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note
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Purification of the Sec complex from Saccharomyces cerevisiae cells, reconstitution into proteoliposomes and in vitro translation in the reticulocyte lysate system were as described (8). Binding reaction mixture (5 or 10 μl) contained 50 mM Hepes (pH 7.5), 180 mM potassium acetate, 5 mM magnesium acetate, 2 mM dithiothreitol, 10 to 15% (v/v) glycerol, between 40 and 140 nM Sec complex in proteoliposomes, and 20% (v/v) translation mixture desalted on a NAP-5 column. After incubation at 22°C for 10 min, solubilization with 1% digitonin in 150 mM potassium acetate was on ice in 10 or 20 μl. After dilution to 130 μl under the same conditions, the samples were incubated for 4 min with μl of affinity-purified antibodies to the COOH-terminal 13 amino acids of Sec62p (8) and for 20 min with 15 μl of protein A-Sepharose. The immunoprecipitates were extensively washed with digitonin-containing buffer before analysis by SDS-polyacrylamide gel electrophoresis (SDS-PAGE).
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Finke, K.1
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1842407365
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unpublished data
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K. E. S. Matlack, unpublished data.
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Matlack, K.E.S.1
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20
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1842294156
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note
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Purified Sec complex at ∼150 nM (6 μl) in 50 mM Hepes (pH 7.5), 183 mM potassium acetate, 12% glycerol, 2 mM dithiothreitol, and 0.3% deoxyBig-CHAP (Calbiochem) was incubated on ice with phosphatidylcholine (2.7 mg/ml) and phosphatidylethanolamine (0.7 mg/ml) (Sigma). Buffer (4 μl) was added to introduce potassium acetate to 150 mM magnesium acetate to 5 mM, and digitonin to 0.5% while the lipid and deoxyBigCHAP were being diluted. Precursor (1 μl) was added, and the mixture was incubated at 22°C for 10 min before dilution and immunoprecipitation with antibodies to Sec62p.
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21
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1842326366
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Treatment with N-glycosidase F (∼24 units/ml; Boehringer) was at 0°C for 2 hours. Hot SDS sample buffer was added and samples were analyzed by immunoblotting with antibodies to Sec71p
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Treatment with N-glycosidase F (∼24 units/ml; Boehringer) was at 0°C for 2 hours. Hot SDS sample buffer was added and samples were analyzed by immunoblotting with antibodies to Sec71p.
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22
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1842367476
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note
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Kar2p mutants T249G, G247D, and T59G were generated by in vitro mutagenesis. Wild-type Kar2p and mutant proteins were expressed as histidine tagged proteins in Escherichia coli and purified by immobilized nickel chromatography (8). The expected properties of the mutants were confirmed (19).
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25
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1842337011
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note
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Proteolysis of ppαF:tRNA imported into proteoliposomes containing both the Sec complex and lumenal Kar2p demonstrated that, with the exception of a very short region close to the COOH-terminus, the entire protein was protected. No protected fragments were found in the absence of Kar2p and ATP.
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26
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1842364498
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We thank L. Dreier for graciously providing subcomplexes and advice; L. Hendershot for providing mammalian BiP mutants for preliminary experiments; and W. Mothes, P. Silver, B. Jungnickel, C. Shamu, and V. Siegel for critical reading of the manuscript. K.P. is supported by a grant from the MDC Berlin-Buch (Germany). Supported by NIH grant GM54238-02
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We thank L. Dreier for graciously providing subcomplexes and advice; L. Hendershot for providing mammalian BiP mutants for preliminary experiments; and W. Mothes, P. Silver, B. Jungnickel, C. Shamu, and V. Siegel for critical reading of the manuscript. K.P. is supported by a grant from the MDC Berlin-Buch (Germany). Supported by NIH grant GM54238-02.
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