-
1
-
-
0023216678
-
Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzyme
-
Aldrich, T. L., B. Frantz, J. F. Gill, J. J. Kilbane, and A. M. Chakrabarty. 1987. Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzyme. Gene 52:185-195.
-
(1987)
Gene
, vol.52
, pp. 185-195
-
-
Aldrich, T.L.1
Frantz, B.2
Gill, J.F.3
Kilbane, J.J.4
Chakrabarty, A.M.5
-
2
-
-
0028799364
-
Acetate utilization is inhibited by benzoate in Alcaligenes eutrophus: Evidence for transcriptional control of the expression of acoE coding for acetyl coenzymc A synthetase
-
Ampe, F., and N. D. Lindley. 1995. Acetate utilization is inhibited by benzoate in Alcaligenes eutrophus: evidence for transcriptional control of the expression of acoE coding for acetyl coenzymc A synthetase. J. Bacteriol. 177:5826-5833.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5826-5833
-
-
Ampe, F.1
Lindley, N.D.2
-
3
-
-
0026512230
-
Fumarate or a fumarate metabolite restores switching ability to rotating flagella of bacterial envelopes
-
Barak, R., and M. Eisenbach. 1992. Fumarate or a fumarate metabolite restores switching ability to rotating flagella of bacterial envelopes. J Bacteriol. 174:643-645.
-
(1992)
J Bacteriol.
, vol.174
, pp. 643-645
-
-
Barak, R.1
Eisenbach, M.2
-
4
-
-
0030898164
-
Activation of the catBCA promoter: Probing the interaction of CatR and RNA polymerase through in vitro transcription
-
Chugani, S. A., M. R. Parsek, C. D. Hershberger, K. Murakami, A. Ishihama, and A. M. Chakrabarty. 1997. Activation of the catBCA promoter: probing the interaction of CatR and RNA polymerase through in vitro transcription. J. Bacteriol. 179:2221-2227.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2221-2227
-
-
Chugani, S.A.1
Parsek, M.R.2
Hershberger, C.D.3
Murakami, K.4
Ishihama, A.5
Chakrabarty, A.M.6
-
5
-
-
0028128866
-
Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter
-
Coco, W. M., M. R. Parsek, and A. M. Chakrabarty. 1994. Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter. J. Bacteriol. 176:5530-5533.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5530-5533
-
-
Coco, W.M.1
Parsek, M.R.2
Chakrabarty, A.M.3
-
6
-
-
0027389217
-
Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD operon in Pseudomonas putida
-
Coco, W. M., R. K. Rothmel, S. Henikaff, and A. M. Chakrabarty. 1993. Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD operon in Pseudomonas putida. J. Bacteriol. 175:417-427.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 417-427
-
-
Coco, W.M.1
Rothmel, R.K.2
Henikaff, S.3
Chakrabarty, A.M.4
-
7
-
-
84879282557
-
Vectors with restriction site banks. V. pJRD215, a wide-host-range cosmid vector with multiple cloning sites
-
Davison, J., M. Heusterspreute, N. Chevalier, V. Ha-Thi, and F. Brunel. 1987. Vectors with restriction site banks. V. pJRD215, a wide-host-range cosmid vector with multiple cloning sites. Gene 51:275-280.
-
(1987)
Gene
, vol.51
, pp. 275-280
-
-
Davison, J.1
Heusterspreute, M.2
Chevalier, N.3
Ha-Thi, V.4
Brunel, F.5
-
8
-
-
0028226744
-
Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWWO) growing on succinate in continuous culture: Evidence of carbon catabolite repression control
-
Duetz, W. A., S. Marques, C. de Jong, J. Ramos, and J. G. van Andel. 1994. Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWWO) growing on succinate in continuous culture: evidence of carbon catabolite repression control. J. Bacteriol. 176:2354-2361.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2354-2361
-
-
Duetz, W.A.1
Marques, S.2
De Jong, C.3
Ramos, J.4
Van Andel, J.G.5
-
9
-
-
0025370615
-
Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters
-
Farinha, M. A., and A. M. Kropinski. 1990. Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters. J. Bacteriol. 172:3496-3499.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 3496-3499
-
-
Farinha, M.A.1
Kropinski, A.M.2
-
10
-
-
38149144971
-
Microbial degradation of synthetic recalcitrant compounds
-
Frantz, B., T. Aldrich, and A. M. Chakrabarty. 1987. Microbial degradation of synthetic recalcitrant compounds. Biotechnol. Adv. 5:85-99.
-
(1987)
Biotechnol. Adv.
, vol.5
, pp. 85-99
-
-
Frantz, B.1
Aldrich, T.2
Chakrabarty, A.M.3
-
11
-
-
0023374169
-
Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
-
Frantz, B., and A. M. Chakrabarty. 1987. Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc. Natl. Acad. Sci. USA 84:4460-4464.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4460-4464
-
-
Frantz, B.1
Chakrabarty, A.M.2
-
12
-
-
0026396170
-
Toxicity of chlorobenzene on Pseudomonas sp. strain RHO1, a chlorobenzene-degrading strain
-
Fritz, H., W. Reineke, and E. Schmidt. 1992. Toxicity of chlorobenzene on Pseudomonas sp. strain RHO1, a chlorobenzene-degrading strain. Biodegradation 2:165-170.
-
(1992)
Biodegradation
, vol.2
, pp. 165-170
-
-
Fritz, H.1
Reineke, W.2
Schmidt, E.3
-
13
-
-
0029848193
-
Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus
-
Gaines, G. L. I., L. Smith, and E. L. Neidle. 1996. Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus. J. Bacteriol. 178:6833-6841.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6833-6841
-
-
Gaines, G.L.I.1
Smith, L.2
Neidle, E.L.3
-
14
-
-
0021860737
-
Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4
-
Ghosal, D., I.-S. You, D. K. Chatterjee, and A. M. Chakrabarty. 1985. Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4. Proc. Natl. Acad. Sci. USA 82:1638-1642.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 1638-1642
-
-
Ghosal, D.1
You, I.-S.2
Chatterjee, D.K.3
Chakrabarty, A.M.4
-
15
-
-
0029795374
-
The β-ketoadipate pathway and the biology of self-identity
-
Harwood, C. S., and R. E. Parales. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
16
-
-
0031039076
-
Fumarase C activity is elevated in response to iron deprivation and in mucoid, alginate-producing Pseudomonas aeruginosa: Cloning and characterization of fumC and purification of native FumC
-
Hassett, D. J., M. L. Howell, P. A. Sokol, M. L. Vasil, and G. E. Dean. 1997. Fumarase C activity is elevated in response to iron deprivation and in mucoid, alginate-producing Pseudomonas aeruginosa: cloning and characterization of fumC and purification of native FumC. J. Bacteriol. 179:1421-1451.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1421-1451
-
-
Hassett, D.J.1
Howell, M.L.2
Sokol, P.A.3
Vasil, M.L.4
Dean, G.E.5
-
17
-
-
0013483174
-
Development of hybrid strains for the mineralization of chloroaromatics
-
T. Nakazawa, K. Furukawa, D. Haas, and S. Silver (ed.), ASM Press, Washington, D.C.
-
Havel, J., T. Kaberg, S. R. Kaschabek, H. Mokross, D. Muller, and W. Reineke. 1996. Development of hybrid strains for the mineralization of chloroaromatics, p. 94-120. In T. Nakazawa, K. Furukawa, D. Haas, and S. Silver (ed.), Molecular biology of pseudomonads. ASM Press, Washington, D.C.
-
(1996)
Molecular Biology of Pseudomonads
, pp. 94-120
-
-
Havel, J.1
Kaberg, T.2
Kaschabek, S.R.3
Mokross, H.4
Muller, D.5
Reineke, W.6
-
18
-
-
0029094045
-
The algT (algU) gene of Pseudomonas aeruginosa, a key regulator involved in alginate biosynthesis, encodes an alternative sigma factor (sigma E)
-
Hershberger, C. D., R. W. Ye, M. R. Parsek, Z.-D. Xie, and A. M. Chakrabarty. 1995. The algT (algU) gene of Pseudomonas aeruginosa, a key regulator involved in alginate biosynthesis, encodes an alternative sigma factor (sigma E). Proc. Natl. Acad. Sci. USA 92:7941-7945.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7941-7945
-
-
Hershberger, C.D.1
Ye, R.W.2
Parsek, M.R.3
Xie, Z.-D.4
Chakrabarty, A.M.5
-
19
-
-
0027198281
-
Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation
-
Hofer, B., L. D. Eltis, D. N. Dowling, and K. N. Timmis. 1993. Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation. Gene 130:47-55.
-
(1993)
Gene
, vol.130
, pp. 47-55
-
-
Hofer, B.1
Eltis, L.D.2
Dowling, D.N.3
Timmis, K.N.4
-
20
-
-
0025992172
-
The cysP promoter of Salmonella typhimurium: Characterization of two binding sites for CysB protein, studies of in vivo transcription initiation, and demonstration of the anti-inducer effects of thiosulfate
-
Hryniewicz, M. M., and N. M. Kredich. 1991. The cysP promoter of Salmonella typhimurium: characterization of two binding sites for CysB protein, studies of in vivo transcription initiation, and demonstration of the anti-inducer effects of thiosulfate. J. Bacteriol. 173:5876-5886.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5876-5886
-
-
Hryniewicz, M.M.1
Kredich, N.M.2
-
21
-
-
0029852994
-
The tfdR gene product can successfully take over the role of the insertion element-inactivated TdfT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)
-
Leveau, J. H. J., and J. R. van der Meer. 1996. The tfdR gene product can successfully take over the role of the insertion element-inactivated TdfT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4). J. Bacteriol. 178:6824-6832.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6824-6832
-
-
Leveau, J.H.J.1
Van Der Meer, J.R.2
-
22
-
-
0029796309
-
The nucleotide sequence of the Pseudomonas aeruginosa pyrE-crc-rph region and the purification of the crc gene product
-
MacGregor, C. H., S. K. Arora, P. W. Hager, M. B. Dail, and P. V. Phibbs, Jr. 1996. The nucleotide sequence of the Pseudomonas aeruginosa pyrE-crc-rph region and the purification of the crc gene product. J. Bacteriol. 178: 5627-5635.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5627-5635
-
-
MacGregor, C.H.1
Arora, S.K.2
Hager, P.W.3
Dail, M.B.4
Phibbs Jr., P.V.5
-
23
-
-
0040768065
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1982)
Molecular Cloning: A Laboratory Manual
-
-
Maniatis, T.1
Fritsch, E.F.2
Sambrook, J.3
-
24
-
-
0030754611
-
DNase I footprinting, DNa bending and in vitro transcription analyses of ClcR and CatR on the clcABD promoter: Evidence of a conserved transcriptional activation mechanism
-
McFall, S. M., T. J. Klem, N. Fujita, A. Ishihama, and A. M. Chakrabarty. 1997. DNase I footprinting, DNA bending and in vitro transcription analyses of ClcR and CatR on the clcABD promoter: evidence of a conserved transcriptional activation mechanism. Mol. Microbiol. 24:965-976.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 965-976
-
-
McFall, S.M.1
Klem, T.J.2
Fujita, N.3
Ishihama, A.4
Chakrabarty, A.M.5
-
25
-
-
0030974367
-
2-Chloromuconate and ClcR-mediated activation of the clcABD operon: In vitro transcriptional and DNase I footprint analyses
-
McFall, S. M., M. R. Parsek, and A. M. Chakrabarty. 1997 2-Chloromuconate and ClcR-mediated activation of the clcABD operon: in vitro transcriptional and DNase I footprint analyses. J. Bacteriol. 179:3655-3663.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3655-3663
-
-
McFall, S.M.1
Parsek, M.R.2
Chakrabarty, A.M.3
-
26
-
-
0003785155
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
27
-
-
0029832101
-
Phosphorylation-independent bacterial chemoresponses correlate with changes in the cytoplasmic level of fumarate
-
Montrone, M., D. Oesterhelt, and W. Marwan. 1996. Phosphorylation-independent bacterial chemoresponses correlate with changes in the cytoplasmic level of fumarate. J. Bacteriol. 178:6882-6887.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6882-6887
-
-
Montrone, M.1
Oesterhelt, D.2
Marwan, W.3
-
28
-
-
0029874406
-
Carbon catabolite repression of phenol degradation in Pseudomonas putida is mediated by the inhibition of the activator protein PhlR
-
Müller, C., L. Petruschka, H. Cuypers, G. Burchhardt, and H. Herrmann. 1996. Carbon catabolite repression of phenol degradation in Pseudomonas putida is mediated by the inhibition of the activator protein PhlR. J. Bacteriol. 178:2030-2036.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2030-2036
-
-
Müller, C.1
Petruschka, L.2
Cuypers, H.3
Burchhardt, G.4
Herrmann, H.5
-
29
-
-
0024003087
-
Abundant expression of Pseudomonas genes for chlorocatechol metabolism
-
Ngai, K.-L., and L. N. Ornston. 1987. Abundant expression of Pseudomonas genes for chlorocatechol metabolism. J. Bacteriol. 170:2412-2413.
-
(1987)
J. Bacteriol.
, vol.170
, pp. 2412-2413
-
-
Ngai, K.-L.1
Ornston, L.N.2
-
30
-
-
0028841927
-
Repression of 4-hydroxybenzoate transport and degradation by benzoate: A new layer of regulatory control in the Pseudomonas putida β-ketoadipate pathway
-
Nichols, N. N., and C. S. Harwood. 1995. Repression of 4-hydroxybenzoate transport and degradation by benzoate: a new layer of regulatory control in the Pseudomonas putida β-ketoadipate pathway. J. Bacteriol. 177:7033-7040.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 7033-7040
-
-
Nichols, N.N.1
Harwood, C.S.2
-
31
-
-
0025189841
-
In vitro interaction of CysB protein with the cysJIH promoter of Salmonella typhimurium: Inhibitory effects of sulfide
-
Ostrowski, J., and N. M. Kredich. 1990. In vitro interaction of CysB protein with the cysJIH promoter of Salmonella typhimurium: inhibitory effects of sulfide. J. Bacteriol. 172:779-785.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 779-785
-
-
Ostrowski, J.1
Kredich, N.M.2
-
32
-
-
0027239529
-
Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida
-
Parales, R. E., and C. S. Harwood. 1993. Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida. J. Bacteriol. 175:5829-5838.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 5829-5838
-
-
Parales, R.E.1
Harwood, C.S.2
-
33
-
-
0028565028
-
Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: Functional and evolutionary implications
-
Parsek, M. R., S. M. McFall, D. L. Shinabarger, and A. M. Chakrabarty. 1994. Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: functional and evolutionary implications. Proc. Natl. Acad. Sci. USA 91:12393-12397.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12393-12397
-
-
Parsek, M.R.1
McFall, S.M.2
Shinabarger, D.L.3
Chakrabarty, A.M.4
-
34
-
-
0026495342
-
Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida
-
Parsek, M. R., D. L. Shinabarger, R. K. Rothmel, and A. M. Chakrabarty. 1992. Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida. J. Bacteriol. 174:7798-7806.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 7798-7806
-
-
Parsek, M.R.1
Shinabarger, D.L.2
Rothmel, R.K.3
Chakrabarty, A.M.4
-
35
-
-
0025357079
-
Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4
-
Perkins, E. J., M. P. Gordon, O. Caceres, and P. F. Lurquin. 1990. Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4. J. Bacteriol. 172:2351-2359.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 2351-2359
-
-
Perkins, E.J.1
Gordon, M.P.2
Caceres, O.3
Lurquin, P.F.4
-
37
-
-
0025139202
-
Nucleotide sequencing and characterization of Pseudomonas putida catR: A positive regulator of the catBC operon is a member of the LysR family
-
Rothmel, R. K., T. L. Aldrich, J. E. Houghton, W. M. Coco, L. N. Ornston, and A. M. Chakrabarty. 1990. Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family. J. Bacteriol. 172:922-931.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 922-931
-
-
Rothmel, R.K.1
Aldrich, T.L.2
Houghton, J.E.3
Coco, W.M.4
Ornston, L.N.5
Chakrabarty, A.M.6
-
38
-
-
0025740524
-
Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region
-
van der Meer, J. R., A. C. J. Frijters, J. H. J. Leveau, R. I. L. Eggen, A. J. B. Zehnder, and W. M. de Vos. 1991. Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region. J. Bacteriol. 173:3700-3708.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3700-3708
-
-
Van Der Meer, J.R.1
Frijters, A.C.J.2
Leveau, J.H.J.3
Eggen, R.I.L.4
Zehnder, A.J.B.5
De Vos, W.M.6
-
39
-
-
0015296193
-
Genetic control of enzyme induction in the β-ketoadipate pathway of Pseudomonas putida: Deletion mapping of cat mutations
-
Wheelis, M. L., and L. N. Ornston. 1972. Genetic control of enzyme induction in the β-ketoadipate pathway of Pseudomonas putida: deletion mapping of cat mutations. J. Bacteriol. 109:790-795.
-
(1972)
J. Bacteriol.
, vol.109
, pp. 790-795
-
-
Wheelis, M.L.1
Ornston, L.N.2
-
40
-
-
0025815884
-
Isolation and characterization of catabolite repression control mutants of Pseudomonas aeruginosa PAO
-
Wolff, J. A., C. H. MacGregor, R. C. Eisenberg, and P. V. Phibbs, Jr. 1991. Isolation and characterization of catabolite repression control mutants of Pseudomonas aeruginosa PAO. J. Bacteriol. 173:4700-4706.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 4700-4706
-
-
Wolff, J.A.1
MacGregor, C.H.2
Eisenberg, R.C.3
Phibbs Jr., P.V.4
-
41
-
-
0028998460
-
Genetic and molecular analysis of a regulatory region of the herbicide 2,4-dichlorophenoxyacetate catabolic plasmid pJP4
-
You, I.-S., and D. Ghosal. 1995. Genetic and molecular analysis of a regulatory region of the herbicide 2,4-dichlorophenoxyacetate catabolic plasmid pJP4. Mol. Microbiol. 16:321-331.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 321-331
-
-
You, I.-S.1
Ghosal, D.2
|