Nuclear DNA-binding proteins

Methods in Cell Biology

Volumn , Issue 52, 1997, Pages 439-472

  Kucharczuk, Kristen L ^a   Goldhamer, David J ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; NUCLEAR PROTEIN;

ANIMAL; BIOCHEMISTRY; CULTURE TECHNIQUE; CYTOLOGY; HUMAN; METABOLISM; METHODOLOGY; MUSCLE; REVIEW;

ANIMALS; BIOCHEMISTRY; CELL CULTURE TECHNIQUES; DNA-BINDING PROTEINS; HUMANS; MUSCLES; NUCLEAR PROTEINS;

EID: 0030626597     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0091-679x(08)60391-x     Document Type: Article

References (35)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. S., and Struhl, K. (1995). In "Current Protocols in Molecular Biology" (K. Janssen, ed.). New York: John Wiley & Sons.
2. Blackwell, T. K., and Weintraub, H. (1990). Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection. Science 250, 1104-1110.
3. Buskin, J. N., and Hauschka, S. D. (1989).Identification of a myocyte nuclear factor that binds to the muscle-specific enhancer of the mouse muscle creatine kinase gene. Molecular and Cellular Biology 9, 2627-2640.
4. Cheng, T.-C., Wallace, M. C., Merlie, J. P., and Olson, E. N. (1993). Separable regulatory elements governing myogenin transcription in mouse embryogenesis. Science 261, 215-218.
5. Cserjesi, P., Lilly, B., Bryson, L., Wang, Y., Sassoon, D., and Olson, E. N. (1992). MHox: A mesodermally restricted homeodomain protein that binds an essential site in the muscle creatine kinase enhancer. Devel. 115, 1087-1101.
6. Cserjesi, P., Lilly, B., Hinkley, C., Perry, M., and Olson, E. N. (1994). Homeodomain protein MHox and MADS protein Myocyte Enhancer-binding Factor-2 converge on a common element in the muscle creatine kinase enhancer. J. Biol. Chem. 269, 16740-16745.
7. Davis, R. L., Cheng, P-F., Lassar, A. B., and Weintraub, H. (1990). The Myod DNA binding domain contains a recognition code for muscle-specific gene activation. Cell 60, 733-746.
8. Dent, C. L. and Latchman, D. S. (1993). The DNA mobility shift assay. In "Transcription Factors: A Practical Approach" (D. S. Latchman, ed.), pp. 1-26. New York: Oxford University Press Inc.
9. Dignam, J. D., Lebovitz, R. M., and Roeder, R. G. (1983). Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucl. Acids Res. 11, 1475-1489.
10. Edmondson, D. G., Cheng, T. C., Cserjesi, P., Chakraborty, T., and Olson, E. N. (1992). Analysis of the myogenin promoter reveals an indirect pathway for positive autoregulation mediated by the muscle-specific enhancer factor MEF-2. Mol. Cell. Biol. 12, 3665-3677.
11. Fried, M. and Crothers, D. M. (1981). Equilibrium and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucl. Acids Res. 5, 6505-6525.
12. Garner, M. M., and Revzin, A. (1981). A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system. Nucl. Acids Res. 9, 3047-3060.
13. Goldhamer, D. J., Faerman, A., Shani, M., and Emerson, C. P. Jr. (1992). Regulatory elements that control the lineage-specific expression of myoD. Science 256, 538-542.
14. Goldhamer, D. J., Brunk, B. P., Faerman, A., King, A., Shani, M., and Emerson, C. P. Jr. (1995). Embryonic activation of the myoD gene is regulated by a highly conserved distal control element. Development 121, 637-649.
15. Gossett, L. A., Kelvin, D. J., Sternberg, E. A., and Olson, E. N. (1989). A new myocyte-specific enhancer-binding factor that recognizes a conserved element associated with multiple muscle-specific genes. Mol. Cell. Biol. 9, 5022-5033.
16. Grilli, M., Chiu, J. S., and Lenardo, M. J. (1993). NF-KB and Rel - participants in a multiform transcriptional regulatory system. Int. Rev. Cytol. 143, 1-62.
17. Hasty, P., Bradley, A., Morris, J. H., Edmondson, D. G., Venuti, J. M., Olson, E. N., and Klein, W. H. (1993). Muscle deficiency and neonatal death in mice with a targeted mutation in the myogenin gene. Nature 364, 501-506.
18. Imbalzano, A. N., Zaret, K. S., and Kingston, R. E. (1994). Transcription Factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA. J. Biol. Chem. 269, 8280-8286.
19. Jackson, D. A., Rowader, K. E., Stevens, K., Jiang, C., Milos, P., and Zaret, K. S. (1993). Modulation of liver-specific transcription by interactions between hepatocyte nuclear factor 3 and nuclear factor 1 binding DNA in close apposition. Mol. Cell. Biol. 13, 2401-2410.
20. Jen, Y., Weintraub, H., and Benezra, R. (1992). Overexpression of Id protein inhibits the muscle differentiation program: In vivo association of Id with E2A proteins. Genes and Dev. 6, 1466-1479.
21. Lavoie, B. D., Chan, B. S., Allison, R. G., and Chaconas, G. (1991). Structural aspects of a higher order nucleoprotein complex: Induction of an altered DNA structure at the Mu-host junction of the Mu Type I transpososome. EMBO J. 10, 3051-3059.
22. Lee, T. C., and Schwartz, R. J. (1992). Differential detection of multiple DNA-binding complexes using dissimilar polyanion competitors. Nucl. Acid. Res. 20, 140.
23. Lee, T.-C., Chow, K.-L., Fang, P., and Schwartz, R. J. (1991). Activation of skeletal alpha-actin gene transcription: The cooperative formation of serum response factor-binding complexes over positive cis-acting promoter serum response elements displaces a negative-acting nuclear factor enriched in replicating myoblasts and non-myogenic cells. Mol. Cell. Biol. 11, 5090-5100.
24. Lee, T.-C., Shi, Y., and Schwartz, R. J. (1992). Displacement of BrdUrd-induced YY1 by serum response factor activates skeletal alpha-actin transcription in embryonic myoblasts. Proc. Natl. Acad. Sci. USA 89, 9814-9818.
25. Lichtensteiner, S., Wuarin, J., and Schibler, U. (1987). The interplay of DNA-binding proteins on the promoter of the mouse albumin gene. Cell 51, 963-973.
26. Milos, P. M., and Zaret, K. S. (1992). A ubiquitous factor is required for C/EBP-related proteins to form stable transcription complexes on an albumin promoter segment in vitro. Genes & Dev. 6, 991-1004.
27. Mueller, P. R. and Wold, B. (1989). In vivo footprinting of a muscle specific enhancer by ligation mediated PCR. Science 246, 780-786.
28. Murre, C., McCaw, P. S., Vaessin, H., Caudy, M., Jan, L. Y., Jan, Y. N., Cabrera, C. V., Buskin, J. N., Hauschka, S. D., Lassar, A. B., Weintraub, H., and Baltimore, D. (1989a). Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence. Cell 58, 537-544.
29. Murre, C., McGaw, P. S., and Baltimore, D. (1989b). A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD and myc proteins. Cell 56, 777-783.
30. Nabeshima, Y., Hanaoka, K., Hayasaka, M., Esumi, E., Li, S., Nonaka, I., and Nabeshima, Y. (1993). Myogenin gene disruption results in perinatal lethality because of severe muscle defects. Nature 364, 532-535.
31. Sambrook, I., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual," 2nd Ed. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
32. Singh, H., Clerc, R. G., and LeBowitz, J. H. (1989). Molecular cloning of sequence specific DNA binding proteins using recognition site probes. BioTech. 7, 252-261.
33. Taylor, M. V., Gurdon, J. B., Hopwood, N. D., Towers, N., and Mohun, T. J. (1991). Xenopus embryos contain a somite-specific, MyoD-like protein that binds to a promoter site required for muscle actin expression. Genes & Dev. 5, 1149-1160.
34. Wright, W. E., Binder, M. and Funk, W. (1991). Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site. Mol. Cell Biol. 11, 4104-4110.
35. Zaret, K. S., Milos, P., Lia, M., Bali, D., and Gluecksohn-Waelsch, S, (1992). Selective loss of a DNase I hypersensitive site upstream of the tyrosine aminotransferase gene in mice homozygous for lethal albino deletions. Proc. Nat. Acad. Sci. USA 89, 6540-6544.