Search for rigid sub domains in dna from molecular dynamics simulations

Journal of Biomolecular Structure and Dynamics

Volumn 15, Issue 2, 1997, Pages 357-367

  Gaudin, F ^a   Lancelot, G ^a   Genest, D ^a  

^a CENTRE DE BIOPHYSIQUE MOLÉCULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; DNA; OLIGONUCLEOTIDE;

ARTICLE; COMPUTER SIMULATION; MACROMOLECULE; MOLECULAR DYNAMICS; PRIORITY JOURNAL;

EID: 0030729494     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1997.10508198     Document Type: Article

References (21)

1. M; Levy, R., Kaiplus, M., and McCammon, J. A., 1981. J. Am. Chem. Soc., 103:994–996.
2. McCammon, J. A., and Harvey, S. C., 1987. Dynamics of proteins and Nucleic acids Cambridge University Press, Cambridge
3. van Gunsteren, W. F., Weiner, P. K., and Wikilson, A. J., 1993. Computer Simulation of Biomolecular sys tems. Theoretical and Experimental applications ESCOM, Leiden
4. Brooks, C. L., Karplus, M., and Pettit, B. M., 1988. Proteins:A Theoretical Perspective of Dynamics Structure and Thermodynamics Wiley, New York
5. Head-Gordon, T., and Brooks, C. L., 1991. Biopolymers, 31:77–100.
6. Perico, A., Guenza, M., Mormino, M., and Fioravanti, R., 1995. Biopolymers, 35:47–54.
7. Briki, F., and Genest, D., 1995. J. Biomol. Struct. Dynam., 12:1063–1082.
8. Genest, D., 1996. Biopolymers, 38:389–399.
9. Furois-Corbin, S., Smith, J. C., and Kneller, G. R., 1993. Proteins:Structure, function and Genetics, 16:141–154.
10. Kneller, G. R., and Smith, J. C., 1994. J. Mol. Biol., 242:181–186.
11. Nichols, W. L., Rose, G. D., Ten Eycck, L. F., and Zimm, B. H., 1995. Proteins:Structure, function and Genetics, 48:23–38.
12. van Gunsteren, W. F., and Berendsen, H. J.C., 1986. GROMOS87 Package, Biomos Biomolecular Software, University of Groningen
13. Briki, F., and Genest, D., 1994. J. Biomol. Struct. Dynam., 11:43–56.
14. Gaudin, F., Genest, D., and Lancelot, G., Eur. Biophys. J., in press
15. Brünger, A. T., 1992. X-PLOR, Version 3.0 New Haven CT:Yale University.
16. Flory, P. J., 1969. Statistical Mechanics of Chain Molecules 13J. Wiley.
17. Ding, H. Q., Karasawa, N., and Goddard, W. A., III. 1992. J. Chem. Phys., 97:4309–4315.
18. Lee, F. S., and Warshel, A., 1992. J. Chem. Phys., 97:3100–3107.
19. Tuckerman, M., Berne, B. J., and Martyna, G. J., 1992. J. Chem. Phys., 97:1990–2001.
20. Watanabe, M., and Karplus, M., 1993. J. Chem. Phys., 99:8063–8074.
21. Mathiowetz, A. M., Jain, A., Karasawa, N., and Goddard, W. A., III. 1994. PROTEINS:Structure, function and Genetics, 20:227–247.