A novel cytochrome b(o/a)3-type oxidase from Bacillus stearothermophilus catalyzes cytochrome c-551 oxidation

Journal of Biochemistry

Volumn 122, Issue 4, 1997, Pages 764-771

  Sakamoto, Junshi ^a   Handa, Yoshimi ^a   Sone, Nobuhito ^a  

^a KYUSHU INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

ba3 type cytochrome c oxidase; Bacillus stearothermophilus; bo3 type oxidase; Cytochrome c 551; Thermophilic bacteria

Indexed keywords

COPPER; CYTOCHROME B; CYTOCHROME C; CYTOCHROME C OXIDASE; HEME DERIVATIVE; OXIDOREDUCTASE;

ARTICLE; CATALYSIS; ENZYME SUBUNIT; GEOBACILLUS STEAROTHERMOPHILUS; MOLECULAR WEIGHT; MUTANT; NONHUMAN; OXIDATION; RESPIRATORY CHAIN; THERMOPHILIC BACTERIUM;

ARCHAEA; BACTERIA (MICROORGANISMS); EQUIDAE; GEOBACILLUS STEAROTHERMOPHILUS; POSIBACTERIA; SULFOLOBUS; THERMUS; THERMUS THERMOPHILUS;

EID: 0030724376     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a021821     Document Type: Article

References (46)

1. 3-type terminal oxidase of a thermophilic bacterium: purification, properties and proton pumping. Biochim. Biophys. Acta 682, 216-22
2. Sone, N. (1990) Respiration-driven proton pumps in The Bacteria (Krulwich, T.A., ed.) Vol. 12, pp. 1-32, Academic Press, New York
3. 3-type oxidase of Bacillus stearothermophilus K1041 and non-Michaelis-type kinetics with cytochrome c. Biochim. Biophys. Acta 1273, 129-138
4. Gárcia-Horsman, J.A., Barquera, B., Rumbley, J., Ma, J., and Gennis, R.B. (1994) The superfamily of heme-copper respiratory oxidase. J. Bacteriol. 176, 5587-5600
5. Van der Oost, J., de Boer, A.P.N., de Gier, J.-W.L., Zumft, W.G., Stouthamer, A.H., and van Spanning, R.J.M. (1994) The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase. FEMS Microbiol. Lett. 121, 1-10
6. Ishizuka, M., Machida, K., Shimada, S., Mogi, A., Tsuchiya, T., Ohmori, T., Souma, Y., Gonda, M., and Sone, N. (1990) Nucleotide sequences of the genes coding for four subunits of cytochrome c oxidase from the thermophilic bacterium PS3. J. Biochem. 108, 866-873
7. 1 complex and cytochrome oxidase in the thermophilic bacterium PS3. J. Biol. Chem. 262, 15386-15391
8. Nicholls, P. and Sone, N. (1984) Kinetics of cytochrome c and TMPD oxidation by cytochrome c oxidase from the thermophilic bacterium PS3. Biochim. Biophys. Acta 767, 240-247
9. 3 terminal oxidase of Bacillus stearothermophilus. Transient spectroscopy of electron transfer and ligand binding. J. Biol. Chem. 271, 13987-13992
10. Sone, N., Kutoh, E., and Yanagita, Y. (1989) Cytochrome c-551 from the thermophilic bacterium PS3 grown under air-limited conditions. Biochim. Biophys. Acta 977, 329 334
11. Noguchi, S., Yamazaki, T., Yaginuma, A., Sakamoto, J., and Sone, N. (1994) Over-expression of membrane-bound cytochrome c-551 from thermophilic Bacillus PS3 in Bacillus stearothermophilus K1041. Biochim. Biophys. Acta 1188, 302-310
12. Sone, N., Kutoh, E., and Sato, K. (1990) A cytochrome o-type oxidase of the thermophilic bacterium PS3 grown under air-limited conditions. J. Biochem. 107, 597-602
13. Sone, N. and Fujiwara, Y. (1991) Effects of aeration during growth of Bacillus stearothermophilus on proton pumping activity and change of terminal oxidases. J. Biochem. 110, 1016-1021
14. 3 -type cytochrome c oxidase. FEMS Microbiol. Lett. 143, 151-158
15. Miller, M.J. and Gennis, R.B. (1983) The purification and characterization of the cytochrome d terminal oxidase complex of the Escherichia coli aerobic respiratory chain. J. Biol. Chem. 258, 9159-9165
16. 558-d complex from cells grown with limited oxygen and evidence of branched electron-carrying systems. J. Biol. Chem. 259, 3375-3381
17. Kolonay, Jr., J.F., Moshiri, F., Gennis, R.B., Kaysser, T.M., and Maier, R.J. (1994) Purification and characterization of the cytochrome bd complex from Azotobacter vinelandii: comparison to the complex from Escherichia coli. J. Bacteriol. 176, 4177-4181
18. 3: A second terminal oxidase from the extreme thermophile Thermus thermophilus. Proc. Natl. Acad. Sci. USA 85, 5779-5783
19. 3 from Thermus thermophillus HB8. J. Biol. Chem. 270, 20345-20358
20. Castresana, J. and Saraste, M. (1995) Evolution of energetic metabolism: The respiration-early hypothesis. Trends Biochem. Sci. 20, 443-448
21. Castresana, J., Lübben, M., Saraste, M., and Higgins, D.G. (1994) Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO J. 13, 2516-2525
22. Lübben, M., Warne, A., Albracht, S.P.J., and Saraste, M. (1994) The purified SoxABCD quinol oxidase complex of Sulfolobus acidocaldarius contains a novel haem. Mol. Microbiol. 13, 327-335
23. Lübben, M., Kolmerer, B., and Saraste, M. (1992) An archaebacterial terminal oxidase combines core structures of two mitochondrial respiratory complexes. EMBO J. 11, 805-812
24. Sone, N. (1986) Cytochrome oxidase from thermophilic bacterium PS3. Methods Enzymol. 126, 145-152
25. Berry, E.A. and Trumpower, B.L. (1987) Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra. Anal. Biochem. 161, 1-15
26. Lowry, O.H., Rosebrough, N.J., Farr, A.L., and Randall, R.J. (1951) Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193, 265-275
27. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685
28. Reid, G.A. and Ingledew, W.J. (1980) The purification of a respiratory oxidase complex from Escherichia coli. FEBS Lett. 109, 1-4
29. Hedrick, J.L. and Smith, A.J. (1968) Size and charge isomer separation and estimation of molecular weights of proteins by disc gel electrophoresis. Arch. Biochem. Biophys. 126, 155-164
30. Towbin, H., Staehelin, T., and Gordon, J. (1979) Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications. Proc. Natl. Acad. Sci. USA 76, 4350-4354
31. Ikeuchi, M. and Inoue, Y. (1988) A new photosystem II reaction center component (4.8 kDa protein) encoded by chloroplast genome. FEBS Lett. 241, 99-104
32. Kuge, S., Noguchi, S., Sakamoto, J., and Sone, N. (1996) Identification of peptide fragments chemically cross-linked in cytochrome c oxidase from thermophilic Bacillus PS3. Biochem Mol. Biol. Int. 38, 181-188
33. Yamanaka, T. (1992) The Biochemistry of Bacterial Cytochromes, pp. 6-10, Japan Scientific Societies Press, Tokyo
34. Tanaka, T., Inoue, M., Sakamoto, J., and Sone, N. (1996) Intra- and inter-complex cross-linking of subunits in the quinol oxidase super-complex from thermophilic Bacillus PS3. J. Biochem. 119, 482-486
35. Sone, N. and Fujiwara, Y. (1991) Haem O can replace haem A in the active site of cytochrome c oxidase from thermophilic bacterium PS3. FEBS Lett. 288, 154-158
36. Sakajo, S., Minagawa, N., Komiyama, T., and Yoshimoto, A. (1990) Characterization of cyanide-resistant respiration and appearance of a 36 kDa protein in mitochondria isolated from antimycin A-treated Hansenula anomala. J. Biochem. 108, 166-168
37. Sato-Watanabe, M., Mogi, T., Miyoshi, H., Iwamura, H., Matsushita, K., Adachi, O., and Anraku, Y. (1994) Structure-function studies on the ubiquinol oxidation site of the cytochrome bo complex from Escherichia coli using p-benzoquinones and substituted phenols. J. Biol. Chem. 269, 28899-28907
38. Sato-Watanabe, M., Mogi, T., Ogura, T., Kitagawa, T., Miyoshi, H., Iwamura, H., and Anraku, Y. (1994) Identification of a novel quinone-binding site in the cytochrome bo complex from Escherichia coli. J. Biol. Chem. 269, 28908-28912
39. 1 and cytochrome o, of Acetobacter aceti. J. Biol. Chem. 267, 24748-24753
40. Peschek, G.A., Wastyn, M., Fromwald, S., and Mayer, B. (1995) Occurrence of heme O in photoheterotrophically growing, semianaerobic cyanobacterium Synechocystis sp. PCC6803. FEBS Lett. 371,89-93
41. Peschek, G.A., Alge, D., Fromwald, S., and Mayer, B. (1995) Transient accumulation of heme O (cytochrome o) in the cyto plasmic membrane of semi-anaerobic Anacystis nidulans. Evidence for oxygenase-catalyzed heme 0/A transformation. J. Biol. Chem. 270, 27937-27941
42. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376, 660-669
43. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science 272, 1136-1144
44. A domain: identification of substrate-binding residues in cytochrome c oxidase. Biochemistry 34, 5824-5830
45. Purschke, W.G., Schmidt, C.L., Petersen, A., and Schäfer, G. (1997) The terminal quinol oxidase of the hyperthermophilic archaeon Acidianus ambivalens exhibits a novel subunit structure and gene organization. J. Bacterial. 179, 1344 1353
46. 37. Biochemistry 36, 4471 4479