Exon mapping by fiber-FISH or LR-PCR

Genomics

Volumn 38, Issue 3, 1996, Pages 277-282

  Florijn, Ralph J ^a   Van De Rijke, Frans M ^a   Vrolijk, Hans ^a   Blonden, Lau A J ^b   Hofker, Marten H ^b   Den Dunnen, Johan T ^b   Tanke, Hans J ^a   Van Ommen, Gert Jan B ^b   Raap, Anton K ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA FRAGMENT;

ARTICLE; CONTROLLED STUDY; COSMID; DNA HYBRIDIZATION; DUCHENNE MUSCULAR DYSTROPHY; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; GENE MAPPING; HUMAN; HUMAN CELL; INTRON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SKIN FIBROBLAST;

EID: 0030589501     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0629     Document Type: Article

References (27)

1. Barnes, W. M. (1994). PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc. Natl. Acad. Sci. USA 91: 2216-2220.
2. Bensimon, A., Simon, A., Chiffaudel, A., Croquette, V., Heslot, F., and Bensimon, D. (1994). Alignment and sensitive detection of DNA by a moving interface. Science 265: 2096-2098.
3. Fidlerova, H., Senger, G., Kost, M., Sansau, P., and Sheer, D. (1994). Two simple procedures for releasing chromatin from routinely fixed cells for fluorescence in situ hybridization. Cytogenet. Cell Genet. 65: 203-205.
4. Florijn, R. J., Bonden, L. A. J., Vrolijk, J., Wiegant, J., Vaandrager, J. W., Baas, F., Dunnen, J. T., Tanke, H. J., Ommen, G. J. B., and Raap, A. K. (1995). High-resolution DNA fiber-FISH for genomic DNA mapping and colour bar-coding of large genes. Hum. Mol. Genet. 5:831-836.
5. Haaf, T., and Ward, D. C. (1994). Structural analysis of α-satellite DNA and centromere proteins using extended chromatin and chromosomes. Hum. Mol. Genet. 3: 697-710.
6. Heiskanen, M., Karhu, R., Hellsten, E., Peltonen, L., Kallioniemi, O., and Palotie, A. (1994). High resolution mapping using fluorescence in situ hybridization to extended DNA fibers prepared from agarose-embedded cells. BioTechniques 17(5): 928-933.
7. Heiskanen, M., Hellsten, E., Kallioniemi, O. P., Makela, T. P., Alitalo, K., Peltonen, L., and Palotie, A. (1995a). Visual mapping by fiber-FISH. Genomics 30: 31-36.
8. Heiskanen, M., Saitta, B., Palotie, A., and Chu, M. L. (1995b). Head to tail organization of the human COL6A1 and COL6A2 genes by fiber-FISH. Genomics 29: 801-803.
9. Heng, H. H. Q., Suire, J., and Tsui, L.-C. (1992). High-resolution mapping of mammalian genes by in situ hybridization to free chromatin. Proc. Natl. Acad. Sci. USA 89: 9509-9513.
10. Houseal, T. W., and Klinger, K. W. (1994). What's in a spot? Hum. Mol. Genet. 3: 1215-1216.
11. Hudson, T. J., Stein, L. D., Gerety, S. S., Ma, J. L., Castle, A. B., Silva, J., Slonim, D. K., Baptista, R., Kruglyak, L., Xu, S. H., Hu, X. T., Colbert, A. M. E., Rosenberg, C., Reevedaly, M. P., Rozen, S., Hui, L., Wu, X. Y., Vestergaard, C., Wilson, K. M., Bae, J. S., Maitra, S., Ganiatsas, S., Evans, C. A., Deangelis, M. M., Ingalls, K. A., Nahf, R. W., Horton, L. T., Anderson, M. O., Collymore, A. J., Ye, W. J., Kouyoumjian, V., Zemsteva, I. S., Tam, J., Devine, R., Courtney, D. F., Renaud, M. T., Nguyen, H., Oconnor, T. J., Fizames, C., Faure, S., Gyapay, G., Dib, C., Morissette, J., Orlin, J. B., Birren, B. W., Goodman, N., Weissenbach, J., Hawkins, T. L., Foote, S., et al. (1995). An STS-based map of the human genome. Science 270: 1945-1954.
12. Korenberg, J. R., Chen, X. N., Adams, M. D., and Venter, J. C. (1995). Toward a cDNA map of the human genome. Genomics 29: 364-370.
13. Li, W-H., Tanimura, M., Luo, C-C., Datta, S., and Chan, L. (1988). The apolipoprotein multigene family; biosynthesis, structure, structure-function relationships, and evolution. J. Lipid Res. 29: 245-271.
14. Lichter, P., Tang, C. C., Call, K., Hermanson, G., Evans, G., Housman, D., and Ward, D. C. (1990). High resolution mapping of human chromosome 11 by in situ hybridization with cosmid probes. Science 247: 64-69.
15. Nilsson, M., Malmgren, H., Samiotaki, M., Kwiatkowski, M., Chowdhary, B. P., and Landegren, U. (1994). Padlock probes: Circularizing oligonucleotides for localized DNA detection. Science 265: 2085-2088.
16. Parra, I., and Windle, B. (1993). High resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet. 5: 17-21.
17. Patil, N., Peterson, A., Rothman, A., deJong, P. J., Myers, R. M., and Cox, D. R. (1994). A high resolution physical map of 2.5 Mbp of the Down syndrome region on chromosome 21. Hum. Mol. Genet. 3: 1811-1817.
18. Raap, A. K., Corput, M. P. C., Vervenne, R. A. W., Gijlswijk, R. P. M., Tanke, H. J., and Wiegant, J. (1995). Ultra-sensitive FISH using peroxidase-mediated deposition of biotin-or fluorochrome tyramides. Hum. Mol. Genet. 4: 529-534.
19. Rosenberg, C., Florijn, R. J., Rijke, F. M., Blonden, L. A. J., Raap, A. K., Ommen, G-J. B., and Dunnen, J. (1995). High resolution DNA fiber-FISH on yeast artificial chromosomes: Direct visualization of DNA replication. Nature Genet. 10: 477-479.
20. Shepherd, N. S., Pfrogner, B. D., Coulby, J. N., Ackerman, S. L., Vaidyananthan, G., Sauer, R. H., Balkenhol, T. C., and Sternberg, N. (1994). Preparation and screening of an arrayed human genomic library generated with the P1 cloning system. Proc. Natl. Acad. Sci. USA 91: 2629-2633.
21. Shizuya, H., Birren, B., Kim, U. J., Mancino, V., Slepak, T., Tachiiri, Y., and Simon, M. (1992). Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89: 8794-8797.
22. Smit, M., van de Kooij-Meijs, E., Woudt, L. P., Havekes, L. M., and Frants, R. R. (1988). Exact localization of the familial dysbetalipo-proteinemia associated HPAI restriction site in the promoter region of the APOC1 gene. Biochem. Biophys. Res. Commun. 1282-1288.
23. Walter, M. A., Spillet, D. J., Thomas, P., Weissenbach, J., and Goodfellow, P. N. (1994). A method for constructing radiation hybrid maps of whole genomes. Nature Genet. 7: 22-28.
24. Weier, H. U. G., Wang, M., Mullikin, J. C., Zhu, Y., Cheng, J. F., Greulich, K. M., Bensimon, A., and Gray, J. W. (1995). Quantitative DNA fiber mapping. Hum. Mol. Genet. 4: 1903-1910.
25. Wiegant, J., Galjart, N. J., Raap, A. K., and d'Azzo, A. (1991). The gene encoding human protective protein (PPGB) is on chromosome 20. Genomics 10: 345-349.
26. Wiegant, J., Kalle, W., Mullenders, L., Brookes, S., Hoovers, J. M. N., Dauwerse, J. G., Ommen, G. J. B., and Raap, A. K. (1992). High-resolution in situ hybridization using DNA halo preparations. Hum. Mol. Genet. 1: 587-591.
27. Yoshida, K., Strathmann, M. P., Mayeda, C. A., Martin, C. H., and Palazzolao, M. J. (1993). A simple and efficient method for constructing high resolution physical maps. Nucleic Acids Res. 21: 3553-3562.