The tat and C2-V3 envelope genes in the molecular epidemiology of human immunodeficiency virus-1

Virology

Volumn 221, Issue 2, 1996, Pages 310-317

  Lorenzo, Eric ^a   Herrera, Rene J ^a   Lai, Shenghan ^b   Fischl, Margaret A ^b   Hill, Martin D ^c,d  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

^c NOVA SOUTHEASTERN UNIVERSITY   (United States)

^d NOVA SOUTHEASTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSACTIVATOR PROTEIN;

ARTICLE; DNA SEQUENCE; ENVELOPE GENE; EXON; GENE CLUSTER; GENE MUTATION; GENETIC LINKAGE; GENETIC VARIABILITY; HETEROSEXUALITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MOLECULAR GENETICS; PHYLOGENY; PRIORITY JOURNAL;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0030586017     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.0380     Document Type: Article

References (28)

1. Albert, J., Wahlberg, J., Leitner, T., Escanilla, D., and Uhlén, M. (1994). Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes. J. Virol. 68, 5918-5924.
2. Balfe, P., Simmonds, P., Ludlam, C. A., Bishop, J. O., and Brown, A. J. L. (1990). Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: Rate of sequence change and low frequency of inactivating mutations. J. Virol. 64, 6221-6223.
3. Bonhoeffer, S., Holmes, E. C., and Nowak, M. A. (1995). Causes of HIV diversity. Nature 376, 125.
4. Chesebro, B., Wehrly, K., Nishio, J., and Perryman, S. (1992). Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell tropic isolates: Definition of critical amino acids involved in cell tropism. J. Virol. 66, 6547-6554.
5. Cornellisen, M., Mulder-Kampinga, G., Veenstra, J., Zorgdrager, F., Kuiken, C., Hartman, S., Dekker, J., vander Hoek, L., Sol, L., Coutinho, R., and Goudsmit, J. (1995). Syncytium-inducing (SI) phenotype suppression at seroconversion after intramuscular inoculation of a non-syncytium-inducing/SI phenotypically mixed human immunodeficiency virus population. J. Virol. 69, 1810-1818.
6. Crandall, K. A. (1995). Intraspecific phylogenetics: Support for the dental transmission of human immunodeficiency virus. J. Virol. 69, 2351-2356.
7. de Jong, J.-J., Goudsmit, J., Keulen, W., Klaver, B., Krone, W., Tersmette, M., and de Ronde, A. (1992). Human immunodeficiency virus type 1 clones chimeric for the envelope V3 domain differ in syncytium formation and replication capacity. J. Virol. 66, 757-765.
8. DeBry, R. W., Abele, L. G., Weiss, S. H., Hill, M. D., Bouzas, M., Lorenzo, E., Graebnitz, F., and Resnick, L. (1993). Dental HIV transmission? Nature 361, 691.
9. Felsenstein, J. (1993). PHYLIP Version 3.5c. Copyright 1993, J. Felsenstein and the University of Washington.
10. Hillis, D. M., and Huelsenbeck, J. P. (1994). Support for dental HIV transmission. Nature 39, 24-25. [Letter, comment]
11. Hillis, D. M., Huelsenbeck, J. P., and Cunningham, C. W. (1994). Application and accuracy of molecular phylogenies. Science 264, 671-679.
12. Holmes, E. C., Zhang, L. Q., Simmonds, P., Ludlam, C. A., and Brown, A. J. L. (1992). Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient. Proc. Natl. Acad. Sci. USA 89, 4835-4839.
13. Holmes, E. C., Zhang, L. Q., Simmonds, P., Rogers, A. S., and Brown, A. J. L. (1993). Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon. J. Infect. Dis. 167, 1411-1414.
14. Jaffe, H. W., McCurdy, J. M., Kalish, M. L., Liberti, T., Metellus, G., Bowman, B. H., Richards, S. B., Neasman, A. R., and Witte, J. J. (1994). Lack of HIV transmission in the practice of a dentist with AIDS. Ann. Intern. Med. 121, 855-859.
15. J, J, and Loeb, L. A. (1994). Fidelity of HIV-1 reverse transcriptase copying a hypervariable region of the HIV-1 env gene. Virology 185, 323-330.
16. Korber, B., and Myers, G. (1992). Signature pattern analysis: A method for assessing viral sequence relatedness. AIDS Res. Hum. Retroviruses 8, 1549-1560.
17. Kuiken, C. L., De Jong, J.-J., Baan, E., Keulen, W., Termsette, M., and Goudsmit, J. (1992). Evolution of the V3 envelope domain in proviral sequences and isolates of human immunodeficiency virus type 1 during transition of the viral biological phenotype. J. Virol. 66, 4622-4627.
18. Kuiken, C. L., Zwart, G., Baan, E., Couthino, R. A., van den Hoek, J. A. R., and Goudsmit, J. (1993). Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc. Natl. Acad. Sci. USA 90, 9061-9065.
19. Louwagie, J., McCutchan, F. E., Peeters, M., Brennan, T. P., Sanders-Buell, E., Eddy, G. A., van der Groen, G., Fransen, K., Gershy-Damet, G.-M., Deleys, R., and Burke, D. S. (1993). Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. AIDS 7, 769-780.
20. Lukashov, V. V., Kuiken, C. L., and Goudsmit, J. (1995). Intra-host human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J. Virol. 69, 6911-6916.
21. Myers, G., Berzofsky, J. A., Korber, B., Smith, R. F., and Pavlakis, G. N. (1992). "Human Retroviruses and AIDS." Los Alamos National Laboratory, Los Alamos, NM.
22. Nowak, M. A., Anderson, R. M., McLean, A. R., Wolfs, T. F. W., Goudsmit, J., and May, R. M. (1991). Antigenic diversity thresholds and the development of AIDS. Science 254, 963-969.
23. Ou, C.-Y., Cielsielski, C. A., Myers, G., Bandea, C., Luo, C., Korber, B. T. M., Mullins, J. I., Schochetman, G., Berkelman, R. L., Economou, A. N., Witte, J. J., Furman, L. J., Satten, G. A., MacInnes, K. A., Curran, J. W., Jaffe, H. W., Laboratory Investigation Group, and Epidemiologic Investigation Group. (1992). Molecular epidemiology of HIV transmission in a dental practice. Science 256, 1156-1171.
24. Ou, C.-Y., Takebe, Y., Weniger, B., Luo, C.-C., Kalish, M. L., Auwanit, W., Yamazaki, S., Gayle, H. D., Young, N. L., and Schochetman, G. (1993). Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand. Lancet 341, 1171-1174.
25. Wolfs, T. F. W., De Jong, J., Van Den Berg, H., Tunagel, J. M. G. H., Krone, W. J. A., and Goudsmit, J. (1990). Evolution of sequences encoding the principal neutralization epitope of human immunodeficiency virus type 1 is host-dependent, rapid, and continuous. Proc. Natl. Acad. Sci. USA 87, 9938-9942.
26. Wolfs, T. F. W., Zwart, G., Bakker, M., Valk, M., Kuiken, C. L., and Goudsmit, J. (1991). Naturally occurring mutations within HIV-1 V3 genomic RNA lead to antigenic variation dependent on a single amino acid substitution. Virology 185, 195-205.
27. Wolfs, T. F. W., Nara, P. L., and Goudsmit, J. (1993). Genotypic and phenotypic variation of HIV-1: Impact on AIDS pathogenesis and vaccination. Chem. Immunol. 56, 1-33.
28. Zhu, T., Mo, H., Wang, N., Nam, D. S., Cao, Y., Koup, R. A., and Ho, D. D. (1993). Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 261, 1179-1181.