Purification, characterization and gene sequence analysis of a novel cytochrome c co-induced with reductive dechlorination activity in Desulfomonile tiedjei DCB-1

Archives of Microbiology

Volumn 168, Issue 6, 1997, Pages 520-527

  Louie, Tai Man ^a   Ni, Shuisong ^b   Xun, Luying ^b,c   Mohn, William W ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^c WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Cytochrome c; Desulfomonile tiedjei DCB 1; Electron transport; Halorespiration; Reductive dechlorination

Indexed keywords

CYTOCHROME C;

AMINO ACID SEQUENCE; ARTICLE; DECHLORINATION; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME ANALYSIS; GENE INDUCTION; GENE SEQUENCE; GENETIC ANALYSIS; GRAM NEGATIVE BACTERIUM; MOLECULAR WEIGHT; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN EXPRESSION;

AMINO ACID SEQUENCE; BACTERIAL OUTER MEMBRANE PROTEINS; BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; CYTOCHROME C GROUP; ENZYME INDUCTION; GENES, BACTERIAL; GRAM-NEGATIVE ANAEROBIC BACTERIA; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); DESULFOMONILE TIEDJEI; NEGIBACTERIA;

EID: 0030729081     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002030050530     Document Type: Article

References (40)

1. 4 from the bacterium Azotobacter vinelandii. Biochem J 222:217-227
2. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1992) Short protocols in molecular biology, 2nd edn. Greene Publishing Associates Wiley, New York
3. Bartsch RG, Kamen MD (1960) Isolation and properties of two soluble heme proteins in extracts of the photoanaerobe Chromatium. J Biol Chem 235:825-831
4. 3 from Desulfovibrio vulgaris Miyazaki. Eur J Biochem 182:51-55
5. Cassidy HC (1949) Electron exchange-polymers. J Am Chem Soc 71:402-410
6. DeWeerd KA, Suflita JM (1990) Anaerobic aryl reductive dehalogenation of halobenzoates by cell extracts of "Desulfomonile tiedjei". Appl Environ Microbiol 56:2999-3005
7. DeWeerd KA, Mandelco L, Tanner RS, Woese CR, Suflita JM (1990) Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium. Arch Microbiol 154:23-30
8. DeWeerd KA, Concannon F, Suflita JM (1991) Relationship between hydrogen consumption, dehalogenation, and the reduction of sulfur oxyanions by Desulfomonile tiedjei. Appl Environ Microbiol 57:1929-1934
9. Dolfing J (1990) Reductive dechlorination of 3-chlorobenzoate is coupled to ATP production and growth in an anaerobic bacterium, strain DCB-1. Arch Microbiol 153:264-266
10. Dolfing J, Harrison BK (1992) Gibbs free energy of formation of halogenated aromatic compounds and their potential role as electron acceptors in anaerobic environments. Environ Sci Technol 26:2213-2218
11. Dutton PL (1978) Redox potentiometry: determination of midpoint potentials of oxidation-reduction components of biological electron-transfer systems. Methods Enzymol 54:411-435
12. Francis RT Jr, Becker RR (1984) Specific indication of hemoproteins in polyacrylamide gels using a double-staining process. Anal Biochem 136:509-514
13. Gerritse J, Renard V, Pedro Gomes TM, Lawson PA, Collins MD, Gottschal JC (1996) Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols. Arch Microbiol 165:132-140
14. Holliger C, Schraa G (1994) Physiological meaning and potential for application of reductive dechlorination by anaerobic bacteria. FEMS Microbiol Rev 15:297-305
15. Holliger C, Schumacher W (1994) Reductive dehalogenation as a respiratory process. Antonie Van Leeuwenhoek 66:239-246
16. Imai Y, Imai K, Sato R, Horio T (1969) Three spectrally different states of cytochrome cc′ and c′ and their interconversion. J Biochem 65:225-237
17. Kristensen EW, Igo DH, Elder RC, Heineman WR (1991) Non-ideal behavior of Nernstian plots from spectroelectrochemistry experiments. J Electroanal Chem 309:61-72
18. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685
19. 4. Biochim Biophys Acta 808:213-218
20. Linkfield TG, Tiedje JM (1990) Characterization of the requirements and substrates for reductive dehalogenation by strain DCB-1. J Ind Microbiol 5:9-16
21. Mohn WW, Kennedy KJ (1992) Reductive dehalogenation of chlorophenols by Desulfomonile tiedjei DCB-1. Appl Environ Microbiol 58:1367-1370
22. Mohn WW, Tiedje JM (1990a) Strain DCB-1 conserves energy for growth from reductive dechlorination coupled to formate oxidation. Arch Microbiol 153:267-271
23. Mohn WW, Tiedje JM (1990b) Catabolic thiosulfate disproportionation and carbon dioxide reduction in strain DCB-1, a reductively dechlorinating anaerobe. J Bacteriol 172:2065-2070
24. Mohn WW, Tiedje JM (1991) Evidence for chemiosmotic coupling of reductive dechlorination and ATP synthesis in Desulfomonile tiedjei. Arch Microbiol 157:1-6
25. Mohn WW, Tiedje JM (1992) Microbial reductive dehalogenation. Microbiol Rev 56:482-507
26. Monkara F, Bingham SJ, Kadir FHA, McEwan AG, Thomson AJ, Thurgood AGP, Moore GR (1992) Spectroscopic studies of Rhodobacter capsulatus cytochrome c′ in the isolated state and in intact cells. Biochim Biophys Acta 1100:184-188
27. Moore GR, Pettigrew GW (1990) Cytochromes c: evolutionary, structural and physiochemical aspects. Springer, Berlin Heidelberg New York
28. Müller F (1983) The flavin redox-system and its biological function. Top Curr Chem 108:71-107
29. Ni S, Fredrickson JK, Xun L (1995) Purification and characterization of a novel 3-chlorobenzoate-reductive dehalogenase from the cytoplasmic membrane of Desulfomonile tiedjei DCB-1. J Bacteriol 177:5135-5139
30. Niki K, Kawasaki Y, Nishimura N, Higuchi Y, Yasuoka N, Kakudo M (1984) Electrochemical and structural studies of tetraheme proteins from Desulfovibrio - standard potentials of the redox sites and heme-heme interactions. J Electroanal Chem 168:275-286
31. Sanford RA, Cole JR, Löffler FE, Tiedje JM (1996) Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to reductive dechlorination of 3-chloro-4-hydroxybenzoate. Appl Environ Microbiol 62:3800-3808
32. 3. Eur J Biochem 141:283-296
33. Saraiva LM, Besson S, Moura I, Fauque G (1995) Purification and preliminary characterization of three c-type cytochromes from Pseudomonas nautica strain 617. Biochem Biophys Res Commun 212:1088-1097
34. Scholz-Muramatsu H, Neumann A, Meßmer M, Moore E, Dickert G (1995) Isolation and characterization of Dehalospirillum multivorans gen. nov., sp. nov., a tetrachloroethene-utilizing, strictly anaerobic bacterium. Arch Microbiol 163:48-56
35. Shelton DR, Tiedje JM (1984) Isolation and partial characterization of bacteria in an anaerobic consortium that mineralizes 3-chlorobenzoic acid. Appl Environ Microbiol 48:840-848
36. Smith PK, Krohn RI, Hermanson GT, Mallia AK, Gartner FH, Provenzano MD, Fujimoto EK, Goeke NM, Olson BJ, Klenk DC (1985) Measurement of protein using bicinchoninic acid. Anal Biochem 150:76-85
37. Utkin I, Woese C, Wiegel J (1994) Isolation and characterization of Desulfitobacterium dehalgenans gen. nov., sp. nov., an anaerobic bacterium which reductively dechlorinates chlorophenolic compounds. Int J Syst Bacteriol 44:612-619
38. Wolin EA, Wolin MJ, Wolfe RS (1963) Formation of methane by bacterial extracts. J Biol Chem 238:2882-2886
39. Yamanaka T, Imai S (1972) A cytochrome cc-like haemoprotein isolated from Azotobacter vinelandii. Biochem Biophys Res Commun 46:150-154
40. You Y, Elmore S, Colton LL, Mackenzie C, Stoops JK, Weinstock GM, Norris SJ (1996) Characterization of the cytoplasmic filament protein gene (cfpA) of Treponema pallidum subsp. pallidum. J Bacteriol 178:3177-3187