Implications of RNA structure on the annealing of a potent antisense RNA directed against the human immunodeficiency virus type 1

Biochemistry

Volumn 36, Issue 42, 1997, Pages 12711-12721

  Eckardt, Sigrid ^a   Romby, Pascale ^b   Sczakiel, Georg ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; VIRUS RNA;

ARTICLE; COMPUTER ANALYSIS; GENE EXPRESSION REGULATION; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; KINETICS; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE; STRUCTURE ANALYSIS; VIRUS REPLICATION;

ANTI-HIV AGENTS; BASE SEQUENCE; CELLS, CULTURED; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HIV-1; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MUTAGENESIS, SITE-DIRECTED; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; OLIGORIBONUCLEOTIDES; RIBONUCLEASE H, CALF THYMUS; RIBONUCLEASE T1; RNA, ANTISENSE; RNA, VIRAL; SOFTWARE; THERMODYNAMICS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0030660155     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9707234     Document Type: Article

References (38)

1. Auron, P. E., Weber, L. D., & Rich, A. (1982) Biochemistry 21, 4700.
2. Beijer, B., Sulston, I., Sproat, B. S., Rider, P., Lamond, A. I., & Neuner, P. (1990) Nucleic Acids Res. 18, 5143.
3. Brunel, C., Romby, P., Westhof, E., Ehresmann, C., & Ehresmann, B. (1991) J. Mol. Biol. 221, 293.
4. Case, C. C., Roels, S. M., Jensen, P. D., Lee, J., Kleckner, N., & Simons, R. W. (1989) EMBO J. 8, 4297.
5. Crooke, S. T., Lemonidis, K. M., Neilson, L., Griffey, R., Lesnik, E. A., & Monia, B. P. (1995) Biochem. J. 312, 599.
6. Devereux, J., Haeberli, P., & Smithies, O. (1984) Nucleic Acids Res. 12, 387.
7. Donis-Keller, H. (1979) Nucleic Acids Res. 7, 179.
8. Duroux, I., Godard, G., Boidot Forget, M., Schwab, G., Hélène, C., & Saison Behmoaras, T. (1995) Nucleic Acids Res. 23, 3411.
9. Eguchi, Y., & Tomizawa, J. (1990) Cell 60, 199.
10. Eguchi, Y., & Tomizawa, J. (1991) J. Mol. Biol. 220, 831.
11. Eguchi, Y., Itoh, T., & Tomizawa, J. (1991) Annu. Rev. Biochem. 60, 631.
12. Ehresmann, C., Baudin, F., Mougel, M., Romby, P., Ebel, J. P., & Ehresmann, B. (1987) Nucleic Acids Res. 15, 9109.
13. Erickson, R. P., & Izant, J. G., Eds. (1992) Gene Regulation: Biology of Antisense DNA and RNA, Raven Press, New York.
14. Gornicki, P., Baudin, F., Romby, P., Wiewiorowski, M., Kryzosiak, W., Ebel, J. P., Ehresmann, C., & Ehresmann, B. (1989) J. Biomol. Struct. Dyn. 6, 971.
15. Hjalt, T., & Wagner, E. G. (1992) Nucleic Acids Res. 20, 6723.
16. Hjalt, T. A., & Wagner, E. G. (1995) Nucleic Acids Res. 23, 571.
17. Homann, M. (1995) Ph.D. Thesis, University of Heidelberg, Heidelberg, Germany.
18. Homann, M., Rittner, K., & Sczakiel, G. (1993) J. Mol. Biol. 233, 7.
19. Homann, M., Nedbal, W., & Sczakiel, G. (1996) Nucleic Acids Res. 24, 4395.
20. Jain, C. (1995) J. Mol. Biol. 246, 585.
21. Junker, U., Rittner, K., Homann, M., Bevec, D., Bohnlein, E., & Sczakiel, G. (1994) Antisense Res. Dev. 4, 165.
22. Kittle, J. D., Simons, R. W., Lee, J., & Kleckner, N. (1989) J. Mol. Biol. 210, 561.
23. Kronenwett, R., Haas, R., & Sczakiel, G. (1996) J. Mol. Biol. 259, 632.
24. LeCuyer, K., & Crothers, D. M. (1993) Biochemistry 32, 5301.
25. Lowman, H. B., & Draper, D. E. (1986) J. Biol. Chem. 261, 5396.
26. Nedbal, W., Frey, M., Willemann, B., Zentgraf, H., & Sczakiel, G. (1997) J. Mol. Biol. 266, 677.
27. Öhman, M., & Wagner, E. G. (1989) Nucleic Acids Res. 17, 2557.
28. Persson, C., Wagner, E. G., & Nordstrom, K. (1990) EMBO J. 9, 3777.
29. Pyle, A. M., Mc Swiggen, J. A. Cech, T. R. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 8187.
30. Riesner, D., Henco, C., & Steger, G. (1991) in Advances in Electrophoresis, Vol. 4, pp 69-250, VCH, Weinheim, Germany.
31. Rittner, K., & Sczakiel, G. (1991) Nucleic Acids Res. 19, 1421.
32. Rittner, K., Burmester, C., & Sczakiel, G. (1993) Nucleic Acids Res. 21, 1381.
33. Rosenbaum, V., Klahn, T., Lundberg, U., Holmgren, E., von Gabain, A., & Riesner, D. (1993) J. Mol. Biol. 229, 656.
34. Sczakiel, G., Homann, M., & Rittner, K. (1993) Antisense Res. Dev. 3, 45.
35. Senger, M., Glatting, K. H., Ritter, O., & Suhai, S. (1995) Comput. Methods Programs Biomed. 46, 131.
36. Simons, R. W., & Kleckner, N. (1988) Annu. Rev. Genet. 22, 567.
37. Thisted, T., Sorensen, N. S., Wagner, E. G., & Gerdes, K. (1994) EMBO J. 13, 1960.
38. Wagner, E. G., & Simons, R. W. (1994) Annu. Rev. Microbiol. 48, 713.