IMAGE cDNA clones, UniGene clustering, and ACeDB: An integrated resource for expressed sequence information

Genome Research

Volumn 7, Issue 10, 1997, Pages 1027-1032

  Miller, Greg ^a   Fuchs, Rainer ^a   Lai, Eric ^a  

^a GLAXOSMITHKLINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ARTICLE; AUTOMATION; CAENORHABDITIS ELEGANS; CHROMOSOMAL LOCALIZATION; COMPUTER ANALYSIS; DATA BASE; DNA LIBRARY; GENE CLUSTER; GENE EXPRESSION; GENOME; INFORMATION PROCESSING; MOLECULAR CLONING; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE;

CAENORHABDITIS ELEGANS;

EID: 0030680966     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.10.1027     Document Type: Article

References (17)

1. Aaronson, J.S., B. Eckman, R.A. Blevins, J.A. Borkowski, J. Myerson, S. Imran, and K.O. Elliston. 1996. Toward a development of a gene index to the human genome: An assessment of the nature of high-throughput EST sequence data. Genome Research 6: 829-845.
2. Adams, M.D., J.M. Kelley, J.D. Gocayne, M. Dubnick, M.H. Polyeropoulos, H. Xiao, C.R. Merril, A. Wu, B. Olde, R.F. Moreno et al. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252: 1651-1656.
3. Adams, M.D., A.R. Kerlavage, R.D. Fleischmann, R.A. Fuldner, C.J. Bult, N.H. Lee, E.F. Kirkness, K.G. Weinstock, J.D. Gocayne, O. White et al. 1995. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature (Suppl.) 377: 3-174.
4. Benson, D.A., M. Bogusky, D.J. Lipman, J. Ostell. 1996. GenBank. Nucleic Acids Res. 24: 1-5.
5. Boguski, M.S. and G.D. Schuler. 1995. ESTablishing a human transcript map. Nature Genet. 10: 369-371.
6. Boguski, M.S., M.J. Lowe, and C.M. Tolstoshev. 1993. dbEST-Database for "expressed sequence tags." Nature Genet. 4: 332-333.
7. Carey, J., J.O.C. Hamilton, J. Flynn, and G. Smith. 1995. The gene kings. Business Week May 18, pp. 72-78.
8. Eeckman, F.H. and R. Durbin. 1995. ACeDB and macace. Methods Cell. Biol. 48: 583-605.
9. Fasman, K.H., S.I. Letovsky, R.W. Cottingham, and D.T. Kingsbury. 1996. Improvements to the GDB Human Genome Data Base. Nucleic Acid Res. 24: 57-63.
10. Hillier, L., G. Lennon, M. Backer, M.F. Bonaldo, B. Chiapelli, S. Chissoe, N. Dietrich, T. DuBuque, A. Favello, W. Gish et al. 1996. Generation and analysis of 280,000 human expressed sequence tags. Genome Res. 6: 807-828.
11. Lennon, G., C. Auffray, M. Polymeropoulos, and M.B. Soares. 1996. The I.M.A.G.E. Consortium: An integrated molecular analysis of genomes and their expression. Genomics 33: 151-152.
12. Libes, D. 1994. Exploring Expect: ATCL-based toolkit for automating interactive programs. O'Reilly and Associates, Sebastopol, CA.
13. Milner, R.J. and J.G. Sutcliffe. 1983. Gene expression in rat brain. Nucleic Acids Research 11: 5497-5520.
14. Miller, G.S. and R. Fuchs. 1997. Post-processing of BLAST results using databases of clustered sequences. Comput. Appl. Biosci. 13: 81-87.
15. Putney, S.D., W.C. Herlihy, and P. Schimmel. 1983. A new troponin T and cDNA clones for 13 different muscle proteins, found by shotgun sequencing. Nature 302: 718-721.
16. Schuler, G.S., M.S. Boguski, E.A. Stewart, L.D. Stein, G. Gyapay, K. Rice, R.E. White, P. Rodriguez-Tomé, A. Aggarwal, E. Bajorek et al. 1996. A gene map of the human genome. Science 274: 540-546.
17. Thierry-Mieg, J. and R. Durbin. 1996. ACeDB: A C. elegans database. http://www.sanger/ac/uk/acedb.