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Volumn , Issue , 1997, Pages 157-166

The Context-Dependence of Amino Acid Properties

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ITERATIVE METHODS; SOFTWARE TESTING;

EID: 0030628377     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (34)
  • 2
    • 0023305986 scopus 로고
    • Knowledge-based prediction of protein structures and the design of novel molecules
    • Blundell, T.; Sibanda, B.; Sternberg, M.; and Thornton, J. 1987. Knowledge-based prediction of protein structures and the design of novel molecules. Nature 326:347-352.
    • (1987) Nature , vol.326 , pp. 347-352
    • Blundell, T.1    Sibanda, B.2    Sternberg, M.3    Thornton, J.4
  • 3
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three-dimensional structure
    • Bowie, J.; Luthy, R.; and Eisenberg, D. 1991. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253:164-170.
    • (1991) Science , vol.253 , pp. 164-170
    • Bowie, J.1    Luthy, R.2    Eisenberg, D.3
  • 5
    • 0020371598 scopus 로고
    • Structural dependence of amino acid hydrophobicity parameters
    • Charton, M., and Charton, B. 1982. Structural dependence of amino acid hydrophobicity parameters. Journal of Theoretical Biology 99:629-664.
    • (1982) Journal of Theoretical Biology , vol.99 , pp. 629-664
    • Charton, M.1    Charton, B.2
  • 6
    • 0016606973 scopus 로고
    • Structural invariants in protein folding
    • Chothia, C. 1975. Structural invariants in protein folding. Nature 254:304-308.
    • (1975) Nature , vol.254 , pp. 304-308
    • Chothia, C.1
  • 7
    • 0017187836 scopus 로고
    • The nature of the accessible and buried surfaces in proteins
    • Chothia, C. 1976. The nature of the accessible and buried surfaces in proteins. Journal of Molecular Biology 105:1-14.
    • (1976) Journal of Molecular Biology , vol.105 , pp. 1-14
    • Chothia, C.1
  • 8
    • 0024289975 scopus 로고
    • The fourteenth barrel rolls out
    • Chothia, C. 1988. The fourteenth barrel rolls out. Nature 333:598-599.
    • (1988) Nature , vol.333 , pp. 598-599
    • Chothia, C.1
  • 9
    • 0018110116 scopus 로고
    • Prediction of the secondary structure of proteins from their amino acid sequence
    • Chou, P., and Pasman, G. 1978. Prediction of the secondary structure of proteins from their amino acid sequence. Advances in Emymology 47:45-148.
    • (1978) Advances in Emymology , vol.47 , pp. 45-148
    • Chou, P.1    Pasman, G.2
  • 11
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • DayhofF, M., ed.. National Biomedical Research Foundation: Silver Springs, MD
    • Dayhôff, M.; Eck, R.; and Park, C. 1972. A model of evolutionary change in proteins. In DayhofF, M., ed.. Atlas of Protein Sequence and Structure, volume 5. National Biomedical Research Foundation: Silver Springs, MD.
    • (1972) Atlas of Protein Sequence and Structure , vol.5
    • Dayhôff, M.1    Eck, R.2    Park, C.3
  • 12
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • DayhofF, M., ed., (supplement 3). National Biomedical Research Foundation: Silver Springs, MD
    • DayhofF, M.; Schwartz, R.; and Orcutt, B. 1978. A model of evolutionary change in proteins. In DayhofF, M., ed., Atlas of Protein Sequence and Structure, volume 5 (supplement 3). National Biomedical Research Foundation: Silver Springs, MD. 345-358.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , pp. 345-358
    • DayhofF, M.1    Schwartz, R.2    Orcutt, B.3
  • 13
    • 0019858614 scopus 로고
    • Similar amino acid sequences: Chance or common ancestry?
    • Doolittle, R. 1981. Similar amino acid sequences: Chance or common ancestry? Science 214:149-159.
    • (1981) Science , vol.214 , pp. 149-159
    • Doolittle, R.1
  • 14
    • 0030601801 scopus 로고    scopus 로고
    • Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses
    • Goldman, N.; Thorne, J.; and Jones, D. 1996. Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses. Journal of Molecular Biology 263:196-208.
    • (1996) Journal of Molecular Biology , vol.263 , pp. 196-208
    • Goldman, N.1    Thorne, J.2    Jones, D.3
  • 15
    • 0016197604 scopus 로고
    • Amino acid difference formulato help explain protein evolution
    • Grantham, R. 1974. Amino acid difference formulato help explain protein evolution. Science 185:862-864.
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 17
    • 0021931978 scopus 로고
    • Statisitical analysis of the physical properties of the 20 naturally occuring amino acids
    • Kidera, A.; Konishi, Y.; Oka, M.; Ooi, T.; and Scher-aga, H. 1985. Statisitical analysis of the physical properties of the 20 naturally occuring amino acids. Journal of Protein Chemistry 4:23-54.
    • (1985) Journal of Protein Chemistry , vol.4 , pp. 23-54
    • Kidera, A.1    Konishi, Y.2    Oka, M.3    Ooi, T.4    Scher-aga, H.5
  • 18
    • 0017157584 scopus 로고
    • A simplified representation of protein conformations for rapid simulation of protein folding
    • Levitt, M. 1976. A simplified representation of protein conformations for rapid simulation of protein folding. Journal of Molecular Biology 104:59-116.
    • (1976) Journal of Molecular Biology , vol.104 , pp. 59-116
    • Levitt, M.1
  • 19
    • 0023984847 scopus 로고
    • Optimal alignments in linear space
    • Myers, E., and Miller, W. 1988. Optimal alignments in linear space. CA5/05 4:11-17.
    • (1988) CA5/05 , vol.4 , pp. 11-17
    • Myers, E.1    Miller, W.2
  • 20
    • 0024046665 scopus 로고
    • Cluster analysis of amino acid indices for prediction of protein structure and function
    • Nakai, K.; Kidera, A.; and Kanehisa, M. 1988. Cluster analysis of amino acid indices for prediction of protein structure and function. Protein Engineering 2:93-100.
    • (1988) Protein Engineering , vol.2 , pp. 93-100
    • Nakai, K.1    Kidera, A.2    Kanehisa, M.3
  • 21
    • 0015217634 scopus 로고
    • The solubility of amino Eicids and two glycine peptides in aqueous ethanol and dioxane solutions
    • Nozaki, Y., and Tanford, C. 1971. The solubility of amino Eicids and two glycine peptides in aqueous ethanol and dioxane solutions. Journal of Biological Chemistry 246:2211-2217.
    • (1971) Journal of Biological Chemistry , vol.246 , pp. 2211-2217
    • Nozaki, Y.1    Tanford, C.2
  • 22
    • 0027302043 scopus 로고
    • Prediction of protein structure by evaluation of sequence-structure fitness
    • Ouzounis, C; Sander, C; Scharf, M.; and Schneider, R. 1993. Prediction of protein structure by evaluation of sequence-structure fitness. Journal of Molecular Biology 232:805-825.
    • (1993) Journal of Molecular Biology , vol.232 , pp. 805-825
    • Ouzounis, C1    Sander, C2    Scharf, M.3    Schneider, R.4
  • 23
    • 0027062943 scopus 로고
    • Environment-specific amino acid substitution tables: Tertiary templates and prediction of protein folds
    • Overington, J.; Donnelly, D.; Johnson, J.; Sali, A.; cuid Blundell, T. 1992. Environment-specific amino acid substitution tables: Tertiary templates and prediction of protein folds. Protein Science 1:216-226.
    • (1992) Protein Science , vol.1 , pp. 216-226
    • Overington, J.1    Donnelly, D.2    Johnson, J.3    Sali, A.4    cuid Blundell, T.5
  • 24
    • 0026511848 scopus 로고
    • A data bank merging related protein structures and sequences
    • Pascarella, S., and Argos, P. 1992. A data bank merging related protein structures and sequences. Protein Engineering 5:121-137.
    • (1992) Protein Engineering , vol.5 , pp. 121-137
    • Pascarella, S.1    Argos, P.2
  • 25
    • 0019333534 scopus 로고
    • Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins
    • Ponnuswamy, P.; Prabhakaran, M.; and Manavalan, P. 1980. Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins. Biochimica ei Biophysica Acta 623:301-316.
    • (1980) Biochimica ei Biophysica Acta , vol.623 , pp. 301-316
    • Ponnuswamy, P.1    Prabhakaran, M.2    Manavalan, P.3
  • 27
    • 0022412192 scopus 로고
    • Hydrophobicity of amino acid residues in globular proteins
    • Rose, G.; Geselowitz, A.; Glenn, J.; Lee, R.; and Ze-hfus, M. 1985. Hydrophobicity of amino acid residues in globular proteins. Science 229:834-838.
    • (1985) Science , vol.229 , pp. 834-838
    • Rose, G.1    Geselowitz, A.2    Glenn, J.3    Lee, R.4    Ze-hfus, M.5
  • 28
    • 0018524481 scopus 로고
    • Degeneracy of the information contained in amino acid sequences: Evi- dence from overlaid genes
    • Sander, C, and Schulz, G. 1979. Degeneracy of the information contained in amino acid sequences: Evi- dence from overlaid genes. Journal of Molecular Evolution 13:245-252.
    • (1979) Journal of Molecular Evolution , vol.13 , pp. 245-252
    • Sander, C1    Schulz, G.2
  • 30
    • 0025141443 scopus 로고
    • Automatic generation of primary sequence patterns from sets of related protein sequences
    • Smith, R., and Smith, T. 1990. Automatic generation of primary sequence patterns from sets of related protein sequences. Biochemistry 87:118-122.
    • (1990) Biochemistry , vol.87 , pp. 118-122
    • Smith, R.1    Smith, T.2
  • 31
    • 0013965569 scopus 로고
    • Relations between chemical structure and biological activity in peptides
    • Sneath, P. 1966. Relations between chemical structure and biological activity in peptides. Journal of Theoretical Biology 12:157-195.
    • (1966) Journal of Theoretical Biology , vol.12 , pp. 157-195
    • Sneath, P.1
  • 32
    • 0022591495 scopus 로고
    • The classification of amino acid conservation
    • Taylor, W. 1986. The classification of amino acid conservation. Journal of Theoretical Biology 119:205-218.
    • (1986) Journal of Theoretical Biology , vol.119 , pp. 205-218
    • Taylor, W.1
  • 33
    • 0017872911 scopus 로고
    • A survey of amino acid side-chain interactions in 21 proteins
    • Warme, P., and Morgan, R. 1978. A survey of amino acid side-chain interactions in 21 proteins. Journal of Molecular Biology 118:289-304.
    • (1978) Journal of Molecular Biology , vol.118 , pp. 289-304
    • Warme, P.1    Morgan, R.2
  • 34
    • 0014349825 scopus 로고
    • The characterization of amino acid sequences in proteins by statisticaJ methods
    • Zimmerman, J.; Eliezer, N.; and Simha, R. 1968. The characterization of amino acid sequences in proteins by statisticaJ methods. Journal of Theoretical Biology 21:170-201.
    • (1968) Journal of Theoretical Biology , vol.21 , pp. 170-201
    • Zimmerman, J.1    Eliezer, N.2    Simha, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.