-
1
-
-
0027957778
-
Identification of a small RNA that interacts with the 5′ splice site of the Trypanosoma brucei spliced leader RNA in vivo
-
[1] Watkins, K.P., Dungan, J.M. and Agabian, N. (1994) Identification of a small RNA that interacts with the 5′ splice site of the Trypanosoma brucei spliced leader RNA in vivo. Cell 76, 171-182.
-
(1994)
Cell
, vol.76
, pp. 171-182
-
-
Watkins, K.P.1
Dungan, J.M.2
Agabian, N.3
-
2
-
-
0025339650
-
Trans splicing of nuclear pre-mRNAs
-
[2] Agabian, N. (1990) Trans splicing of nuclear pre-mRNAs. Cell 61, 1157-1160.
-
(1990)
Cell
, vol.61
, pp. 1157-1160
-
-
Agabian, N.1
-
3
-
-
0027441281
-
Trans-splicing of pre-mRNA in plants, animals and protists
-
[3] Bonen, L. (1993) Trans-splicing of pre-mRNA in plants, animals and protists. FASEB J. 7, 40-46.
-
(1993)
FASEB J.
, vol.7
, pp. 40-46
-
-
Bonen, L.1
-
4
-
-
0023663094
-
Inactivation of transcription by UV irradiation of T. brucei provides evidence for a multicistronic transcription unit including a VSG gene
-
[4] Johnson, P.J., Kooter, J.M. and Borst, P. (1987) Inactivation of transcription by UV irradiation of T. brucei provides evidence for a multicistronic transcription unit including a VSG gene. Cell 51, 273-281.
-
(1987)
Cell
, vol.51
, pp. 273-281
-
-
Johnson, P.J.1
Kooter, J.M.2
Borst, P.3
-
5
-
-
0023680123
-
Polycistronic transcripts in trypanosomes and their accumulation during heat shock: Evidence for a precursor role in mRNA synthesis
-
[5] Muhich, M.L. and Boothroyd, J.C. (1988) Polycistronic transcripts in trypanosomes and their accumulation during heat shock: evidence for a precursor role in mRNA synthesis. Mol. Cell. Biol. 8, 3837-3846.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 3837-3846
-
-
Muhich, M.L.1
Boothroyd, J.C.2
-
6
-
-
0011835838
-
Polygene transcripts are precursors to calmodulin mRNAs in trypanosomes
-
[6] Tschudi, C. and Ullu, E. (1988) Polygene transcripts are precursors to calmodulin mRNAs in trypanosomes. EMBO J. 7, 455-463.
-
(1988)
EMBO J.
, vol.7
, pp. 455-463
-
-
Tschudi, C.1
Ullu, E.2
-
7
-
-
0022975688
-
Identification of a novel y branch structure as an intermediate in trypanosome mRNA processing: Evidence for trans splicing
-
[7] Murphy, W.J., Watkins, K.P. and Agabian, N. (1986) Identification of a novel Y branch structure as an intermediate in trypanosome mRNA processing: evidence for trans splicing. Cell 47, 517-525.
-
(1986)
Cell
, vol.47
, pp. 517-525
-
-
Murphy, W.J.1
Watkins, K.P.2
Agabian, N.3
-
8
-
-
0022981733
-
Evidence for trans splicing in trypanosomes
-
[8] Sutton, R.E. and Boothroyd, J.C. (1986) Evidence for trans splicing in trypanosomes. Cell 47, 527-535.
-
(1986)
Cell
, vol.47
, pp. 527-535
-
-
Sutton, R.E.1
Boothroyd, J.C.2
-
9
-
-
0023321254
-
In vivo labelling of intermediates in the discontinuous synthesis of mRNAs in Trypanosoma brucei
-
[9] Laird, P.W., Zomerdijk, J.C. Borst, K.D. de and Borst, P. (1987) In vivo labelling of intermediates in the discontinuous synthesis of mRNAs in Trypanosoma brucei. EMBO J. 6, 1055-1062.
-
(1987)
EMBO J.
, vol.6
, pp. 1055-1062
-
-
Laird, P.W.1
Zomerdijk, J.C.2
De Borst, K.D.3
Borst, P.4
-
10
-
-
0025280085
-
Destruction of U2, U4, or U6 small nuclear RNA blocks trans splicing in trypanosome cells
-
[10] Tschudi, C. and Ullu, E. (1990) Destruction of U2, U4, or U6 small nuclear RNA blocks trans splicing in trypanosome cells. Cell 61, 459-466.
-
(1990)
Cell
, vol.61
, pp. 459-466
-
-
Tschudi, C.1
Ullu, E.2
-
11
-
-
0025988382
-
In vivo UV cross-linking of U snRNAs that participate in trypanosome trans-splicing
-
[11] Watkins, K.P. and Agabian, N. (1991) In vivo UV cross-linking of U snRNAs that participate in trypanosome trans-splicing. Genes Dev. 5, 1859-1869.
-
(1991)
Genes Dev.
, vol.5
, pp. 1859-1869
-
-
Watkins, K.P.1
Agabian, N.2
-
12
-
-
0025004279
-
Spliced leader RNA sequences can substitute for the essential 5′ end of U1 RNA during splicing in a mammalian in vitro system
-
[12] Bruzik, J.P. and Steitz, J.A. (1990) Spliced leader RNA sequences can substitute for the essential 5′ end of U1 RNA during splicing in a mammalian in vitro system. Cell 62, 889-899.
-
(1990)
Cell
, vol.62
, pp. 889-899
-
-
Bruzik, J.P.1
Steitz, J.A.2
-
13
-
-
0026663296
-
Splicing takes a holiday
-
[13] Steitz, J.A. (1992) Splicing takes a holiday. Science 257, 888-889.
-
(1992)
Science
, vol.257
, pp. 888-889
-
-
Steitz, J.A.1
-
14
-
-
0029762873
-
Evidence for the presence of a small U5-like RNA in active trans-spliceosomes of Trypanosoma brucei
-
[14] Dungan, J.M., Watkins, K.P. and Agabian, N. (1996) Evidence for the presence of a small U5-like RNA in active trans-spliceosomes of Trypanosoma brucei. EMBO J. 15, 4016-4029.
-
(1996)
EMBO J.
, vol.15
, pp. 4016-4029
-
-
Dungan, J.M.1
Watkins, K.P.2
Agabian, N.3
-
15
-
-
0027059033
-
Site-specific cross-linking of mammalian U5 snRNP to the 5′ splice site before the first step of pre-mRNA splicing
-
[15] Wyatt, J.R., Sontheimer, E.J. and Steitz, J.A. (1992) Site-specific cross-linking of mammalian U5 snRNP to the 5′ splice site before the first step of pre-mRNA splicing. Genes Dev. 6, 2542-2553.
-
(1992)
Genes Dev.
, vol.6
, pp. 2542-2553
-
-
Wyatt, J.R.1
Sontheimer, E.J.2
Steitz, J.A.3
-
16
-
-
0026670431
-
Interactions of small nuclear RNA's with precursor messenger RNA during in vitro splicing
-
[16] Wassarman, D.A. and Steitz, J.A. (1992) Interactions of small nuclear RNA's with precursor messenger RNA during in vitro splicing. Science 257, 1918-1925.
-
(1992)
Science
, vol.257
, pp. 1918-1925
-
-
Wassarman, D.A.1
Steitz, J.A.2
-
17
-
-
0027207237
-
Uncoupling two functions of the U1 small nuclear ribonucleoprotein particle during in vitro splicing
-
[17] Seiwert, S.D. and Steitz, J.A. (1993) Uncoupling two functions of the U1 small nuclear ribonucleoprotein particle during in vitro splicing. Mol. Cell. Biol. 13, 3134-3145.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 3134-3145
-
-
Seiwert, S.D.1
Steitz, J.A.2
-
18
-
-
0028097555
-
Spliced leader-associated RNA of trypanosomes. Sequence conservation and association with protein components common to trans-spliceosomal ribonucleoproteins
-
[18] Palfi, Z., Xu, G.L. and Bindereif, A. (1994) Spliced leader-associated RNA of trypanosomes. Sequence conservation and association with protein components common to trans-spliceosomal ribonucleoproteins. J. Biol. Chem. 269, 30620-30625.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30620-30625
-
-
Palfi, Z.1
Xu, G.L.2
Bindereif, A.3
-
19
-
-
0011478006
-
The IsTat serodeme of T. brucei: Development of a new T. brucei serodeme and characterization of early variants
-
[19] Stuart, K., Gobright, E., Jenni, L., Milhausen, M., Thomashow, L. and Agabian, N. (1984) The IsTat serodeme of T. brucei: development of a new T. brucei serodeme and characterization of early variants. J. Parasitol. 51, 408-417.
-
(1984)
J. Parasitol.
, vol.51
, pp. 408-417
-
-
Stuart, K.1
Gobright, E.2
Jenni, L.3
Milhausen, M.4
Thomashow, L.5
Agabian, N.6
-
20
-
-
0004136246
-
-
Cold Sping Harbor Laboratories, Cold Spings Harbor, New York
-
[20] Maniatis, T., Fritsch, E.F. and Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual, Cold Sping Harbor Laboratories, Cold Spings Harbor, New York.
-
(1982)
Molecular Cloning: A Laboratory Manual
-
-
Maniatis, T.1
Fritsch, E.F.2
Sambrook, J.3
-
21
-
-
0004270170
-
-
Greene Publishing Associates and Wiley Interscience, New York
-
[21] Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl K. (editors) (1994) Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, New York.
-
(1994)
Current Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
22
-
-
0024551373
-
Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. Brucei: Identification of the U2, U4, and U6 RNA analogs
-
[22] Mottram, J., Perry, K.L., Lizardi, P.M., Luhrmann, R., Agabian, N. and Nelson, R.G. (1989) Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. brucei: Identification of the U2, U4, and U6 RNA analogs. Mol. Cell. Biol. 9, 1212-1223.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 1212-1223
-
-
Mottram, J.1
Perry, K.L.2
Lizardi, P.M.3
Luhrmann, R.4
Agabian, N.5
Nelson, R.G.6
-
23
-
-
0018846636
-
Sequencing end-labeled DNA with base-specific chemical cleavage
-
Academic Press, New York
-
[23] Maxam, A.M. and Gilbert, W. (1980) Sequencing end-labeled DNA with base-specific chemical cleavage. In: Methods in Enzymology; Nucleic Acids, Part I, Academic Press, New York.
-
(1980)
Methods in Enzymology; Nucleic Acids
, Issue.PART I
-
-
Maxam, A.M.1
Gilbert, W.2
-
24
-
-
0025315262
-
Permeable trypanosome cells as a model system for transcription and trans-splicing
-
[24] Ullu, E. and Tschudi, C. (1990) Permeable trypanosome cells as a model system for transcription and trans-splicing. Nucleic Acids Res. 18, 3319-3326.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3319-3326
-
-
Ullu, E.1
Tschudi, C.2
-
25
-
-
0021141004
-
Complete nucleotide sequence of an unusual mobile element from Trypanosoma brucei
-
[25] Hasan, G., Turner, M. and Cordingley, J. (1984) Complete nucleotide sequence of an unusual mobile element from Trypanosoma brucei. Cell 37, 333-341.
-
(1984)
Cell
, vol.37
, pp. 333-341
-
-
Hasan, G.1
Turner, M.2
Cordingley, J.3
-
26
-
-
0020659292
-
Tubulin genes are tandemly linked and clustered in the genome of Trypanosoma brucei
-
[26] Thomashow, L.S., Milhausen, M., Rutter, W.J. and Agabian, N. (1983) Tubulin genes are tandemly linked and clustered in the genome of Trypanosoma brucei. Cell 32, 35-43.
-
(1983)
Cell
, vol.32
, pp. 35-43
-
-
Thomashow, L.S.1
Milhausen, M.2
Rutter, W.J.3
Agabian, N.4
-
27
-
-
0021807077
-
Characterization of the Trypanosoma brucei 5S ribosomal RNA gene and transcript: The 5S rRNA is a spliced-leader-independent species
-
[27] Lenardo, M.J., Dorfman, D.M., Reddy, L.V. and Donelson, J.E. (1985) Characterization of the Trypanosoma brucei 5S ribosomal RNA gene and transcript: the 5S rRNA is a spliced-leader-independent species. Gene 35, 131-141.
-
(1985)
Gene
, vol.35
, pp. 131-141
-
-
Lenardo, M.J.1
Dorfman, D.M.2
Reddy, L.V.3
Donelson, J.E.4
-
28
-
-
0025302161
-
Isolation of distinct small ribonucleoprotein particles containing the spliced leader and U2 RNAs of Trypanosoma brucei
-
[28] Michaeli, S., Roberts, T.G., Watkins, K.P. and Agabian, N. (1990) Isolation of distinct small ribonucleoprotein particles containing the spliced leader and U2 RNAs of Trypanosoma brucei. J. Biol. Chem. 265, 10582-10588.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 10582-10588
-
-
Michaeli, S.1
Roberts, T.G.2
Watkins, K.P.3
Agabian, N.4
-
29
-
-
0020841302
-
Sequences homologous to the variant antigen mRNA spliced leader are located in tandem repeats and variable orphons in Trypanosoma brucei
-
[29] Nelson, R.G., Parsons, M., Barr, P.J., Stuart, K., Selkirk, M. and Agabian, N. (1983) Sequences homologous to the variant antigen mRNA spliced leader are located in tandem repeats and variable orphons in Trypanosoma brucei. Cell 34, 901-909.
-
(1983)
Cell
, vol.34
, pp. 901-909
-
-
Nelson, R.G.1
Parsons, M.2
Barr, P.J.3
Stuart, K.4
Selkirk, M.5
Agabian, N.6
-
30
-
-
0020616957
-
Tandem repetition of the 5′ mini-exon of variant surface glycoprotein genes: A multiple promoter for VSG gene transcription
-
[30] De Lange, T., Liu, A.Y.C., Van der Ploeg, L.H.T., Borst, P., Tromp, M.C. and Van Boom, J.H. (1983) Tandem repetition of the 5′ mini-exon of variant surface glycoprotein genes: a multiple promoter for VSG gene transcription. Cell 34, 891-900.
-
(1983)
Cell
, vol.34
, pp. 891-900
-
-
De Lange, T.1
Liu, A.Y.C.2
Van Der Ploeg, L.H.T.3
Borst, P.4
Tromp, M.C.5
Van Boom, J.H.6
-
31
-
-
0011427825
-
-
manuscript in preparation
-
[31] Sturm, N., Yee, B., Roberts, T.G., Agabian, N. and Campbell, D.A. (manuscript in preparation).
-
-
-
Sturm, N.1
Yee, B.2
Roberts, T.G.3
Agabian, N.4
Campbell, D.A.5
-
32
-
-
0025183708
-
Basic local alignment search tool
-
[32] Altschul, S.F., Gish, W., Miller, W., Meyers, E.W. and Lipman, D.J. (1990) Basic Local Alignment Search Tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Meyers, E.W.4
Lipman, D.J.5
-
33
-
-
0003648101
-
-
September 1994, Genetics Computer Group, Madison, Wisconsin
-
[33] Edelman, I., Olson, S. and Devereux, J. (editors) (1994) Program manual for the Wisconsin Package, Version 8, September 1994, Genetics Computer Group, Madison, Wisconsin.
-
(1994)
Program Manual for the Wisconsin Package, Version 8
-
-
Edelman, I.1
Olson, S.2
Devereux, J.3
-
34
-
-
0028329601
-
RNA polymerase III-mediated transcription of the trypanosome U2 small nuclear RNA gene is controlled by both intragenic and extragenic regulatory elements
-
[34] Fantoni, A., Dare, O.A. and Tschudi, C. (1994) RNA polymerase III-mediated transcription of the trypanosome U2 small nuclear RNA gene is controlled by both intragenic and extragenic regulatory elements. Mol. Cell. Biol. 14, 2021-2028.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 2021-2028
-
-
Fantoni, A.1
Dare, O.A.2
Tschudi, C.3
-
35
-
-
0028001399
-
Upstream tRNA genes are essential for expression of small nuclear and cytoplastnic RNA genes in trypanosomes
-
[35] Nakaar, V., Dare, A.O., Hong, D., Ullu, E. and Tschudi, C. (1994) Upstream tRNA genes are essential for expression of small nuclear and cytoplastnic RNA genes in trypanosomes. Mol. Cell. Biol. 14, 6736-6742.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 6736-6742
-
-
Nakaar, V.1
Dare, A.O.2
Hong, D.3
Ullu, E.4
Tschudi, C.5
-
37
-
-
0020023493
-
snRNAs, snRNPs, and RNA processing
-
[37] Busch, H., Reddy, R., Rothblum, L. and Choi, C.Y. (1982) snRNAs, snRNPs, and RNA processing. Ann. Rev. Biochem. 51, 617-654.
-
(1982)
Ann. Rev. Biochem.
, vol.51
, pp. 617-654
-
-
Busch, H.1
Reddy, R.2
Rothblum, L.3
Choi, C.Y.4
-
38
-
-
0022206234
-
Primary and secondary structure of U8 small nuclear RNA
-
[38] Reddy, R., Henning, D. and Busch, H. (1985) Primary and secondary structure of U8 small nuclear RNA. J. Biol. Chem. 260, 10930-10935.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 10930-10935
-
-
Reddy, R.1
Henning, D.2
Busch, H.3
-
39
-
-
0023656329
-
A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs
-
[39] Bochnig, P., Reuter, R., Bringmann, P. and Luhrmann, R. (1987) A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs. Eur. J. Biochem. 168, 461-467.
-
(1987)
Eur. J. Biochem.
, vol.168
, pp. 461-467
-
-
Bochnig, P.1
Reuter, R.2
Bringmann, P.3
Luhrmann, R.4
-
40
-
-
0019320732
-
Modification of the 5′ end of mRNA: Association of RNA triphosphatase with the RNA Guanylyltransferase-RNA (Guanine 7-) methyltransferase complex from vaccinia virus
-
[40] Venkatesan, S., Gershowitz, A. and Moss, B. (1980) Modification of the 5′ end of mRNA: Association of RNA triphosphatase with the RNA Guanylyltransferase-RNA (Guanine 7-) methyltransferase complex from Vaccinia virus. J. Biol. Chem. 255, 903-908.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 903-908
-
-
Venkatesan, S.1
Gershowitz, A.2
Moss, B.3
-
41
-
-
0025731211
-
A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison
-
[41] Zuker, M., Jaeger, J.A. and Turner, D.H. (1991) A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acids Res. 19, 2707-2714.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2707-2714
-
-
Zuker, M.1
Jaeger, J.A.2
Turner, D.H.3
-
42
-
-
0026605043
-
U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites
-
[42] Newman, A.J. and Norman, C. (1992) U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites. Cell 68, 743-754.
-
(1992)
Cell
, vol.68
, pp. 743-754
-
-
Newman, A.J.1
Norman, C.2
-
43
-
-
0027519456
-
Mutations in the conserved loop of human U5 snRNA generate use of novel cryptic 5′ splice sites in vivo
-
[43] Cortes, J.J., Sontheimer, E.J., Seiwert, S.D. and Steitz, J.A. (1993) Mutations in the conserved loop of human U5 snRNA generate use of novel cryptic 5′ splice sites in vivo. EMBO J. 12, 5181-5189.
-
(1993)
EMBO J.
, vol.12
, pp. 5181-5189
-
-
Cortes, J.J.1
Sontheimer, E.J.2
Seiwert, S.D.3
Steitz, J.A.4
|