The restriction-modification system of Pasteuruella haemolytica is a member of a new family of type I enzymes

Gene

Volumn 178, Issue 1-2, 1996, Pages 89-96

  Highlander, Sarah K ^a   Garza, Orlando ^a,b  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b Edcouch Elsa High School   (United States)

Author keywords

Bacteriophage lambda; Codon usage; Gene expression; Gene transfer; hsd genes; Methylation; Recombinant DNA

Indexed keywords

BACTERIAL ENZYME; ENZYME; LEUKOTOXIN; METHYLTRANSFERASE; PROTEIN SUBUNIT; RECOMBINANT DNA; RESTRICTION ENDONUCLEASE; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; ARTICLE; BACTERIOPHAGE; CODON; CONTROLLED STUDY; DNA CLEAVAGE; ENZYME SUBUNIT; ESCHERICHIA COLI; GENE EXPRESSION; GENE INSERTION; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENE TRANSFER; MANNHEIMIA HAEMOLYTICA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN EXPRESSION; RESTRICTION MAPPING; RESTRICTION MODIFICATION SYSTEM; TRANSCRIPTION REGULATION; TRANSPOSON;

BACTERIA (MICROORGANISMS); BACTERIOPHAGE LAMBDA; BOVINAE; ESCHERICHIA COLI; HAEMOPHILUS INFLUENZAE; MANNHEIMIA HAEMOLYTICA; PASTEURELLA;

EID: 0030608381     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/0378-1119(96)00340-X     Document Type: Article

References (28)

1. Abadjieva, A., Webb, M., Patel, J., Zinkevich, V. and Firman, K. (1993) Deletions within the DNA recognition subunit of M - EcoR 124I that identify a region involved in protein-protein interactions between HsdS and HsdM. J. Mol. Biol. 241, 35-43.
2. Boyer, H.W. (1964) Genetic control of restriction and modification in Escherichia coli. J. Bacteriol. 86, 1652-1660.
3. Briggs, R.E., Tatum, F.M., Casey, T.A. and Frank, G.H. (1994) Characterization of a restriction endonuclease, PhaI, from Pasteurella haemolytica serotype A1 and protection of heterologous DNA by a cloned PhaI methyltransferase gene. Appl. Environ. Microbiol. 60, 2006-2010.
4. Cowan, G.M., Gann, A.A.F. and Murray, N.E. (1989) Conservation of complex DNA recognition domains between families of restriction enzymes. Cell 56, 103-109.
5. Dybvig, K. and Yu, H. (1994) Regulation of a restriction modification system via DNA inversion in Mycoplasma pulmonis. Mol. Microbiol. 12, 547-560.
6. Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.-F., Doughtery, B.A., Merrick, J.M., McKenney, K., Sutton, G., FitzHigh, W., Fields, C., Gocayne, J.D., Scott, J., Shirley, R., Liu, L.-I., Glodek, A., Kelley, J.M., Weidman, J.F., Phillips, C.A., Spriggs, T., Hedblom, E., Cotton, M.D., Utterback, T.R., Hanna, M.C., Nguyen, D.T., Saudek, D.M., Brandon, R.C., Fine, E.D., Fritchman, J.L., Fuhrmann, J.L., Geoghagen, N.S.M., Gnehm, C.L., McDonald, L.A., Small, K.V., Fraser, C.M., Smith, H.O. and Venter, C.L. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science 269, 496-512.
7. Fuller-Pace, F.V., Cowan, G.M. and Murray, N.E. (1985) EcoA and EcoE: alternatives to the EcoK family of type I restriction and modification systems of Escherichia coli. J. Mol. Biol. 186, 65-75.
8. Gorbalenya, A.E. and Koonin, E.V. (1991) Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain. FEBS Lett. 291, 277-281.
9. Heath, J.D., Perkins, J.D., Sharma, B. and Weinstock, G.M. (1992) NotI genomic cleavage map of Escherichia coli K-12 strain MG1655. J. Bacteriol. 174, 558-567.
10. Highlander, S.K., Chidambaram, M., Engler, M.J. and Weinstock, G.M. (1989) DNA sequence of the Pasteurella haemolytica leukotoxin gene cluster. DNA Cell Biol. 8, 15-28.
11. Highlander, S.K., Wickersham, E.A., Garza, O. and Weinstock, G.M. (1993) Expression of the Pasteurella haemolytica leukotoxin is inhibited by a locus that encodes an ATP-binding cassette (ABC) homolog. Infect. Immun. 61, 3942-3951.
12. Lauster, R. (1989) Evolution of type II DNA methyltransferases: a gene duplication model. J. Mol. Biol. 206, 313-321.
13. Lo, R.Y. (1992) An analysis of the codon usage of Pasteurella haemolytica A1. FEMS Microbiol. Lett. 100, 125-131.
14. Martinez, E., Bartolome, B. and de la Cruz, F. (1988) pACYC184-derived cloning vectors containing the multiple cloning site and lacZ alpha reporter gene of pUC8/9 and pUC18/19 plasmids. Gene 68, 159-162.
15. Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
16. Murray, N.E., Daniel, A.S., Cowan, G.M. and Sharp, P.M. (1993) Conservation of motifs within the unusually variable polypeptide sequences of type I restriction and modification genes. Mol. Microbiol. 9, 133-143.
17. Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443-453.
18. Price, C., Pripfl, T. and Bickle, T.A. (1987) EcoR124 and EcoR124/3: the first members of a new family of type I restriction and modification systems. Eur. J. Biochem. 167, 111-115.
19. Sharp, P.M. and Li, W.H. (1987) The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295.
20. Sharp, P.M., Kelleher, J.E., Daniel, A.S., Cowan, G.M. and Murray, N.E. (1992) Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria. Proc. Natl. Acad. Sci. USA 89, 9836-9840.
21. Simons, R.W., Hoopes, B.C., McClure, W.R. and Kleckner, N. (1988) Three promoters near the termini of IS10: pIN, pOUT, and pIII. J. Bacteriol. 34, 673-682.
22. Skrzypek, E. and Piekarowicz, A. (1989) The EcoDXXI restriction and modification system: cloning the genes and homology to type I restriction and modification systems. Plasmid 21, 195-204.
23. Smith, T.F. and Waterman. M.S. (1981) Comparison of bio-sequences. Adv. Appl. Math. 2, 482-489.
24. Stern, A. and Meyer, T.F. (1987) Common mechanism controlling phase and antigenic variation in pathogenic neisseriae. Mol. Microbiol. 1, 5-12.
25. Van Heeswijk, W.C., Rabenberg, M., Westerhoff, H.V. and Kahn, D. (1993) The genes of the glutamine synthetase adenylylation cascade are not regulated by nitrogen in Escherichia coll. Mol. Microbiol. 9, 443-457.
26. Walker, J.E., Saraste, M., Runswick, M.J. and Gay, J.J. (1982) Distantly related sequences in the α-and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1, 945-951.
27. Weiser, J.N., Love, J.M. and Moxon, E.R. (1989) The molecular mechanism of phase variation of H. influenzae lipopolysaccharide. Cell 59, 657-665.
28. Wilson, G.G. (1991) Organization of restriction-modification systems. Nucleic Acids Res. 19, 2539-2566.