Molecular cloning of a novel member of semaphorin family genes, semaphorin Z

Molecular Brain Research

Volumn 51, Issue 1-2, 1997, Pages 229-237

  Kikuchi, Kaoru ^a   Ishida, Hiroko ^a   Kimura, Toru ^a  

^a DAINIPPON SUMITOMO PHARMA CO LTD   (Japan)

Author keywords

Axon guidance; Collapsin; Dorsal root ganglia; Innervation; Myotome; Semaphorin; Somite

Indexed keywords

CYSTEINE; MEMBRANE PROTEIN; MESSENGER RNA; NEUROTROPHIC FACTOR; PROLINE; SEMAPHORIN;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN; BRANCHIAL ARCH; DNA LIBRARY; EMBRYO; EMBRYO DEVELOPMENT; FEMALE; GENE EXPRESSION; MOLECULAR CLONING; MULTIGENE FAMILY; MYOTOMY; NEWBORN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; RAT; SEQUENCE HOMOLOGY; SPINAL GANGLION; TISSUE DISTRIBUTION;

AMINO ACID SEQUENCE; ANIMALS; BRAIN; CLONING, MOLECULAR; CONSERVED SEQUENCE; CYSTEINE; DNA, COMPLEMENTARY; EMBRYONIC AND FETAL DEVELOPMENT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE LIBRARY; HUMANS; MEMBRANE GLYCOPROTEINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NERVE GROWTH FACTORS; NERVE TISSUE PROTEINS; OPEN READING FRAMES; PHYLOGENY; RATS; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA;

EID: 0030731785     PISSN: 0169328X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-328X(97)00251-9     Document Type: Article

References (37)

1. Adams R.H., Betz H., Püschel A.W. A novel class of murine semaphorins with homology to thrombospondin is differentially expressed during early embryogenesis. Mech. Dev. 57:1996;33-45.
2. Behar O., Golden J.A., Mashimo H., Schoen F.J., Fishman M.C. Semaphorin III is needed for normal patterning and growth of nerves, bones and heart. Nature. 383:1996;525-528.
3. Block M.D., Debrouwer D. RNA-RNA in situ hybridization using digoxigenin-labeled probes: the use of high-molecular-weight polyvinyl alcohol in the alkaline phosphatase indoxyl-nitroblue tetrazolium reaction. Anal. Biochem. 215:1993;86-89.
4. Cheng T.-C., Wallace M.C., Merlie J.P., Olson E.N. Separable regulatory elements governing myogenin transcription in mouse embryogenesis. Science. 261:1993;215-218.
5. Faerman A., Goldhamer D.J., Puzis R., Emerson C.P. Jr., Shani M. The distal human myoD enhancer sequences direct unique muscle-specific patterns of lacZ expression during mouse development. Dev. Biol. 171:1995;27-38.
6. Furuyama T., Inagaki S., Kosugi A., Noda S., Saitoh S., Ogata M., Iwahashi Y., Miyazaki N., Hamaoka T., Tohyama M. Identification of a novel transmembrane semaphorin expressed on lymphocytes. J. Biol. Chem. 271:1996;33376-33381.
7. C.S. Goodman, C.J. Shatz, Developmental mechanisms that generate precise patterns of neuronal connectivity, Cell 72/Neuron 10 (Suppl.) (1993) 77-98.
8. Hall K.T., Boumsell L., Schultze J.L., Boussiotis V.A., Dorfman D.M., Cardoso A.A., Bensussan A., Nadler L.M., Freeman G.J. Human CD100, a novel leukocyte semaphorin that promotes B-cell aggregation and differentiation. Proc. Natl. Acad. Sci. USA. 93:1996;11780-11785.
9. E. Harlow, D. Lane, Antibodies: a Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1988.
10. Higgins D.J., Thompson J.D., Gibson T.J. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266:1996;383-402.
11. Inagaki S., Furuyama T., Iwahashi Y. Identification of a member of mouse semaphorin family. FEBS Lett. 370:1995;269-272.
12. N. Jacobson, Developmental Neurobiology, 3rd edn., Plenum Press, New York, 1991, pp. 359-400.
13. Keynes R., Cook G.M.W. Axon guidance molecules. Cell. 83:1995;161-169.
14. Klein P., Kanehisa M., DeLisi C. The detection and classification of membrane-spanning proteins. Biochem. Biophys. Acta. 815:1985;468-476.
15. Kolodkin A.L., Matthes D.J., O'Connor T.P., Patel N.H., Admon A., Bentley D., Goodman C.S. Fasciclin IV: sequence, expression, and function during growth cone guidance in the grasshopper embryo. Neuron. 9:1992;831-845.
16. Kolodkin A.L., Matthes D.J., Goodman C.S. The semaphorin genes encode a family of transmembrane and secreted growth cone guidance molecules. Cell. 75:1993;1389-1399.
17. Kozak M. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:1987;8125-8148.
18. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132.
19. Luo Y., Raible D., Raper J.A. Collapsin: a protein in brain that induces the collapse and paralysis of neuronal growth cones. Cell. 75:1993;217-227.
20. Luo Y., Shepherd I., Li J., Renzi M.J., Chang S., Raper J.A. A family of molecules related to collapsin in the embryonic chick nervous system. Neuron. 14:1995;1131-1140.
21. MacGeoch D.J. On the predictive recognition of signal peptide sequences. Virus Res. 3:1985;271-286.
22. Matthes D.J., Sink H., Kolodkin A.L., Goodman C.S. Semaphorin II can function as a selective inhibitor of specific synaptic arborizations. Cell. 81:1995;631-639.
23. McConnell S.K. The generation of neuronal diversity in the central nervous system. Annu. Rev. Neurosci. 14:1991;269-300.
24. Messersmith E.K., Leonardo E.D., Shatz C.J., Tessier-Lavigne M., Goodman C.S., Kolodkin A.L. Semaphorin III can function as a selective chemorepellent to pattern sensory projections in the spinal cord. Neuron. 14:1995;949-959.
25. Page R.D.M. TreeView: an application to display phylogenetic trees on personal computers. CABIOS. 12:1996;357-358.
26. Pawson T. Protein modules and signalling networks. Science. 373:1995;573-580.
27. Püschel A.W., Adams R.H., Betz H. Murine Semaphorin D/collapsin is a member of a diverse gene family and creates domains inhibitory for axonal extension. Neuron. 14:1995;941-948.
28. Püschel A.W., Adams R.H., Betz H. The sensory innervation of the mouse spinal cord may be patterned by differential expression of and differential responsiveness to semaphorins. Mol. Cell. Neurosci. 7:1996;419-431.
29. Riddle R.D., Johnson R.L., Laufer E., Tabin C. Sonic hedgehog mediates the polarizing activity of the ZPA. Cell. 75:1993;1401-1416.
30. J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
31. Sekido Y., Bader S., Latif F., Chen J.-Y., Duh F.-M., Wei M.-H., Albanesi J.P., Lee C.-C., Lerman M.I., Minna J.D. Human semaphorins A (V) and IV reside in the 3p21.3 small cell lung cancer deletion region and demonstrate distinct expression pattern. Proc. Natl. Acad. Sci. USA. 93:1996;4120-4125.
32. Shepherd I., Luo Y., Raper J.A., Chang S. The distribution of collapsin-1 mRNA in the developing chick nervous system. Dev. Biol. 173:1996;185-199.
33. Tessir-Lavigne M., Goodman C.S. The molecular biology of axon guidance. Science. 274:1996;1123-1133.
34. Von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 14:1986;4683-4690.
35. Wilkinson D.G., Nieto M.A. Detection of messenger RNA by in situ hybridization to tissue sections and whole mount. Methods Enzymol. 225:1993;361-373.
36. Wright D.E., White F.A., Gerfen R.W., Silos-Santiago I., Snider W.D. The guidance molecule semaphorin III is expressed in regions of spinal cord and periphery avoided by growing sensory axons. J. Comp. Neurol. 361:1995;321-333.
37. Xiang R.-H., Hensel C.H., Garcia D.K., Carlson H.C., Kok K., Daly M.C., Kerbarcher K., Van den Berg A., Veldhuis P., Buys C.H.C.M., Naylor S.L. Isolation of the human semaphorin III/F gene (SEMA3F) at chromosome 3p21, a region deleted in lung cancer. Genomics. 32:1996;39-48.