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Fields S: The future is function. Nat Genet 1997, 15:325-327.
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A protein linkage map of Escherichia coli bacteriophage T7
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Bartel PL, Roecklein JA, SenGupta D, Fields S: A protein linkage map of Escherichia coli bacteriophage T7. Nat Genet 1996, 12:72-77. This paper is a preview of future genome-wide two-hybrid system analyses. The authors construct a 'protein linkage' map for the E. coli bacteriophage T7 and suggest that this approach should also be feasible for more complex organisms.
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Nat Genet
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Genetic and biochemical probes for protein-protein interactions
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McNabb DS, Guarente L: Genetic and biochemical probes for protein-protein interactions. Curr Opin Biotechnol 1996, 7:554-559. Last year's excellent review in Current Opinion in Biotechnology covers some of the aspects of the two-hybrid system that we omitted, describes the chemical inducers of dimerization technology in detail and comments also on biochemical probes for protein-protein interactions.
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Curr Opin Biotechnol
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McNabb, D.S.1
Guarente, L.2
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Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2
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Nature
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Cohen, B.2
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Protein-peptide interactions analyzed with the yeast two-hybrid system
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Yang M, Wu Z, Fields S: Protein-peptide interactions analyzed with the yeast two-hybrid system. Nucleic Acids Res 1995, 23:1152-1156.
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Nucleic Acids Res
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Yang, M.1
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Fields, S.3
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Identification of a cDNA for SSRP1, an HMG-box protein, by interaction with the c-Myc oncoprotein in a novel bacterial expression screen
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Bunker CA, Kingston RE: Identification of a cDNA for SSRP1, an HMG-box protein, by interaction with the c-Myc oncoprotein in a novel bacterial expression screen. Nucleic Acids Res 1995, 23:269-276.
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Nucleic Acids Res
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Bunker, C.A.1
Kingston, R.E.2
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Allen JB, Walberg MW, Edwards MC, Elledge SJ: Finding prospective partners in the library: the two-hybrid system and phage display find a match. Trends Biochem Sci 1995, 20:511-516.
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Walberg, M.W.2
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Fields S, Sternglanz R: The two-hybrid system: an assay for protein-protein interactions. Trends Genet 1994, 10:286-292.
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Trends Genet
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Fields, S.1
Sternglanz, R.2
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Applications of interaction traps/two-hybrid systems to biotechnology research
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Mendelsohn AR, Brent R: Applications of interaction traps/two-hybrid systems to biotechnology research. Curr Opin Biotechnol 1994, 5:482-486.
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Curr Opin Biotechnol
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Mendelsohn, A.R.1
Brent, R.2
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Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
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James P, Halladay J, Craig EA: Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast Genetics 1996, 144:1425-1436. The authors address some of the persistent shortcomings of two-hybrid system screens with two improved tools. They constructed superior yeast genomic two-hybrid libraries and developed a new yeast reporter strain that is reportedly able to detect weak interactions, eliminate many false positives and quickly identify the remainder. Key features of this strain are three integrated reporter genes, HIS3, ADE2 and lacZ, all under the control of different promoters (GAL1, GAL2 and GAL7, respectively), which respond to the same activator, Gal4.
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Genetics
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James, P.1
Halladay, J.2
Craig, E.A.3
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Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions
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Vidal M, Brachmann RK, Fattaey A, Harlow E, Boeke JD: Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions. Proc Natl Acad Sci USA 1996, 93:10315-10320. This paper describes a 'reverse' two- and one-hybrid system based on the yeast URA3 gene. The systems use a tightly regulated URA3 gene (SPO13-URA3) with upstream Gal4 or p53 binding sites. Such strains can be used to identify mutations or macromolecular dissociators that disrupt protein-protein or protein-DNA interactions. Examples for 'reverse' two- and one-hybrid assays are provided and potential future applications are discussed.
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Proc Natl Acad Sci USA
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Vidal, M.1
Brachmann, R.K.2
Fattaey, A.3
Harlow, E.4
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SIN3-dependent transcriptional repression by interaction with the Mad1 DNA-binding protein
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Kasten MM, Ayer DE, Stillman DJ: SIN3-dependent transcriptional repression by interaction with the Mad1 DNA-binding protein. Mol Cell Biol 1996, 16:4215-4221. The authors provide an elegant example of how the 2HS can be used to study the effect of yeast host factors on a two-hybrid protein interaction. They demonstrate that LexA-Mad1 and VP16-Max fusion proteins are unable to activate transcription of the reporter gene lacZ in a wild-type yeast strain, but do so in a sin3 knockout strain.
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Mol Cell Biol
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Kasten, M.M.1
Ayer, D.E.2
Stillman, D.J.3
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Ayer DE, Kretzner L, Eisenman RN: Mad: a heterodimeric partner for Max that antagonizes Myc transcriptional activity. Cell 1993, 72:211-222.
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Ayer, D.E.1
Kretzner, L.2
Eisenman, R.N.3
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A B-cell coactivator of octamer-binding transcription factors
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Gstaiger M, Knoepfel L, Georgiev O, Schaffner W, Hovens CM: A B-cell coactivator of octamer-binding transcription factors. Nature 1995, 373:360-362.
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Gstaiger, M.1
Knoepfel, L.2
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Schaffner, W.4
Hovens, C.M.5
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0029858709
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BZLF1 (ZEBRA, Zta) protein of Epstein-Barr virus selected in a yeast one-hybrid system by binding to a consensus site in the IgH intronic enhancer: A role in immunoglobulin expression?
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Gstaiger M, Hovens C, Georgiev O, Knoepfel L, Schaffner W: BZLF1 (ZEBRA, Zta) protein of Epstein-Barr virus selected in a yeast one-hybrid system by binding to a consensus site in the IgH intronic enhancer: a role in immunoglobulin expression? Biol Chem 1996, 377:669-673. Together with [15], this paper illustrates a variation of the one-hybrid system able to identify proteins that require the presence of a second native protein, here Oct-2A, bound to the DNA sequence of interest in order to give a transcriptional readout. This approach may find additional proteins that are unable to interact with the protein of interest alone (e.g. Oct-2A in a two-hybrid system).
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Biol Chem
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Gstaiger, M.1
Hovens, C.2
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Schaffner, W.5
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0012316186
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Differential ligand-dependent interactions between the AF-2 activating domain of nuclear receptors and the putative transcriptional intermediary factors mSUG1 and TIF1
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Vom Baur E, Zechel C, Heery D, Heine MJ, Garnier JM, Vivat V, Le Douarin B, Gronemeyer H, Chambon P, Losson R: Differential ligand-dependent interactions between the AF-2 activating domain of nuclear receptors and the putative transcriptional intermediary factors mSUG1 and TIF1. EMBO J 1996, 15:110-124.
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Vom Baur, E.1
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Garnier, J.M.5
Vivat, V.6
Le Douarin, B.7
Gronemeyer, H.8
Chambon, P.9
Losson, R.10
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0343632400
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Ligand-dependent interaction between the estrogen receptor and the human homologues of SWI2/SNF2
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Ichinose H, Garnier JM, Chambon P, Losson R: Ligand-dependent interaction between the estrogen receptor and the human homologues of SWI2/SNF2. Gene 1997, 188:95-100.
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Ichinose, H.1
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0031024327
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The N-terminal domain of transcription factor IIB is required for direct interaction with the vitamin D receptor and participates in vitamin D-mediated transcription
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Masuyama H, Jefcoat SC Jr, MacDonald PN: The N-terminal domain of transcription factor IIB is required for direct interaction with the vitamin D receptor and participates in vitamin D-mediated transcription. Mol Endocrinol 1997, 11:218-228.
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Jefcoat S.C., Jr.2
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Functional in vivo interaction between the amino-terminal, transactivation domain and the ligand binding domain of the androgen receptor
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Doesburg P, Kuil CW, Berrevoets CA, Steketee K, Faber PW, Mulder E, Brinkmann AO, Trapman J: Functional in vivo interaction between the amino-terminal, transactivation domain and the ligand binding domain of the androgen receptor. Biochemistry 1997, 36:1052-1064.
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Brinkmann, A.O.7
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GRIP1, a novel mouse protein that serves as a transcriptional coactivator in yeast for the hormone binding domains of steroid receptors
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Hong H, Kohli K, Trivedi A, Johnson DL, Stallcup MR: GRIP1, a novel mouse protein that serves as a transcriptional coactivator in yeast for the hormone binding domains of steroid receptors. Proc Natl Acad Sci USA 1996, 93:4948-4952.
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Hong, H.1
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Johnson, D.L.4
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GRIP1, a transcriptional coactivator for the AF-2 transactivation domain of steroid, thyroid, retinoid, and vitamin D receptors
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Hong H, Kohli K, Garabedian MJ, Stallcup MR: GRIP1, a transcriptional coactivator for the AF-2 transactivation domain of steroid, thyroid, retinoid, and vitamin D receptors. Mol Cell Biol 1997, 17:2735-2744.
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Hong, H.1
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Investigation of growth hormone releasing hormone receptor structure and activity using yeast expression technologies
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Kajkowski EM, Price LA, Pausch MH, Young KH, Ozenberger BA: Investigation of growth hormone releasing hormone receptor structure and activity using yeast expression technologies. J Recept Signal Transduct Res 1997, 17:293-303.
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Kajkowski, E.M.1
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Pausch, M.H.3
Young, K.H.4
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24
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Investigation of ligand binding to members of the cytokine receptor family within a microbial system
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Young KH, Ozenberger BA: Investigation of ligand binding to members of the cytokine receptor family within a microbial system. Ann NY Acad Sci 1995, 766:279-281.
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Young, K.H.1
Ozenberger, B.A.2
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0028840683
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Functional coupling of a mammalian somatostatin receptor to the yeast pheromone response pathway
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Price LA, Kajkowski EM, Hadcock JR, Ozenberger BA, Rausch MH: Functional coupling of a mammalian somatostatin receptor to the yeast pheromone response pathway. Mol Cell Biol 1995, 15:6188-6195.
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Price, L.A.1
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Hadcock, J.R.3
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Rausch, M.H.5
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0029762164
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Yeast alpha mating factor structure-activity relationship derived from genetically selected peptide agonists and antagonists of Ste2p
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Manfredi JP, Klein C, Herrero JJ, Byrd DR, Truehart J, Wiesler WT, Fowlkes DM: Yeast alpha mating factor structure-activity relationship derived from genetically selected peptide agonists and antagonists of Ste2p. Mol Cell Biol 1996, 16:4700-4709. The authors describe powerful genetic tools to analyse G-protein-coupled receptors in yeast. By genetically altering the pheromone pathway in yeast, they can screen for agonists and antagonists of a particular transmembrane receptor. These artificial ligands are expressed in the yeast strain of interest as part of a random peptide library and function in an autocrine fashion. This technology may become the preferred way of rapidly gaining information on orphan receptors or high-affinity agonists and antagonists for known receptors.
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Mol Cell Biol
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Manfredi, J.P.1
Klein, C.2
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Wiesler, W.T.6
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0028802599
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The yeast tribrid system-genetic detection of trans-phosphorylated ITAM-SH2-interactions
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Functional interaction of ligands and receptors of the hematopoietic superfamily in yeast
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Ozenberger BA, Young KH: Functional interaction of ligands and receptors of the hematopoietic superfamily in yeast. Mol Endocrinol 1995, 9:1321-1329.
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Young, K.H.2
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A yeast three-hybrid method to clone ternary protein complex components
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Zhang J, Lautar S: A yeast three-hybrid method to clone ternary protein complex components. Anal Biochem 1996, 242:68-72. This 'three-hybrid' system shows that ternary complexes of two hybrid proteins and one bridging protein give correct phenotypic readouts. A library screen is described that re-isolated the bridging protein of the described ternary protein complex.
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Zhang, J.1
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A tri-hybrid system for the analysis and detection of RNA-protein interactions
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Putz U, Skehel P, Kuhl D: A tri-hybrid system for the analysis and detection of RNA-protein interactions. Nucleic Acids Res 1996, 24:4838-4840. The 'tri-hybrid' system for RNA-protein interactions uses as bait a hybrid between the Gal4 DNA binding domain and the RevM10 mutant of the HIV-1 Rev protein which recognizes its RNA, the Rev responsive element as part of a hybrid RNA. It allows for screening of novel RNAs and RNA binding proteins. A successful screen for specific RNA-binding proteins with well-designed secondary screens is briefly described.
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Nucleic Acids Res
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Putz, U.1
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Holsinger LJ, Spencer DM, Austin DJ, Schreiber SL, Crabtree GR: Signal transduction in T lymphocytes using a conditional allele of Sos. Proc Natl Acad Sci USA 1995, 92:9810-9814.
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Ho SN, Biggar SR, Spencer DM, Schreiber SL, Crabtree GR: Dimeric ligands define a role for transcriptional activation domains in reinitiation. Nature 1996, 382:822-826.
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Controlling signal transduction with synthetic ligands
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A general strategy for producing conditional alleles of Src-like tyrosine kinases
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Spencer DM, Graef I, Austin DJ, Schreiber SL, Crabtree GR: A general strategy for producing conditional alleles of Src-like tyrosine kinases. Proc Natl Acad Sci USA 1995, 92:9805-9809.
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Functional analysis of Fas signaling in vivo using synthetic inducers of dimerization
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Spencer DM, Belshaw PJ, Chen L, Ho SN, Randazzo F, Crabtree GR, Schreiber SL: Functional analysis of Fas signaling in vivo using synthetic inducers of dimerization. Curr Biol 1996, 6:839-847.
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The gene for histone RNa hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNa binding protein
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Leanna CA, Hannink M: The reverse two-hybrid system: a genetic scheme for selection against specific protein-protein interactions. Nucleic Acids Res 1996, 24:3341-3347. This 'reverse two-hybrid' system can select against defined protein-protein interactions by using CYH2 as the reporter gene. The interaction of the c-Rel and p40 proteins was studied, and results with cycloheximide plates were correlated with β-galactosidase activity.
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Genetic characterization of a mammalian protein-protein interaction domain by using a yeast reverse two-hybrid system
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••] can be put to successful use. The authors show that by using both HIS3 and SPO13-URA3 reporters, point mutations that identify protein regions required for binding of E2F-1 to DP1 can be identified.
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Proc Natl Acad Sci USA
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Dominant-negative p53 mutations selected in yeast hit cancer hot spots
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••] can be put to successful use. It provides an example of macromolecular dissociators by identifying and characterizing dominant-negative p53 mutants.
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Proc Natl Acad Sci USA
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Brachmann, R.K.1
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Membrane targeting of the nucleotide exchange factor Sos is sufficient for activating the Ras signaling pathway
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