Expressed sequence tags (ESTs) from the marine red alga Gracilaria gracilis

Journal of Applied Phycology

Volumn 9, Issue 3, 1997, Pages 287-293

  Lluisma, Arturo O ^a,b,c   Ragan, Mark A ^a,d  

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^b DALHOUSIE UNIVERSITY   (Canada)

^c University of the Philippines Diliman   (Philippines)

^d CANADIAN INSTITUTE FOR ADVANCED RESEARCH   (Canada)

Author keywords

Carbohydrate biosynthesis; EST; Expressed sequence tag; Gracilaria

Indexed keywords

ALGAE; GRACILARIA; GRACILARIA GRACILIS; RHODOPHYTA;

EID: 0030697828     PISSN: 09218971     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1007920607900     Document Type: Article

References (36)

1. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kerlavage AR, McCombie WR, Venter JC (1991) Complementary DNA sequencing: expressed sequence tags and Human Genome Project. Science 252: 1651-1656.
2. Adams MD, Kerlavage AR, Fleischmann RD, Fuldner RA, Bult CA, Lee NH, Kirkness EF, Weinstock KG, Gocayne JD, White O, et al. [86 co-authors] (1995) Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377: 3-174.
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman D (1990) Basic local alignment search tool. J. Mol. Biol. 215: 403-10.
4. Apt KE, Grossman AR (1992) A polyubiquitin cDNA from a red alga. PI. Physiol. 99: 1732-1733.
5. Apt KE, Hoffman NE, Grossman AR (1993) The gamma subunit of R-phycoerythrin and its possible mode of transport into the plastid of red algae. J. biol. Chem. 268: 16208-16215.
6. Avery OT, MacLeod CM, McCarty M (1944) Studies on the chemical nature of the substance inducing transformation of Pneumonococcus types. J. exp. Med. 79: 137-158.
7. Bird CJ, Kain JM (1995) Recommended names of included species of Gracilariaceae. J. appl. Phycol. 7: 335-338.
8. Bouget FY, Kerbourc'h C, Liaud MF, Loiseaux de Goër S, Quatrano RS, Cerff R, Kloareg B (1995) Structural features and phylogeny of the actin gene of Chondrus crispus (Gigartinales, Rhodophyta). Curr. Genet. 28: 164-172.
9. Boguski MS (1995) The turning point in genome research. Trends Biochem. Sci. 20: 295-296.
10. Brachmann CB, Sherman JM, Devine SE, Cameron EE, Pillus L, Boeke JD (1995) The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability. Genes Dev. 9: 2888-2902.
11. Claverie J-M (1995) Exploring the vast territory of uncharted ESTs. In Browne MJ, Thurlby PL (eds), Genomes, Molecular Biology and Drug Discovery. Academic Press, London: 55-71.
12. Chen EY (1994) The efficiency of automated DNA sequencing. In Adams MD, Fields C, Venter JC (eds) Automated DNA sequencing and analysis. Academic Press, London: 3-10.
13. Delseny M, Cooke R, Raynal M, Grellet F (1997) The Arabidopsis thaliana cDNA sequencing projects. FEBS Letters 403: 221-224.
14. DujonB (1996) The yeast genome project: what did we learn? Trends Genet. 12: 263-270.
15. Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb J-F, et al. [40 co- authors] (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
16. Gish W, States DJ (1993) Identification of protein coding regions by database similarity search. Nature Genet. 3: 266-272.
17. Goffeau A, Aert R, Agostini-Carbone ML, Ahmed A, Aigle M, Alberghina L, Albermann K, Albers M, et al. [633 co- authors] (1997) The yeast genome directory. Nature 387(suppl.): 5-105.
18. Gottlieb S, Esposito RE (1989) A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA. Cell 56: 771-776.
19. Hillier LaD, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, et al. [33 co-authors] (1996) Generation and analysis of 280,000 human expressed sequence tags. Genome Res. 6: 807-828.
20. Laurenson P, Rine J (1992) Silencers, silencing, and heritable transcriptional states. Microb. Rev. 56: 543-560.
21. Levine RL, Mosoni L, Berlett BS, Stadtman ER (1996) Methionine residues as endogenous antioxidants in proteins. Proc. natl Acad. Sci. USA 93: 15036-15040.
22. Kretz K, Callen W, Hedden V, Kaderli M (1993) Improved primers for the Bluescript phagemid vector. [Stratagene] Strategies 6: 15-16.
23. Pearson WR (1991) Identifying distantly related protein sequences. Curr. Opin. Struct. Biol. 1: 321-326.
24. Rounsley SD, Glodek A, Sutton G, Adams MD, Somerville CR, Venter JC, Kerlavage AR (1996) The construction of Arabidopsis expressed sequence tag assemblies. PI. Physiol. 112: 1177-1183.
25. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning. A Laboratory Manual. Second Edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, vol. 3: A. 1 and A.4.
26. Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tomé P, et al. [104 co- authors] (1996) A gene map of the human genome. Science 274: 540-546.
27. Smith RF, Wiese B A, Wojzynski MK, Davison DB, Worley KC (1996) BCM Search Launcher - an integrated interface to molecular biology data base search and analysis services available on the World Wide Web. Genome Res. 6: 454-462.
28. Steentoft M, Irvine LM & Farnham WF (1994) Two terete species of Gracilaria and Gradlariopsis (Gracilariales, Rhodophyta) in Britain. Phycologia 34: 113-127.
29. Watson JD, Crick FHC (1953) Genetical implications of the structure of deoxyribonucleic acid. Nature 171: 964-967.
30. White O, Dunning T, Sutton G, Adams M, Venter JC, Fields C (1993) A quality control algorithm for DNA sequencing projects. Nucl. Acids Res. 21: 3829-3838.
31. Wolfsberg TG, Landsman D (1997) A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucl. Acids Res. 25: 1626-1632.
32. Worley KC, Wiese BA, Smith RF (1995) BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res. 5: 173-184.
33. Yager TD, Zewert TE, Hood LE (1994) The Human Genome Project. Ace. Chem. Res. 27: 94-100.
34. Zhou Y-H, Ragan MA (1993) cDNA cloning and characterization of the nuclear gene encoding chloroplast glyceraldehyde3-phosphate dehydrogenase from the marine red alga Gracilaria verrucosa. Curr. Genet. 23: 483-489.
35. Zhou Y-H, Ragan MA (1995a) Characterization of the polyubiquitin gene in the marine red alga Gracilaria verrucosa. Biochim. biophys. Acta 1261: 215-222.
36. Zhou Y-H, Ragan MA (1995b) Characterization of the nuclear gene encoding mitochondrial aconitase in the marine red alga Gracilaria verrucosa. PI. mol. Biol. 28: 635-646.