DQ microsatellite association studies in three ethnic groups

Tissue Antigens

Volumn 50, Issue 5, 1997, Pages 507-520

  Lin, L ^a,e   Jin, L ^b   Kimura, A ^c   Carrington, M ^d   Mignot, E ^a,e  

^a STANFORD UNIVERSITY MEDICAL CENTER   (United States)

^b UNIVERSITY OF TEXAS   (United States)

^c TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

^d SAIC FREDERICK INC   (United States)

^e Center for Narcolepsy   (United States)

Author keywords

DQA1; DQB1; DQCAR; DQCARII; G51152; HLA; Microsatellite marker; Mutation rate; Recombination

Indexed keywords

HLA DQ ANTIGEN; HLA DR ANTIGEN; MICROSATELLITE DNA;

ABORIGINE; ARTICLE; ASIAN; CAUCASIAN; CONTROLLED STUDY; DNA POLYMORPHISM; GENE LINKAGE DISEQUILIBRIUM; GENE MUTATION; HAPLOTYPE; HLA TYPING; HUMAN; HUMAN CELL; NORMAL HUMAN; PRIORITY JOURNAL;

EID: 0030716297     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.1997.tb02907.x     Document Type: Article

References (44)

1. Sollid LM, Thorsby E. HLA susceptibility genes in celiac disease: genetic mapping and role in pathogenesis. Gastroenterology 1993: 105: 910-22 and 1994: 106: 1133.
2. Sollid LM, Thorsby E. HLA susceptibility genes in celiac disease: genetic mapping and role in pathogenesis. Gastroenterology 1993: 105: 910-22 and 1994: 106: 1133.
3. Mignot E, Kimura A, Latternamm A et al. Extensive HLA class II studies in 58 non DRB1*15(DR2) narcoleptic patients with cataplexy maps susceptibility to the coding region of DQA1*0102 and DQB1*0602 gene. Tissue Antigens 1997: 49: 329-41.
4. Yasunaga S, Kimura A, Hamaguchi K, Rønningen KS, Sasazuki T. Different contribution of HLA-DR and -DQ genes in susceptibility and resistance to insulin-dependent diabetes mellitus (IDDM). Tissue Antigens 1996: 47: 37-48.
5. n polymorphisms. Genomics 1990: 7: 524-30.
6. Dib C, Faure S, Fizames C et al. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 1996: 380: 152-4.
7. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 1994: 31: 368(6470): 455-7.
8. Weber J, Wong C. Mutation of short tandem repeats. Hum Mol Genet 1993: 8: 1123-8.
9. Peterson AC, Di Rienzo A, Lehesjoki AE, de la Chapelle A, Slatkin M, Freimer NB. The distribution of linkage disequilibrium over anonymous genome regions. Hum Mol Genet 1995: 4: 887-94.
10. Zhong N, Kajanoja E, Smits B et al. Fragile X founder effects and new mutations in Finland. Am J Med Genet 1996: 64: 226-33.
11. Morral N, Nunes V, Casals T et al. Microsatellite haplotypes for cystic fibrosis: mutation frameworks and evolutionary tracers. Hum Mol Genet 1993: 2: 1015-22.
12. Hastbacka J, de la Chapelle A, Kaitila I, Sistonene P, Weaver A, Lander ES. Linkage disequilibrium mapping in isolated founder populations: dystrophic dysplasia in Finland. Nature Genet 1992: 2: 204-11.
13. Goddard AB, Chang EY, Oshina J et al. Toward localization of the Warner syndrome gene by linkage disequilibrium and ancestral haplotyping: lessons learned from analysis of 35 chromosome 8p11.1-21.1 markers. Am J Hum Genet 1996: 58: 1286-302.
14. Sulisalo T, Klockars J, Makitie O et al. High-resolution linkage disequilibrium mapping of the cartilage-hair hypoplasia gene. Am J Hum Genet 1994: 55: 937-45.
15. n microsatellite located in the HLA-DQA1/DQB1 class II region. Hum Immunol 1995: 42(3): 209-20.
16. Mignot E, Kimura A, Abbal M et al. DQCAR microsatellite polymorphisms in three selected HLA class II-associated disease. Tissue Antigens 1995: 46: 299-304.
17. Jin L, Macaubas C, Hallmeyer J, Kimura A, Mignot E. Mutation rate varies among alleles at a microsatellite locus: Phylogenetic evidence. Proc Natl Acad Sci U S A 1996: 93: 15285-88.
18. Mignot E, Macaubas C, Jin L, Hallmeyer J, Kimura A, Grumet FC. The natural history of a microsatellite located in the HLA DQ region. In: Charron D. ed. Genetic diversity of HLA: functional and medical implications. volume II. Proceedings of the Twelfth International Histocompatibility Workshop and Conference. Paris: EDK publishers (in press).
19. Macaubas C, Jin L, Hallmayer J, Kimura A, Mignot E. The complex mutation pattern of a microsatellite. Genomics (in press).
20. Cullen M, Noble J, Erlich H et al. Characterization of recombination in the HLA class II region. Am J Hum Genet 1997: 6: 397-407.
21. Foissac A, Crouau-Roy B, Fauré S, Thomsen M, Cambon-Thomsen A. Microsatellites in the HLA region: an overview. Tissue Antigens 1997: 49: 197-214.
22. Yang SY, Milford E, Hammerling U, Dupont B. Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system: the B-cell line panel designed for the tenth international histocompatibility workshop. In Dupont B, ed. Immunobiology of HLA. Vol. I, 1987. New York: Springer Verlag, 1989: 11-9.
23. Kimura A, Dong R, Harada H, Sasazuki T. DNA typing of HLA class II genes in B-lymphoblastic cell lines homozygous for HLA. Tissue Antigens 1992: 40: 5-12.
24. Bannai M, Tokunaga K, Lin L et al. Discrimination of human HLA-DRB1 alleles by PCR-SSCP (single-strand conformation polymorphism) method. Eur J Immunogenet 1994: 21: 1-9.
25. Bannai M.,Tokunaga K Imanishi T et al. HLA class II alleles in Ainu living in Hidaka district, Hokkaido. Am J Phys Anthropol 1996: 101: 1-9.
26. Falconer DS. Introduction to quantitative genetics. New York: Longman Scientific and Technical, 1989.
27. Imanishi T, Akaza T, Kimura A, Tokunaga K, Gojobori T. Allele and haplotype frequencies for HLA and complement loci in various ethnic groups. In Tsuji K, Aizawa M, Sasazuki T ed. HLA 1991: Proceedings of the Eleventh International Histocompatibility Workshop and Conference. Vol. I. New York: Oxford University Press, 1992: 1065-220.
28. n polymorphisms in the human dystrophin gene and their implications in carrier detection and prenatal diagnosis in Duchenne and Becker muscular dystrophies. Genomics 1994: 21: 567-70.
29. Haas J, Kimura A, Andreas A et al. Polymorphism in the upstream regulatory region of DQA1 genes and DRB1, QAP, DQA1, and DQB1 haplotypes in the German population. Hum Immunol 1994: 39: 31-40.
30. Kwok WW, Kovats S, Thutle P, Nepon GT. HLA-DQ allelic polymorphisms constrain patterns of class II heterodimer formation. J Immunol 1993: 150: 2263-72.
31. Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB. Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci U S A 1994: 91: 3166-70.
32. n polymorphisms in world populations. Am J Hum Genet 1995: 56: 461-74.
33. Rubinsztein DC, Amos W, Leggo J et al. Mutational bias provides a model for the evolution of Huntington's disease and predicts a general increase in disease prevalence. Nature Genet 1994: 7: 525-30.
34. Willems PJ. Dynamic mutations hit double figures. Nature Genet 1994: 8: 213-5.
35. Jeffreys AJ, Tamaki K, MacLeod A, Monckton DG, Neil DL, Armour JA. Complex gene conversion events in germline mutation at human minisatellites. Nature Genet 1994: 6: 136-45.
36. Rubinsztein DC, Amos W, Leggo J et al. Microsatellite evolution-evidence for directionality and variation in rate between species. Nature Genet 1995: 10: 337-43.
37. Banchs I, Biscg Am Guimera J, Lazaro C, Puig A, Estivill X. New alleles at microsatellite loci in CEPH families mainly arise from somatic mutations in the lymphoblastoid cell lines. Hum Mutat 1994: 3: 365-72.
38. Grimaldi MC, Clayton J, Pontaroti P, Cambon-Thomsen A, Crouau-Roy B. A new highly polymorphic microsatellite marker in linkage disequilibrium with HLA B. Hum Immunol 1996: 51: 89-94.
39. Blanquer-Maumont A, Crau-Roy B. Polymorphism, monomorphism and sequences in conserved microsatellites in primate species. J Mol Evol 1995: 41: 492-7.
40. Garza JC, Slatkin M, Freimer NB. Microsatellite alleles frequencies in human and chimpanzees with implications for constraints on allele size. Mol Biol Evol 1995: 12: 594-603.
41. Crouau-Roy B, Service S, Slatkin M, Freimer NB. A fine scale comparison of the human and chimpanzee genomes: linkage disequilibrium and sequence analysis. Hum Mol Genet 1996: 5: 1131-7.
42. Grimaldi MC, Crouau-Roy B. Microsatellite allelic homoplasy due to variable flanking sequences. J Mol Evol 1997: 44: 336-40.
43. Crouau-Roy B, Bouzekri N, Carcassi C, Contu L, Cambon-Thomsen A. Strong association between microsatellites and an HLA-B, DR haplotype (B18-DR3): implication for microsatellite evolution. Immunogenetics 1996: 43: 255-60.
44. Ellis MC, Hetisimer AH, Ruddy DA et al. HCA class II haplotype and sequence analysis support a role for DQ in narcolepsy. Immunogenetics (in press).