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Volumn 10, Issue 2, 1997, Pages 217-231

The ratio of replacement to silent divergence and tests of neutrality

Author keywords

HIV 1 envelope gene; Hypervariable sites; Replacement substitutions; Silent substitutions; Strict neutrality

Indexed keywords


EID: 0030656488     PISSN: 1010061X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s000360050019     Document Type: Article
Times cited : (19)

References (26)
  • 2
    • 0004452894 scopus 로고
    • Molecular evolution and the neutral allele theory
    • Gillespie, J. H. 1987. Molecular evolution and the neutral allele theory. Oxf. Surv. Evol. Biol. 4: 10-37.
    • (1987) Oxf. Surv. Evol. Biol. , vol.4 , pp. 10-37
    • Gillespie, J.H.1
  • 3
    • 0024767023 scopus 로고
    • Lineage effects and the index of dispersion of molecular evolution
    • Gillespie, J. H. 1989. Lineage effects and the index of dispersion of molecular evolution. Mol. Biol. Evol. 6: 636-647.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 636-647
    • Gillespie, J.H.1
  • 4
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N. and Z. Yang. 1995. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11 (5): 715-724.
    • (1995) Mol. Biol. Evol. , vol.11 , Issue.5 , pp. 715-724
    • Goldman, N.1    Yang, Z.2
  • 5
    • 0343057209 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., H. Kishino and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 26: 132-147.
    • (1985) J. Mol. Evol. , vol.26 , pp. 132-147
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 6
    • 0028922694 scopus 로고
    • A maximun-likelihood approach to analyzing nonoverlapping and overlapping reading frames
    • Hein, J. and J. Stoevlbaek. 1995. A maximun-likelihood approach to analyzing nonoverlapping and overlapping reading frames. J. Mol. Evol. 40: 181-189.
    • (1995) J. Mol. Evol. , vol.40 , pp. 181-189
    • Hein, J.1    Stoevlbaek, J.2
  • 7
    • 0023339852 scopus 로고
    • A test for neutral molecular evolution based on nucleotide data
    • Hudson, R. R., M. Kreitman and M. Aguadé. 1987. A test for neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 8
    • 0026575161 scopus 로고
    • Maintenance of MHC polymorphism
    • Hughes, A. L. and M. Nei. 1992. Maintenance of MHC polymorphism. Nature. 355: 402-403.
    • (1992) Nature , vol.355 , pp. 402-403
    • Hughes, A.L.1    Nei, M.2
  • 9
    • 0025061094 scopus 로고
    • Limitations of the evolutionary parsimony of phylogenetic analysis
    • Jin, L. and M. Nei. 1990. Limitations of the evolutionary parsimony of phylogenetic analysis. Mol. Biol. Evol. 7: 82-102.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 82-102
    • Jin, L.1    Nei, M.2
  • 10
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro (Ed.), H. N. Academic Press, New York
    • Jukes, T. H. and C. R. Cantor. 1969. Evolution of protein molecules, pp 21-132. In Munro (Ed.), Mammalian Protein Metabolism III. H. N. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism III , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 11
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura, M. 1962. On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 12
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. 1968. Evolutionary rate at the molecular level. Nature 217: 624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 14
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li, W.-H.1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36: 96-99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.-H.1
  • 15
    • 0026428610 scopus 로고
    • Adaptive evolution in the Adh locus in Drosophila
    • MacDonald, J. H. and M. Kreitman. 1991. Adaptive evolution in the Adh locus in Drosophila. Nature 351: 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • MacDonald, J.H.1    Kreitman, M.2
  • 16
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • Muse, S. V. and B. S. Gaut. 1995. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol. Biol. Evol. 11 (5): 715-724.
    • (1995) Mol. Biol. Evol. , vol.11 , Issue.5 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 18
    • 0017068716 scopus 로고
    • Empirical relationship between the number of nucleotide substitutions and interspecific identity of amino acid sequences in some proteins
    • Nei, M. and R. Chakraborty. 1976. Empirical relationship between the number of nucleotide substitutions and interspecific identity of amino acid sequences in some proteins. J. Mol. Evol. 7: 313-323.
    • (1976) J. Mol. Evol. , vol.7 , pp. 313-323
    • Nei, M.1    Chakraborty, R.2
  • 19
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous substitutions
    • Nei, M. and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 3 (5): 418-426.
    • (1986) J. Mol. Evol. , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 20
    • 0031153858 scopus 로고    scopus 로고
    • Site by site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA
    • In press
    • Nielsen, R. 1997. Site by site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA. Systematic Biology. In press.
    • (1997) Systematic Biology
    • Nielsen, R.1
  • 22
    • 0027433704 scopus 로고
    • How the ratio of nonsynonymous to synonymous psudogene substitutions can be less than one
    • Satta, Y. 1993. How the ratio of nonsynonymous to synonymous psudogene substitutions can be less than one. Immunogenetics 38: 450-454.
    • (1993) Immunogenetics , vol.38 , pp. 450-454
    • Satta, Y.1
  • 23
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phytogeny from DNA sequences when substitution rates differ over sites
    • Yang, Z. 1993. Maximum likelihood estimation of phytogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10: 1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 24
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39: 306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 25
    • 0028813337 scopus 로고
    • A space-time process model for the evolution of DNA sequences
    • Yang, Z. 1995. A space-time process model for the evolution of DNA sequences. Genetics 139: 993-1005.
    • (1995) Genetics , vol.139 , pp. 993-1005
    • Yang, Z.1
  • 26
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang, Z., S. Kumar and M. Nei. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141: 1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.