, E. Brockmann, G. Kirchhof, S. Dorn, M. Bachleitner, N. Klugbauer, N. Springers, D. Lane, R. Nietupsky, M. Weizenegger, and K.-H. Schleifer. 1995. Comparative sequence analysis of 23S rRNA from Proteobacteria. Syst. Appl. Microbiol. 18:164-188.
31. Martínez-Romero, E., and J. Caballero-Mellado. 1996. Rhizobium phylogenies and bacterial genetic diversity. Crit. Rev. Plant Sci. 15:113-140.
32. Moreira, F., M. Gillis, B. Pot, K. Kersters, and A. A. Franco. 1993. Characterization of rhizobia isolated from different divergence groups of tropical Leguminosae by comparative polyacrylamide gel electrophoresis of their total proteins. Syst. Appl. Microbiol. 16:135-146.
33. Oyaizu, H., S. Matsumoto, K. Minamisawa, and T. Gamou. 1993. Distribution of rhizobia in leguminous plants surveyed by phylogenetic identification. J. Gen. Appl. Microbiol. 39:339-354.
34. Pudelko, K., and C. J. Madrzak. 1996. Populations of Rhizobium and Bradyrhizobium nodulating Lupinus in Poland, p. 156. In Abstracts of Biological Fixation of Nitrogen for Ecology and Sustainable Agriculture. 2nd European Nitrogen Fixation Conference and NATO Advanced Research Workshop. Scientific Publishers OWN, Poznan, Poland.
35. Rzedowski, J. 1979. Flora fanerogámica del Valle de Mexico, p. 326-338. Compañia Editorial Continental, S. A., México City, México.
36. Sanglier, J. J., D. Whitehead, G. S. Saddler, E. V. Ferguson, and M. Goodfellow. 1992. Pyrolysis mass spectrometry as a method for the classification, identification and selection of actinomycetes. Gene 115:235-242.
37. Schlinkert-Miller, M., and I. L. Pepper. 1988. Physiological and biochemical characteristics of a fast-growing strain of lupin rhizobia isolated from the Sonoran Desert. Soil Biol. Biochem. 20:319-322.
38. Scholia, M. H., J. A. Moorefield, and G. H. Elkan. 1990. DNA homology between species of rhizobia. Syst. Appl. Microbiol. 13:288-294.
39. Segovia, L., J. P. W. Young, and E. Martínez-Romero. 1993. Reclassification of American Rhizobium leguminosarum bv. phaseoli type I strains as Rhizobium etli sp. nov. Int. J. Syst. Bacteriol. 43:374-377.
40. Selander, R. K., D. A. Caugant, H. Ochman, J. M. Musser, M. N. Gilmour, and T. S. Whittam. 1986. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl. Environ. Microbiol. 51:873-884.
41. Selander, R. K., R. M. McKinney, T. S. Whittam, W. F. Bibb, D. J. Brenner, F. S. Nolte, and P. E. Pattison. 1985. Genetic structure of populations of Legionella pneumophila. 3. Bacteriol. 163:1021-1037.
42. Sneath, P. H. A., and R. R. Sokal. 1973. Numerical taxonomy. W. H. Freeman & Co., San Francisco, Calif.
43. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
44. Sullivan, J. T., B. D. Eardly, P. van Berkum, and C. W. Ronson. 1996. Four unnamed species of nonsymbiotic rhizobia isolated from the rhizosphere of Lotus corniculatus. Appl. Environ. Microbiol. 62:2818-2825.
45. Thies, J. E., B. Ben Bohlool, and P. W. Singleton. 1991. Subgroups of the cowpea miscellany: symbiotic specificity within Bradyrhizobium spp. for Vigna unguiculata, Phaseolus lunatus, Arachis hypogaea, and Macroptilium atropurpureum. Appl. Environ. Microbiol. 57:1540-1545.
46. Thomas, P. M., K. F. Golly, J. W. Zyskind, and R. A. Virginia. 1994. Variation of clonal, mesquite-associated rhizobial and bradyrhizobial populations from surface and deep soils by symbiotic gene region restriction fragment length polymorphism and plasmid profile analysis. Appl. Environ. Microbiol. 60:1146-1153.
47. van Berkum, P. 1990. Evidence for a third uptake hydrogenase phenotype among the soybean bradyrhizobia. Appl. Environ. Microbiol. 56:3835-3841.
48. van Berkum, P., D. Beyene, and B. D. Eardly. 1996. Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.). Int. J. Syst. Bacteriol. 46:240-244.
49. Vanrossum, D., F. P. Schuurmans, M. Gillis, A. Muyotcha, H. W. Vanverseveld, A. H. Stouthamer, and F. C. Boogerd. 1995. Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots. Appl. Environ. Microbiol. 61:1599-1609.
50. Vincent, J. M. 1970. A manual for the practical study of root nodule bacteria. International Biological Programme Handbook no. 15, p. 164. Blackwells Scientific Publications, Ltd., Oxford, United Kingdom.
51. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
52. Willems, A., and M. D. Collins. 1993. Phylogenetic analysis of rhizobia and agrobacteria based on 16S rRNA sequences. Int. J. Syst. Bacteriol. 43:305-313.
53. Windig, W., P. G. Kistemaker, and J. Haverkamp. 1983. Interpretation of a set of pyrolysis mass spectra by discriminant analysis and graphical rotation. Anal. Chem. 55:387-391.
54. Winstanley, T. G., J. T. Magee, D. I. Limb, J. M. Hindmarch, R. C. Spencer, R. A. Whiley, D. Beighton, and J. M. Hardie. 1992. A taxonomic study of the "Streptococcus milleri group" using conventional phenotypic tests and pyrolysis mass spectrometry. J. Med. Microbiol. 36:149-155.
55. Wong, F. Y. K., E. Stackebrandt, J. K. Ladha, D. E. Fleischman, R. A. Date, and J. A. Fuerst. 1994. Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions. Appl. Environ. Microbiol. 60:940-946.
56. Xu, L. M., C. Ge, Z. Cui, J. Li, and H. Fan. 1995. Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans. Int. J. Syst. Bacteriol. 45:706-711.
57. Yanagi, M., and K. Yamasato. 1993. Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol. Lett. 107:115-120.
58. Young, J. P. W., and K. E. Haukka. 1996. Diversity and phylogeny of rhizobia. New Phytol. 133:87-94.
59. Young, J. P. W., H. L. Downer, and B. D. Eardly. 1991. Phylogeny of the phototrophic Rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment. J. Bacteriol. 173:2271-2277.