Identification of a functional CT-element in the Phytophthora infestans piypt 1 gene promoter

Gene

Volumn 198, Issue 2 JAN, 1997, Pages 159-164

  Chen, Yin ^a,b   Roxby, Robert ^a  

^a UNIVERSITY OF MAINE   (United States)

^b BETH ISRAEL DEACONESS MEDICAL CENTER   (United States)

Author keywords

In vitro transcription; Initiator element; Oomycetes; Southwestern blotting; Vesicle transport

Indexed keywords

CYTOSINE; FUNGAL PROTEIN; THYMINE;

ARTICLE; FUNGAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; OOMYCETES; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION INITIATION;

BASE SEQUENCE; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GTP PHOSPHOHYDROLASES; GTP-BINDING PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PHYTOPHTHORA; PROMOTER REGIONS (GENETICS); RAB GTP-BINDING PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; SACCHAROMYCES CEREVISIAE PROTEINS;

FUNGI; MAMMALIA; OOMYCETES; PHYTOPHTHORA INFESTANS;

EID: 0030661713     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/s0378-1119(97)00310-7     Document Type: Article

References (26)

1. Adams, T.H., Timberlake, W.E., 1990. Upstream elements repress premature expression of an Aspergillus developmental regulatory gene. Mol. Cell. Biol 10, 4912-4919.
2. Ausubel, F., Brent, R., Kingston, R., Moore, D., Seidman, J., Smith, J., Stuhl, K., 1994. Current Protocols in Molecular Biology. Wiley, New York, NY.
3. Chen, Y., Roxby, R., 1996. Characterization of a Phytophthora infestans ypt1-like gene involved in vesicle transport. Gene 181, 89-94.
4. Chou, C.-H., Wang, J., Knuth, M.W., Reeves, W.H., 1992. Role of a major autoepitope in forming the DNA binding site of the p70(Ku) antigen. J. Exp. Med. 175, 1677-1684.
5. Dignam, J.D., Lebovitz, R.M., Roeder, R.G., 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489.
6. Förster, H., Coffey, M.D., Elwood, H., Sogin, M.L., 1990. Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution. Mycologia 82, 306-312.
7. Garfinkel, S., Thompson, J.A., Jacob, W.F., Cohen, J.R., Safer, B., 1990. Identification and characterization of an adenovirus 2 major late promoter CAP sequence DNA-binding protein. J. Biol. Chem. 265, 10309-10319.
8. Gealt, M.A., Sheir-Neiss, G., Morris, N.R., 1976. The isolation of nuclei from the filamentous fungus Aspergillus nidulans. J. Gen. Microbiol. 94, 204-210.
9. Hamer, J.E., Timberlake, W.E., 1987. Functional organization of the Aspergillus nidulans trpC promoter. Mol. Cell. Biol. 7, 2352-2359.
10. Hariharan, N., Perry, R.P., 1990. Functional dissection of a mouse ribosomal protein promoter: significance of the polymyrimidine initiator and an element in the TATA box region. Proc. Natl. Acad. Sci. USA 87, 1526-1530.
11. Imai, Y., Matsushima, Y., Sugimura, T., Terada, M., 1991. A simple and rapid method for generating a deletion by PCR. Nucleic Acids Res. 19, 2785
12. Johnson, P.F., McKnight, S.L., 1989. Eukaryotic transcriptional regulatory proteins. Ann. Rev. Biochem. 58, 799-839.
13. Judelson, H.S., 1996. Recent advances in the genetics of oomycete plant pathogens. Mol. Plant-Microbe Interact. 9, 443-449.
14. Judelson, H.S., Tyler, B.M., Michelmore, R.W., 1991. Transformation of the oomycete pathogen, Phytophthora infestons. Mol. Plant-Microbe Interact. 4, 602-607.
15. Kolluri, R., Torry, T.A., Kinniburgh, A.J., 1992. A CT promoter element binding protein: definition of a double-strand and a novel single-strand DNA binding motif. Nucleic Acids Res. 20, 111-116.
16. Maniatis, T., Goodbourn, S., Fischer, J.A., 1987. Regulation of inducible and tissue-specific gene expression. Science 236, 1237-1245.
17. 2 gene. Nucleic Acids Res. 23, 293-301.
18. Punt, P.J., Dingemanse, M.A., Kuyvenhoven, A., Soede, R.D.M., Pouwels, P.H., van de Hondel, C.A.M.J.J., 1990. Functional elements in the promoter region of the Aspergillus nidulans gpd A gene encoding glyceraldehyde-3-phosphate dehydrogenase. Gene 93, 101-109.
19. Roy, A.L., Meisteremst, M., Pognonec, P., Roeder, R.G., 1991. Cooperative interaction of an initiator-binding transcription factor and the helix-loop-helix activator USF. Nature 354, 245-248.
20. Ruan, Y., Strancy, D.C., 1994. In vitro transcription from the Nectria haematococca PDA1 promoter in a homologus extract reflects in vivo pisatin-responsive regulation. Curr. Genet. 27, 46-53.
21. Sachay, D., Hudspeth, D., Nadler, S., Hudspeth, M., 1993. Oomycete mt DNA: Phytophthora genes for cytochrome c oxidase use an unmodified genetic code and encode proteins most similar to those of plants. Exp. Mycol. 17, 7-23.
22. Sawadogo, M., Van Dyke, M.W., Gregor, P.D., Roeder, R.G., 1988. Multiple forms of the human gene-specific transcription factor USF: 1. complete purification and identification of USF from HeLa cell nuclei. J. Biol. Chem. 263, 11985-11993.
23. Seto, E., Shi, Y., Shenk, T., 1991. YY1 is an initiator sequence binding protein that directs and activates transcription in vitro. Nature 354, 241-245.
24. Smale, S.T., Baltimore, D., 1989. The 'initiator' as a transcription control element. Cell 57, 103-113.
25. Smale, ST., Schmide, M., Burke, A., Baltimore, D., 1990. Transcriptional activation of Spl as through TATA or initiator: specific requirement for mammalian transcription factorIID. Proc. Natl. Acad. Sci. USA 87, 4509-4513.
26. Unkles, S., 1992. Gene organization in industrial filamentous fungi. In: Kinghorn, J., Turner, G. (Eds.), Applied Molecular Genetics of Filamentous Fungi. Blackie Academic and Professional, Glasgow, pp. 28-53.