1H, 15N and 13C NMR assignments, secondary structure and overall topology of the Escherichia coli GlgS protein

European Journal of Biochemistry

Volumn 246, Issue 2, 1997, Pages 301-310

  Beglova, Natalia ^a   Fischer, Daniela ^b   Hengge Aronis, Regine ^b   Gehring, Kalle ^a  

^a MCGILL UNIVERSITY   (Canada)

^b UNIVERSITY OF KONSTANZ   (Germany)

Author keywords

GlgS protein; Glycogen; Heteronuclear NMR; NMR; Protein structure

Indexed keywords

ARTICLE; ESCHERICHIA COLI; GLYCOGEN SYNTHESIS; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PURIFICATION; PROTEIN STRUCTURE; AMINO ACID SEQUENCE; CHEMISTRY; GEL CHROMATOGRAPHY; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PROTEIN SECONDARY STRUCTURE;

BACTERIAL PROTEIN; CARBON; ESCHERICHIA COLI PROTEIN; GLGS PROTEIN, E COLI; NITROGEN; PROTON; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CARBON ISOTOPES; CHROMATOGRAPHY, GEL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NITROGEN ISOTOPES; PROTEIN STRUCTURE, SECONDARY; PROTONS; RECOMBINANT PROTEINS;

EID: 0030612595     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.t01-1-00301.x     Document Type: Article

References (42)

1. Alonso, M. D., Lomako, J., Lomako, W. M., Whelan, W. J. & Preiss, J. (1994) Properties of carbohydrate-free recombinant glycogenin expressed in an Escherichia coli mutant lacking UDP-glucose pyrophosphorylase activity, FEBS Lett. 352, 222-226.
2. Alonso, M. D., Lomako, J., Lomako, W. M. & Whelan, W. J. (1995a) A new look at the biogenesis of glycogen, FASEB J. 9, 1126-1137.
3. Alonso, M. D., Lomako, J., Lomako, W. M. & Whelan, W. J. (1995b) Catalytic activities of glycogenin additional to autocatalytic self-glucosylation, J. Biol. Chem. 270, 15 315-15 319.
4. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) Basic local alignment search tool, J. Mol. Biol. 215, 403-410.
5. Ardila, F. J. & Tandecarz, J. S. (1992) Potato tuber UDP-glucose:protein transglucosylase catalyzes its own glucosylation, Plant Physiol. 99, 1342-1347.
6. Barengo, R., Flawia, M. & Krisman, C. R. (1975) The initiation of glycogen biosynthesis in Escherichia coli, FEBS Lett. 53, 274-278.
7. Cao, Y., Steinrauf, L. K. & Roach, P. J. (1995) Mechanism of glycogenin self-glucosylation, Arch. Biochem. Biophys. 319, 293-298.
8. Cavanagh, J., Fairbrother, W. J., Palmer, A. G. & Skelton, N. J. (1996) Protein NMK spectroscopy, pp. 175-176, Academic Press, New York.
9. 1H NMR spectra of proteins, Biochemistry 26, 5953-5958.
10. Gehring, K., Williams, P. G., Pelton, J. G., Morimoto, H. & Wemmer, D. E. (1991) Tritium NMR spectroscopy of ligand binding to maltose-binding protein, Biochemistry 30, 5524-5531.
11. Goldraji, A., Miozzo, M. C. & Curtino, J. A. (1995) Glycogen-bound protein in lower eukaryote and protkaryote, Biochem. Mol. Biol. Int. 30, 453-460.
12. Goldraji, A. & Curtino, J. A. (1996) M-glycogenin, the protein moiety of Neurospora crassa proteoglycogen, is an auto- and translucosylating enzyme, Biochem. Biophys. Res. Commun. 227, 909-914.
13. Grzesiek, S. & Bax, A. (1992) Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR, J. Am. Chem. Soc. 114, 6291-6293.
14. 15N-enriched proteins, J. Biomol. NMR 3, 185-204.
15. 2O in protein NMR. Application to sensitivity enhancement and NOE measurement, J. Am. Chem. Soc. 115, 12 593-12 594.
16. Hengge-Aronis, R. & Fischer, D. (1992) Identification and molecular analysis of glgS, a novel growth-phase-regulated and rpoS-dependent gene involved in glycogen synthesis in Escherichia coli, Mol. MicroMol. 6, 1877-1886.
17. Johnson, C. E. & Bovey, F. A. (1958) Calculation of nuclear magnetic resonance spectra of aromatic hydrocarbons, J. Chem. Phys. 29, 1012-1014.
18. Kawaguchi, K., Fox, J., Holmes, E., Boyer, C. & Preiss, J. (1978) De novo synthesis of Escherichia colt glycogen is due to primer associated with glycogen synthase and activation by branching enzyme, Arch. Biochem. Biophys. 190, 385-397.
19. 2O saturation, J. Magn. Reson. A 109, 129-133.
20. Kyte, J. & Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein, J. Mol. Biol. 157, 105-132.
21. Lange, R. & Hengge-Aronis, R. (1991) Identification of a central regulator of stationary- phase gene expression in Escherichia coli, Mol. Microbiol. 5, 49-59.
22. Lange, R. & Hengge-Aronis, R. (1994) The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability, Genes & Dev. 8, 1600-1612.
23. Liu, M. Y., Yang, H. & Romeo, T. (1995) The product of the pleiotropic Escherichia coli gene csrA modulates glycogen biosynthesis via effects on mRNA stability, J. Bacteriol. 177, 2663-2672.
24. 15N NMR study of gramicidine S in water and organic solvents, J. Am. Chem. Soc. 106, 1939-1941.
25. Loewen, P. C. & Hengge-Aronis, R. (1994) The role of the sigma factor σ̀ (katF) in bacterial global regulation, Annu. Rev. Microbiol. 48, 53-80.
26. Lomako, J., Lomako, W. M. & Whelan, W. J. (1995) Glycogen metabolism in quail embryo muscle. The role of the glycogenin primer and the intermediate proglycogen, Eur. J Biochem. 234, 343-349.
27. Mu, J., Cheng, C. & Roach, P. J. (1996) Initiation of glycogen synthesis in yeast - requirement of multiple tyrosine residues for function of the self-glucosylating glg proteins in vivo, J. Biol. Chem. 271, 26 554-26 560.
28. Okita, T. W., Rodriguez, R. L. & Preiss, J. (1981) Biosynthesis of bacterial glycogen: cloning of the glycogen biosynthetic enzyme structural genes of Escherichia coli, J. Biol. Chem. 256, 6944-6952.
29. Preiss, J. & Romeo, T. (1993) Molecular biology and regulatory aspects of glycogen biosynthesis in bacteria, Prog. Nucleic Acid Res. Mol. Biol. 47, 299-329.
30. Rivas, L. A. & Pont Lezica, R. (1987) Synthesis of β-glucans in Prototheca zopfii. Isolation and characterization of the glycoprotein primer, Eur. J. Biochem. 163, 135-140.
31. Rothschild, A., Wald, F. A., Bocca, S. N. & Tandecarz, J. S. (1996) Inhibition of UDP-glucose:protein transglucosylase by a maize endosperm protein factor, Cell. Mol. Biol. 42, 645-651.
32. Singh, D. G., Lomako, J., Lomako, W. M., Whelan, W. J., Meyer, H. E., Serwe, M. & Metzger, J. W. (1995) β-Glucosylarginine: a new glucose-protein bond in a self-glucosylating protein from sweet corn, FEBS Lett. 376, 61-64.
33. Smythe, C., Caudwell, F. B., Ferguson, M. & Cohen, P. (1988) Isolation and structural analysis of a peptide containing the novel tyrosyl-glucose linkage in glycogenin, EMBO J. 7, 2681-2686.
34. Smythe, C. & Cohen, P. (1991) The discovery of glycogenin and the priming mechanism for glycogen biogenesis, Eur. J. Biochem. 200, 625-631.
35. 13C nuclear magnetic resonance chemical shifts, J. Am. Chem. Soc. 113, 5490-5492.
36. Takahara, H. & Matsuda, K. (1977) Biosynthesis of glycogen in Neurospora crassa. Existence of a glucoproteic intermediate in the initiation process, J. Biochem. (Tokyo) 81, 1587-94.
37. 15N-enriched proteins, J. Am. Chem. Soc. 115, 7772-7777.
38. Wilmot, C. M. & Thornton, J. M. (1988) Analysis and prediction of the different types of β-turns in proteins, J. Mol. Biol. 203, 221-232.
39. Wishart, D. S., Sykes, B. D. & Richards, F. M. (1992) The chemical-shift index: a simple method for the assignment of protein secondary structure through NMR spectroscopy, Biochemistry 31, 1647-1651.
40. 13C chemical-shift data, J. Biomol. NMR 4, 171-180.
41. Wüthrich, K. (1986) NMR of protein and nucleic acids, John Wiley, New York.
42. Yang, H., Liu, M. Y. & Romeo, T. (1996) Coordinate genetic regulation of glycogen catabolism and biosynthesis in Escherichia coli via the CsrA gene product, J. Bacteriol. 178, 1012-1017.