메뉴 건너뛰기




Volumn 261, Issue 3, 1996, Pages 357-371

Ribosomal protein L9 interactions with 23 S rRNA: The use of a translational bypass assay to study the effect of amino acid substitutions

Author keywords

23 S rRNA; Gene 60 bypass; Peptidyl tRNA; Ribosomal protein L9; Ribosomal RNA protein interaction

Indexed keywords

NUCLEOTIDE; PEPTIDYLTRANSFERASE; RIBOSOME PROTEIN; RNA 23S;

EID: 0030598966     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0469     Document Type: Article
Times cited : (38)

References (39)
  • 1
    • 0027236794 scopus 로고
    • Structural basis of amino acid alpha helix propensity
    • Blaber, M., Zhang, X. J. & Matthews, B. W. (1993). Structural basis of amino acid alpha helix propensity. Science, 260, 1637-1640.
    • (1993) Science , vol.260 , pp. 1637-1640
    • Blaber, M.1    Zhang, X.J.2    Matthews, B.W.3
  • 2
    • 0017090944 scopus 로고
    • RNA sequences associated with proteins L1, L9 and L5, L18, L25, in the ribonucleoprotein fragments isolated from the 50-S subunit of the Escherichia coli ribosomes
    • Branlant, C., Krol, A., Sriwidada, J. & Brimacombe, R. (1976). RNA sequences associated with proteins L1, L9 and L5, L18, L25, in the ribonucleoprotein fragments isolated from the 50-S subunit of the Escherichia coli ribosomes. Eur. J. Biochem. 70, 483-492.
    • (1976) Eur. J. Biochem. , vol.70 , pp. 483-492
    • Branlant, C.1    Krol, A.2    Sriwidada, J.3    Brimacombe, R.4
  • 4
    • 0022330611 scopus 로고
    • Evidence for functional interaction between domains II and V of 23 S ribosomal RNA from an erithromycin-resistant mutant
    • Douthwaite, S., Prince, J. B. & Noller, H. F. (1985). Evidence for functional interaction between domains II and V of 23 S ribosomal RNA from an erithromycin-resistant mutant. Proc. Natl Acad. Sci. USA, 82, 8330-8334.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 8330-8334
    • Douthwaite, S.1    Prince, J.B.2    Noller, H.F.3
  • 5
    • 0002609465 scopus 로고
    • Structure and function of ribosomal protein-RNA complexes: Thermodynamic studies
    • Hill, W. E., Dahlberg, A., Garrett, R. A., Moore, P. B., Schlessinger, D. & Warner, J. R., eds, ASM, Washington, DC
    • Draper, D. E. (1990). Structure and function of ribosomal protein-RNA complexes: Thermodynamic studies. In The Ribosome: Structure, Function and Evolution (Hill, W. E., Dahlberg, A., Garrett, R. A., Moore, P. B., Schlessinger, D. & Warner, J. R., eds), pp. 160-167, ASM, Washington, DC.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 160-167
    • Draper, D.E.1
  • 6
    • 0024239964 scopus 로고
    • Physical studies of ribosomal protein-RNA interactions
    • Draper, D. E., Deckman, I. C. & Vartikar, J. V. (1988). Physical studies of ribosomal protein-RNA interactions. Methods Enzymol. 164, 203-237.
    • (1988) Methods Enzymol. , vol.164 , pp. 203-237
    • Draper, D.E.1    Deckman, I.C.2    Vartikar, J.V.3
  • 7
    • 0024400128 scopus 로고
    • Structural arrangement of tRNA binding sites on Escherichia coli ribosomes, as revealed from data on affinity labelling with photoreactive tRNA derivatives
    • Graifer, D. M., Babkina, G. T., Matasova, N. B., Vladimirov, S. N., Karpova, G. G. & Vlassov, V. V. (1989). Structural arrangement of tRNA binding sites on Escherichia coli ribosomes, as revealed from data on affinity labelling with photoreactive tRNA derivatives. Biochim. Biophys. Acta, 1008, 146-156.
    • (1989) Biochim. Biophys. Acta , vol.1008 , pp. 146-156
    • Graifer, D.M.1    Babkina, G.T.2    Matasova, N.B.3    Vladimirov, S.N.4    Karpova, G.G.5    Vlassov, V.V.6
  • 8
    • 0028298246 scopus 로고
    • Mutations in the peptidyl transferase region of E. Coli 23 S rRNA affecting translational accuracy
    • Gregory, S. T., Lieberman, K. R. & Dahlberg, A. E. (1994). Mutations in the peptidyl transferase region of E. coli 23 S rRNA affecting translational accuracy. Nucl. Acids Res. 22, 279-284.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 279-284
    • Gregory, S.T.1    Lieberman, K.R.2    Dahlberg, A.E.3
  • 9
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective
    • Gutell, R. R., Larsen, N. & Woese, C. R. (1994). Lessons from an evolving rRNA: 16 S and 23 S rRNA structures from a comparative perspective. Microbiol. Rev. 58, 10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 10
    • 0019508396 scopus 로고
    • Ribosomal components from Escherichia coli. 50 S subunits involved in the reconstitution of peptidyltransferase activity
    • Hampl, H., Schulze, H. & Nierhaus, K. H. (1981). Ribosomal components from Escherichia coli. 50 S subunits involved in the reconstitution of peptidyltransferase activity. J. Biol. Chem. 256, 2284-2288.
    • (1981) J. Biol. Chem. , vol.256 , pp. 2284-2288
    • Hampl, H.1    Schulze, H.2    Nierhaus, K.H.3
  • 11
    • 0029021166 scopus 로고
    • Peptide inhibitors of peptidyltransferase alter the conformation of domains IV and V of the large subunit rRNA: A model for nascent peptide control of translation
    • Harrod, R. & Lovett, P. S. (1995). Peptide inhibitors of peptidyltransferase alter the conformation of domains IV and V of the large subunit rRNA: a model for nascent peptide control of translation. Proc. Natl Acad. Sci. USA, 92, 8650-8654.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 8650-8654
    • Harrod, R.1    Lovett, P.S.2
  • 12
    • 0024252185 scopus 로고
    • Extension inhibition analysis of translation initiation complexes
    • Hartz, D., McPheeters, D. S., Traut, R. & Gold, L. (1988). Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164, 419-425.
    • (1988) Methods Enzymol. , vol.164 , pp. 419-425
    • Hartz, D.1    McPheeters, D.S.2    Traut, R.3    Gold, L.4
  • 13
    • 0028587369 scopus 로고
    • A mutation in ribosomal protein L9 affects ribosomal hopping during translation of gene 60 from bacteriophage T4
    • Herbst, K. L., Nichols, L. M., Gesteland, R. F. & Weiss, R. B. (1994). A mutation in ribosomal protein L9 affects ribosomal hopping during translation of gene 60 from bacteriophage T4. Proc. Natl Acad. Sci. USA, 91, 12525-12529.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 12525-12529
    • Herbst, K.L.1    Nichols, L.M.2    Gesteland, R.F.3    Weiss, R.B.4
  • 14
    • 0023664556 scopus 로고
    • Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes
    • Herold, M. & Nierhaus, K. H. (1987 Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes. J. Biol. Chem. 262, 8826-8833.
    • (1987) J. Biol. Chem. , vol.262 , pp. 8826-8833
    • Herold, M.1    Nierhaus, K.H.2
  • 16
    • 0023909946 scopus 로고
    • A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60
    • Huang, W. M., Ao, S.-Z., Casjens, S., Orlandi, R., Zeikus, R., Weiss, R., Winge, D. & Fang, M. (1988). A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60. Science, 239, 1005-1012.
    • (1988) Science , vol.239 , pp. 1005-1012
    • Huang, W.M.1    Ao, S.-Z.2    Casjens, S.3    Orlandi, R.4    Zeikus, R.5    Weiss, R.6    Winge, D.7    Fang, M.8
  • 17
    • 0030020170 scopus 로고    scopus 로고
    • Mapping the rRNA neighbourhood of the acceptor end of tRNA in the ribosome
    • Joseph, S. & Noller, H. F. (1996). Mapping the rRNA neighbourhood of the acceptor end of tRNA in the ribosome. EMBO J. 15, 910-916.
    • (1996) EMBO J. , vol.15 , pp. 910-916
    • Joseph, S.1    Noller, H.F.2
  • 18
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 19
    • 0025719151 scopus 로고
    • Monoclonal antibodies to Escherichia coli ribosomal proteins L9 and L10
    • Nag, B., Akella, S. S., Cann, P. A., Tewari, D. S., Glitz, D. G. & Traut, R. R. (1991). Monoclonal antibodies to Escherichia coli ribosomal proteins L9 and L10. J. Biol. Chem. 266, 22129-22135.
    • (1991) J. Biol. Chem. , vol.266 , pp. 22129-22135
    • Nag, B.1    Akella, S.S.2    Cann, P.A.3    Tewari, D.S.4    Glitz, D.G.5    Traut, R.R.6
  • 20
    • 0026639881 scopus 로고
    • Unusual resistance of peptidyl transferase to protein extraction procedures
    • Noller, H. F., Hoffarth, V. & Zimniak, L. (1992). Unusual resistance of peptidyl transferase to protein extraction procedures. Science, 256, 1416-1419.
    • (1992) Science , vol.256 , pp. 1416-1419
    • Noller, H.F.1    Hoffarth, V.2    Zimniak, L.3
  • 21
    • 0024790054 scopus 로고
    • RNA hopping: Enhancement by an expanded anticodon
    • O'Connor, M., Gesteland, R. F. & Atkins, J. F. (1989). RNA hopping: enhancement by an expanded anticodon. EMBO J. 8, 4315-4323.
    • (1989) EMBO J. , vol.8 , pp. 4315-4323
    • O'Connor, M.1    Gesteland, R.F.2    Atkins, J.F.3
  • 23
    • 0025646716 scopus 로고
    • Localization of a series of RNA-protein cross-link sites in the 23 S and 5 S ribosomal RNA from Escherichia coli, induced by treatment of 50 S subunits with three different bifunctional reagents
    • Osswald, M., Greuer, B. & Brimacombe, R. (1990). Localization of a series of RNA-protein cross-link sites in the 23 S and 5 S ribosomal RNA from Escherichia coli, induced by treatment of 50 S subunits with three different bifunctional reagents. Nucl. Acids Res. 18, 6755-6760.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 6755-6760
    • Osswald, M.1    Greuer, B.2    Brimacombe, R.3
  • 24
    • 0026073648 scopus 로고
    • Neighbourhood of the central fold of the tRNA molecule bound to the E. Coli ribosome-affinity labeling studies with modified tRNAs carrying photoreactive probes attached to the dihydrouridine loop
    • Podkowinski, J. & Gornicki, P. (1991). Neighbourhood of the central fold of the tRNA molecule bound to the E. coli ribosome-affinity labeling studies with modified tRNAs carrying photoreactive probes attached to the dihydrouridine loop. Nucl. Acids Res. 19, 801-808.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 801-808
    • Podkowinski, J.1    Gornicki, P.2
  • 25
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers, T. & Noller, H. F. (1995). Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA, 1, 194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 26
    • 0028138280 scopus 로고
    • Interactions of a small RNA with antibiotic and RNA ligands of the 30 S subunit
    • Purohit, P. & Stern, S. (1994). Interactions of a small RNA with antibiotic and RNA ligands of the 30 S subunit. Nature, 370, 659-662.
    • (1994) Nature , vol.370 , pp. 659-662
    • Purohit, P.1    Stern, S.2
  • 28
    • 0029444686 scopus 로고
    • The ribosomal environment of tRNA: Crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located in the A, P, or E site
    • Rinke-Appel, J., Jünke, N., Osswald, M. & Brimacombe, R. (1995). The ribosomal environment of tRNA: crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located in the A, P, or E site. RNA, 1, 1018-1028.
    • (1995) RNA , vol.1 , pp. 1018-1028
    • Rinke-Appel, J.1    Jünke, N.2    Osswald, M.3    Brimacombe, R.4
  • 30
    • 0029085929 scopus 로고
    • A base pair between tRNA and 23 S rRNA in the peptidyl transferase centre of the ribosome
    • Samaha, R. R., Green, R. & Noller H. F. (1995). A base pair between tRNA and 23 S rRNA in the peptidyl transferase centre of the ribosome. Nature, 377, 309-314.
    • (1995) Nature , vol.377 , pp. 309-314
    • Samaha, R.R.1    Green, R.2    Noller, H.F.3
  • 32
    • 0039425732 scopus 로고
    • Location of eight ribosomal proteins on the surface of the 50 subunit from Escherichia coli
    • Stöffler-Meilicke, M., Noah, M. & Stöffler, G. (1983). Location of eight ribosomal proteins on the surface of the 50 subunit from Escherichia coli. Proc. Natl Acad. Sci. USA, 80, 6780-6784.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 6780-6784
    • Stöffler-Meilicke, M.1    Noah, M.2    Stöffler, G.3
  • 33
    • 0028330508 scopus 로고
    • Visualization of protein-nucleic acid interactions involved in the in vitro assembly of the Escherichia coli 50 S ribosomal subunit
    • Tumminia, S. J., Hellmann, W., Wall, J. S. & Boublik, M. (1994). Visualization of protein-nucleic acid interactions involved in the in vitro assembly of the Escherichia coli 50 S ribosomal subunit. J. Mol. Biol. 235, 1239-1250.
    • (1994) J. Mol. Biol. , vol.235 , pp. 1239-1250
    • Tumminia, S.J.1    Hellmann, W.2    Wall, J.S.3    Boublik, M.4
  • 34
    • 0024434016 scopus 로고
    • S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region
    • Vartikar, J. V. & Draper, D. E. (1989). S4-16 S ribosomal RNA complex. Binding constant measurements and specific recognition of a 460-nucleotide region. J. Mol. Biol. 209, 221-234.
    • (1989) J. Mol. Biol. , vol.209 , pp. 221-234
    • Vartikar, J.V.1    Draper, D.E.2
  • 35
    • 0024563905 scopus 로고
    • Comparative cross-linking study on the 50 S ribosomal subunit from Escherichia coli
    • Walleczek, J., Martin, T., Redl, B., Stöffler-Meilicke, M. & Stöffler, G. (1989). Comparative cross-linking study on the 50 S ribosomal subunit from Escherichia coli. Biochemistry, 28, 4099-4105.
    • (1989) Biochemistry , vol.28 , pp. 4099-4105
    • Walleczek, J.1    Martin, T.2    Redl, B.3    Stöffler-Meilicke, M.4    Stöffler, G.5
  • 36
    • 0023519951 scopus 로고
    • Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting
    • Weiss, R. B., Dunn, D. M., Atkins, J. F. & Gesteland, R. F. (1987). Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting. Cold Spring Harbor Symp. Quant. Biol. 52, 687-693.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 687-693
    • Weiss, R.B.1    Dunn, D.M.2    Atkins, J.F.3    Gesteland, R.F.4
  • 37
    • 0025312745 scopus 로고
    • A nascent peptide is required for ribosomal bypass of the coding gap in bacteriophage T4 gene 60
    • Weiss, R. B., Huang, W. M. & Dunn, D. M. (1990). A nascent peptide is required for ribosomal bypass of the coding gap in bacteriophage T4 gene 60. Cell, 62, 117-126.
    • (1990) Cell , vol.62 , pp. 117-126
    • Weiss, R.B.1    Huang, W.M.2    Dunn, D.M.3
  • 38
    • 0020016078 scopus 로고
    • Components of bacterial ribosomes
    • Wittmann, H. G. (1982). Components of bacterial ribosomes. Annu. Rev. Biochem. 51, 155-182.
    • (1982) Annu. Rev. Biochem. , vol.51 , pp. 155-182
    • Wittmann, H.G.1
  • 39
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., Vieira, J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.